CmoCh10G011030.1 (mRNA) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh10G011030.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Retrotransposon protein, Ty3-gypsy subclass, putative
Location	Cmo_Chr10 : 6373599 .. 6377084 (+)
Sequence length	1659

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATCCAGGAGGTACTAAGATGTACCAAGATTTAAAACAACACTTTTGGTGGAAGAGCATGAAGAGGGATGTGGCCGGGTTTGTGAGCAAGTGCTTAGTTTGTCAACAAGTGAAAGCTCCAAGACAAAAAACGGCGGGGTTGTTGCAGCCCCTAAGCATACCAGAGTGGAAGTGGGAAAACATAGCGATGGACTTCATAGTAGGTTTACCCAAAACGCCCAAGGGCTATATAGTGATCTGGGTAGTTGTCGATAGGTTGACCAAGTCGGCACACTTTCTACCTGGGAAGGTTACATATACAGTTGACAATTGGGCACAACTGTACGTGAAAGAAATAGTAAGACTACATGGAGTCCCAGTGTCTATAGTGTCGGATCGGGATCCACGCTTTACGTCAGCGTTTTGGCGCGGACTTCAAAAAGCACTGGGTACCCGCCTCGACTTTAGTACCGCCTTTCACCCCCAAACAGATGGACAAACGGAGCATTTAAACCAAATTCTAGAGGACATGCTACGCGCTTGCGTACTAGATTTTAAGGAAAGTTGGGATTCCAAACTACACCTAATGGAATTCTCGTATAACAACAGTTTCCAAGCAACTATTGGAATGGCACCGTTTGAGGCCCTGTACGGGAAACGGTGTAGGTCCCCACTATGTTGGGACGAGGTAGGAGAGAAAGAATTAGTAGGACCCGAGTTGGTTCGACTCACCAATGAGGCTGTCCAGAAAATTCGAGCGAGGATGCGTACCGCTCAAAGTAGACAGAAAAGCTACGCCGATGTAAGGCGTAAAAGCCTGGAGTTTGAGGTGGGGGACCCAGTATTCCTCAAGGTGGCACCTATGAAAGGTGTGTTAAGATACGGACATAAGGGCAAGTTAAGTCCTAAATTCATTGGACCATTCGAGATCCTAGAGCGGGTTGGTCCGGTAGCGTATAAGTTAGCCTTACCTCCAGCCCTCTCAGGAGTACATGACGTATTTCATGTGTCGATGTTGAGGAAGTACATTACGGATCCTATCCACGTAATAGACTACGAACCACTCAAACTCAATGAAGATCTGAGCTACGAGGAAAAATCAGTAAGAATCTTAGCTAGAGAAGTAAAAACCTTACGCAACAGGAGTATTGCGTTCATTAAGGTACTGTGGCGGAATCACCACAGTGAGGAAGCCACGTGGGAGCGTGAGGACGAGATAAGAGAGAAATACCCCGAGTTGGTACAAGAGTTTGAGACTTTCAAGGACGAAAGTTATTTTTAGGGGTAGATAATGTAACGACCCGGGAAAGAAAGAAAGAAAAAGAAAATATATATATAAATNNNNNNNNNNAAAAAAAAAAAAAAAAAACCCAGTCGCCGAAAAACCCGCGAGTTTTCTGGCGACCGCCGAGTTTCGCGAAACGACGGCCACAGCACGCCCACCCTCAGCCCAGCATCTTCAGAACACCTACAAAGGGAGAAAAGAGAGAAAATTTGGAGAGAGAGAGAGAGAGATTTCGGACAAACGTCGGCGAGTGTTCAGTTTCTCCGACGAGCCCTCAAACCACCCTTAAACCGACACCAAACGACCTGTTACTACCGTAAGAGAGATCCCTAACGAAAGCACAATAACTCAGGGTGCATTTTGTGTTATTTCGTAAGCATCGTCGTCGGTAACCGAGGTCGGAAAGTTAGGTTTCTTAATCGATTCTTAGATCTATGGCTTTTAGGAGCTTTTAGGCCGCAAAACTCCCAAAAAGGAAAGAAGGACGACGAACAAAGAGGAAAAGGGAAGGAAGAGGACCGAAATCGGCAACGGAAACGCCGCGGGAAGGAGAGAGAAAACTCGCCAGAAAATCGGCCAAAGTCGAGTAAGGAAGACGAGATCCACGGATCCGGGTCAACCCGAACCCAGAACCCGGGAAAGCCAGCCCGTTCCTCCCTTGGCCTCTGCCTTCGGCCCAGCCCAACTACAGCGGCCCAAACCTCAAACCGGCCCAGAAGCTACGGTTCAGTTGAACCAACCCAGACTAGACCCACGGTCCAATTGAACCGGCCTGCAAACCAAACACTTGCGGCCCAGGCCAGTAAGCCGAGGCCCAACGTTTAGCCTTGGCCCAGTAGCCTTCCACAGCCCGCGACCCGAACCACCACCCGAACCGGACTGCGACCCGCGCTTCGACCCGACACTACCGCCCGACGTGGCTTTCTCTGTTGCTGCCACGTGTCACACAGCGGCGCGGTAGTCCTCGGCTCGGCTCGGCGCAAACGGCTCAGGCTCCCTCCGGTGACGCTCCGGCGGCTCCTTCGGCGGCTCCAGCGGCTGTTCGGCTCGGCTCACCTGTTTTCAGCCCGGTTTCCACTGTTTCGACCCTCCCGAATCTGTTTTCGGCCCCAATTAAGGTATCCGAGGCCATTTTAGAGCCGTATTTCAGATTTATTAAATTAGGTAAATTAATTGTGAAATACTAACGGAAAGTGGTGAACGGTGTGATAGGAAACAAACCCCAGCGAAGTAGGAAGCAGCTCTCACGGAACGGGAGCTTACGTTTAGCTATTTAGGGAGTACTTCGGCCGAGGCCAACCAAGTAAGTGACCTTACTATATGATAGGCTAAAAATTGTATGAGTTACAATATTGTATGAACTATGTCGTACGATGCGGTATATGAGTTATGATGATGTGTGGGTCATAATACCTGATGATGTACTCAGTATATATATATATTTTGATGAATGTCGTACTTGATATGTTTGATGCACTTTGTGGCAATATGATGAGTATGATGATTGCGTGATGTTTACCTTAATATGATGATGTTTTCCATATTGAGCATGTTATATGATGATGAGTGCCATATTGCATCATGTCGTTAGATCGACATAGGACACAACCCTAAGAGCGTGAAAATGATATTAATATAAATATCCACGAGTATGTGTTACCTAGAGTAACAAAGAGATGAGACTAGAGGGTTGCGTCAGAAGAGACATTATGATGGATTTAGAGGGACCTCATGCATATTGTATGTTCATAAGCATAGGGCTACTTCCCCTAGAGATGATGAGTGCGGACGCGCACCGTATGATGAGCGCGTATGCGCACAGGTGTGAAAGCACACAGATGAGGGTGTTCATGAGGTGCATGACACTATGGGGTTCCGCTGACCTCCGGACGTCGCTACAGATTAGCTTGACCAGAGGGTCCAGGGGGTGTGCGAGCGCCCTGGGGATTCACACTCGCACGTGTGAGTCGTGTGTAGGGAAGTACTACACATCCAATTTGTCCGAGACTGGAGGCCACCCCTAAGATGATTAGAGATAGGTCCCTAAATCATGATTGCATGTGTTTGCATTTGCATGGCCCCCTATAGTGGAGCCACTTACTGAGTATTCTTTGAAATACTCAGGCCGTGTGCCACATCATTTTTCAGGTAAAGGCGAGGCGCACTTGTACAGAAGACGGCGGCATCGCGAGCAGAGACTGTGGCACGTGCATAGGGTAG

mRNA sequence

ATGCATCCAGGAGGTACTAAGATGTACCAAGATTTAAAACAACACTTTTGGTGGAAGAGCATGAAGAGGGATGTGGCCGGGTTTGTGAGCAAGTGCTTAGTTTGTCAACAAGTGAAAGCTCCAAGACAAAAAACGGCGGGGTTGTTGCAGCCCCTAAGCATACCAGAGTGGAAGTGGGAAAACATAGCGATGGACTTCATAGTAGGTTTACCCAAAACGCCCAAGGGCTATATAGTGATCTGGGTAGTTGTCGATAGGTTGACCAAGTCGGCACACTTTCTACCTGGGAAGGTTACATATACAGTTGACAATTGGGCACAACTGTACGTGAAAGAAATAGTAAGACTACATGGAGTCCCAGTGTCTATAGTGTCGGATCGGGATCCACGCTTTACGTCAGCGTTTTGGCGCGGACTTCAAAAAGCACTGGGTACCCGCCTCGACTTTAGTACCGCCTTTCACCCCCAAACAGATGGACAAACGGAGCATTTAAACCAAATTCTAGAGGACATGCTACGCGCTTGCGTACTAGATTTTAAGGAAAGTTGGGATTCCAAACTACACCTAATGGAATTCTCGTATAACAACAGTTTCCAAGCAACTATTGGAATGGCACCGTTTGAGGCCCTGTACGGGAAACGGTGTAGGTCCCCACTATGTTGGGACGAGGTAGGAGAGAAAGAATTAGTAGGACCCGAGTTGGTTCGACTCACCAATGAGGCTGTCCAGAAAATTCGAGCGAGGATGCGTACCGCTCAAAGTAGACAGAAAAGCTACGCCGATGTAAGGCGTAAAAGCCTGGAGTTTGAGGTGGGGGACCCAGTATTCCTCAAGGTGGCACCTATGAAAGGTGTGTTAAGATACGGACATAAGGGCAAGTTAAGTCCTAAATTCATTGGACCATTCGAGATCCTAGAGCGGGTTGGTCCGGTAGCGTATAAGTTAGCCTTACCTCCAGCCCTCTCAGGAGTACATGACGTATTTCATGTGTCGATGTTGAGGAAGTACATTACGGATCCTATCCACGTAATAGACTACGAACCACTCAAACTCAATGAAGATCTGAGCTACGAGGAAAAATCAGTAAGAATCTTAGCTAGAGAAGTAAAAACCTTACGCAACAGGAGTATTGCGTTCATTAAGGAGCTTTTAGGCCGCAAAACTCCCAAAAAGGAAAGAAGGACGACGAACAAAGAGGAAAAGGGAAGGAAGAGGACCGAAATCGGCAACGGAAACGCCGCGGGAAGGAGAGAGAAAACTCGCCAGAAAATCGGCCAAAGTCGACCTTCCACAGCCCGCGACCCGAACCACCACCCGAACCGGACTGCGACCCGCGCTTCGACCCGACACTACCGCCCGACGTGGCTTTCTCTGTTGCTGCCACGTGTCACACAGCGGCGCGGTAGTCCTCGGCTCGGCTCGGCGCAAACGGCTCAGGCTCCCTCCGGTGACGCTCCGGCGGCTCCTTCGGCGGCTCCAGCGGCTGTTCGGCTCGGCTCACCTGTTTTCAGCCCGGTTTCCACTGTTTCGACCCTCCCGAATCTGTTTTCGGCCCCAATTAAGGCCGTGTGCCACATCATTTTTCAGGTAAAGGCGAGGCGCACTTGTACAGAAGACGGCGGCATCGCGAGCAGAGACTGTGGCACGTGCATAGGGTAG

Coding sequence (CDS)

ATGCATCCAGGAGGTACTAAGATGTACCAAGATTTAAAACAACACTTTTGGTGGAAGAGCATGAAGAGGGATGTGGCCGGGTTTGTGAGCAAGTGCTTAGTTTGTCAACAAGTGAAAGCTCCAAGACAAAAAACGGCGGGGTTGTTGCAGCCCCTAAGCATACCAGAGTGGAAGTGGGAAAACATAGCGATGGACTTCATAGTAGGTTTACCCAAAACGCCCAAGGGCTATATAGTGATCTGGGTAGTTGTCGATAGGTTGACCAAGTCGGCACACTTTCTACCTGGGAAGGTTACATATACAGTTGACAATTGGGCACAACTGTACGTGAAAGAAATAGTAAGACTACATGGAGTCCCAGTGTCTATAGTGTCGGATCGGGATCCACGCTTTACGTCAGCGTTTTGGCGCGGACTTCAAAAAGCACTGGGTACCCGCCTCGACTTTAGTACCGCCTTTCACCCCCAAACAGATGGACAAACGGAGCATTTAAACCAAATTCTAGAGGACATGCTACGCGCTTGCGTACTAGATTTTAAGGAAAGTTGGGATTCCAAACTACACCTAATGGAATTCTCGTATAACAACAGTTTCCAAGCAACTATTGGAATGGCACCGTTTGAGGCCCTGTACGGGAAACGGTGTAGGTCCCCACTATGTTGGGACGAGGTAGGAGAGAAAGAATTAGTAGGACCCGAGTTGGTTCGACTCACCAATGAGGCTGTCCAGAAAATTCGAGCGAGGATGCGTACCGCTCAAAGTAGACAGAAAAGCTACGCCGATGTAAGGCGTAAAAGCCTGGAGTTTGAGGTGGGGGACCCAGTATTCCTCAAGGTGGCACCTATGAAAGGTGTGTTAAGATACGGACATAAGGGCAAGTTAAGTCCTAAATTCATTGGACCATTCGAGATCCTAGAGCGGGTTGGTCCGGTAGCGTATAAGTTAGCCTTACCTCCAGCCCTCTCAGGAGTACATGACGTATTTCATGTGTCGATGTTGAGGAAGTACATTACGGATCCTATCCACGTAATAGACTACGAACCACTCAAACTCAATGAAGATCTGAGCTACGAGGAAAAATCAGTAAGAATCTTAGCTAGAGAAGTAAAAACCTTACGCAACAGGAGTATTGCGTTCATTAAGGAGCTTTTAGGCCGCAAAACTCCCAAAAAGGAAAGAAGGACGACGAACAAAGAGGAAAAGGGAAGGAAGAGGACCGAAATCGGCAACGGAAACGCCGCGGGAAGGAGAGAGAAAACTCGCCAGAAAATCGGCCAAAGTCGACCTTCCACAGCCCGCGACCCGAACCACCACCCGAACCGGACTGCGACCCGCGCTTCGACCCGACACTACCGCCCGACGTGGCTTTCTCTGTTGCTGCCACGTGTCACACAGCGGCGCGGTAGTCCTCGGCTCGGCTCGGCGCAAACGGCTCAGGCTCCCTCCGGTGACGCTCCGGCGGCTCCTTCGGCGGCTCCAGCGGCTGTTCGGCTCGGCTCACCTGTTTTCAGCCCGGTTTCCACTGTTTCGACCCTCCCGAATCTGTTTTCGGCCCCAATTAAGGCCGTGTGCCACATCATTTTTCAGGTAAAGGCGAGGCGCACTTGTACAGAAGACGGCGGCATCGCGAGCAGAGACTGTGGCACGTGCATAGGGTAG

Homology

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BLAST of CmoCh10G011030.1 vs. Swiss-Prot
Match: TF211_SCHPO (Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-11 PE=3 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 3.4e-47
Identity = 111/340 (32.65%), Postives = 177/340 (52.06%), Query Frame = 1


Query: 1    MHPGGTKMYQDLKQHFWWKSMKRDVAGFVSKCLVCQQVKAPRQKTAGLLQPLSIPEWKWE 60
            +HPG   +   + + F WK +++ +  +V  C  CQ  K+   K  G LQP+   E  WE
Sbjct: 926  IHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPWE 985

Query: 61   NIAMDFIVGLPKTPKGYIVIWVVVDRLTKSAHFLPGKVTYTVDNWAQLYVKEIVRLHGVP 120
            +++MDFI  LP++  GY  ++VVVDR +K A  +P   + T +  A+++ + ++   G P
Sbjct: 986  SLSMDFITALPES-SGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNP 1045

Query: 121  VSIVSDRDPRFTSAFWRGLQKALGTRLDFSTAFHPQTDGQTEHLNQILEDMLRACVLDFK 180
              I++D D  FTS  W+         + FS  + PQTDGQTE  NQ +E +LR       
Sbjct: 1046 KEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHP 1105

Query: 181  ESWDSKLHLMEFSYNNSFQATIGMAPFEALYG-KRCRSPLCWDEVGEKELVGPELVRLTN 240
             +W   + L++ SYNN+  +   M PFE ++      SPL      +K     E  + T 
Sbjct: 1106 NTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPLELPSFSDKT---DENSQETI 1165

Query: 241  EAVQKIRARMRTAQSRQKSYADVRRKSL-EFEVGDPVFLKVAPMKGVLRYGHK-GKLSPK 300
            +  Q ++  + T   + K Y D++ + + EF+ GD V +K    +    + HK  KL+P 
Sbjct: 1166 QVFQTVKEHLNTNNIKMKKYFDMKIQEIEEFQPGDLVMVK----RTKTGFLHKSNKLAPS 1225

Query: 301  FIGPFEILERVGPVAYKLALPPALSGV-HDVFHVSMLRKY 337
            F GPF +L++ GP  Y+L LP ++  +    FHVS L KY
Sbjct: 1226 FAGPFYVLQKSGPNNYELDLPDSIKHMFSSTFHVSHLEKY 1257

[Close]

BLAST of CmoCh10G011030.1 vs. Swiss-Prot
Match: TF29_SCHPO (Transposon Tf2-9 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-9 PE=3 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 3.4e-47
Identity = 111/340 (32.65%), Postives = 177/340 (52.06%), Query Frame = 1


Query: 1    MHPGGTKMYQDLKQHFWWKSMKRDVAGFVSKCLVCQQVKAPRQKTAGLLQPLSIPEWKWE 60
            +HPG   +   + + F WK +++ +  +V  C  CQ  K+   K  G LQP+   E  WE
Sbjct: 926  IHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPWE 985

Query: 61   NIAMDFIVGLPKTPKGYIVIWVVVDRLTKSAHFLPGKVTYTVDNWAQLYVKEIVRLHGVP 120
            +++MDFI  LP++  GY  ++VVVDR +K A  +P   + T +  A+++ + ++   G P
Sbjct: 986  SLSMDFITALPES-SGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNP 1045

Query: 121  VSIVSDRDPRFTSAFWRGLQKALGTRLDFSTAFHPQTDGQTEHLNQILEDMLRACVLDFK 180
              I++D D  FTS  W+         + FS  + PQTDGQTE  NQ +E +LR       
Sbjct: 1046 KEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHP 1105

Query: 181  ESWDSKLHLMEFSYNNSFQATIGMAPFEALYG-KRCRSPLCWDEVGEKELVGPELVRLTN 240
             +W   + L++ SYNN+  +   M PFE ++      SPL      +K     E  + T 
Sbjct: 1106 NTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPLELPSFSDKT---DENSQETI 1165

Query: 241  EAVQKIRARMRTAQSRQKSYADVRRKSL-EFEVGDPVFLKVAPMKGVLRYGHK-GKLSPK 300
            +  Q ++  + T   + K Y D++ + + EF+ GD V +K    +    + HK  KL+P 
Sbjct: 1166 QVFQTVKEHLNTNNIKMKKYFDMKIQEIEEFQPGDLVMVK----RTKTGFLHKSNKLAPS 1225

Query: 301  FIGPFEILERVGPVAYKLALPPALSGV-HDVFHVSMLRKY 337
            F GPF +L++ GP  Y+L LP ++  +    FHVS L KY
Sbjct: 1226 FAGPFYVLQKSGPNNYELDLPDSIKHMFSSTFHVSHLEKY 1257

[Close]

BLAST of CmoCh10G011030.1 vs. Swiss-Prot
Match: TF28_SCHPO (Transposon Tf2-8 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-8 PE=3 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 3.4e-47
Identity = 111/340 (32.65%), Postives = 177/340 (52.06%), Query Frame = 1


Query: 1    MHPGGTKMYQDLKQHFWWKSMKRDVAGFVSKCLVCQQVKAPRQKTAGLLQPLSIPEWKWE 60
            +HPG   +   + + F WK +++ +  +V  C  CQ  K+   K  G LQP+   E  WE
Sbjct: 926  IHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPWE 985

Query: 61   NIAMDFIVGLPKTPKGYIVIWVVVDRLTKSAHFLPGKVTYTVDNWAQLYVKEIVRLHGVP 120
            +++MDFI  LP++  GY  ++VVVDR +K A  +P   + T +  A+++ + ++   G P
Sbjct: 986  SLSMDFITALPES-SGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNP 1045

Query: 121  VSIVSDRDPRFTSAFWRGLQKALGTRLDFSTAFHPQTDGQTEHLNQILEDMLRACVLDFK 180
              I++D D  FTS  W+         + FS  + PQTDGQTE  NQ +E +LR       
Sbjct: 1046 KEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHP 1105

Query: 181  ESWDSKLHLMEFSYNNSFQATIGMAPFEALYG-KRCRSPLCWDEVGEKELVGPELVRLTN 240
             +W   + L++ SYNN+  +   M PFE ++      SPL      +K     E  + T 
Sbjct: 1106 NTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPLELPSFSDKT---DENSQETI 1165

Query: 241  EAVQKIRARMRTAQSRQKSYADVRRKSL-EFEVGDPVFLKVAPMKGVLRYGHK-GKLSPK 300
            +  Q ++  + T   + K Y D++ + + EF+ GD V +K    +    + HK  KL+P 
Sbjct: 1166 QVFQTVKEHLNTNNIKMKKYFDMKIQEIEEFQPGDLVMVK----RTKTGFLHKSNKLAPS 1225

Query: 301  FIGPFEILERVGPVAYKLALPPALSGV-HDVFHVSMLRKY 337
            F GPF +L++ GP  Y+L LP ++  +    FHVS L KY
Sbjct: 1226 FAGPFYVLQKSGPNNYELDLPDSIKHMFSSTFHVSHLEKY 1257

[Close]

BLAST of CmoCh10G011030.1 vs. Swiss-Prot
Match: TF27_SCHPO (Transposon Tf2-7 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-7 PE=3 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 3.4e-47
Identity = 111/340 (32.65%), Postives = 177/340 (52.06%), Query Frame = 1


Query: 1    MHPGGTKMYQDLKQHFWWKSMKRDVAGFVSKCLVCQQVKAPRQKTAGLLQPLSIPEWKWE 60
            +HPG   +   + + F WK +++ +  +V  C  CQ  K+   K  G LQP+   E  WE
Sbjct: 926  IHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPWE 985

Query: 61   NIAMDFIVGLPKTPKGYIVIWVVVDRLTKSAHFLPGKVTYTVDNWAQLYVKEIVRLHGVP 120
            +++MDFI  LP++  GY  ++VVVDR +K A  +P   + T +  A+++ + ++   G P
Sbjct: 986  SLSMDFITALPES-SGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNP 1045

Query: 121  VSIVSDRDPRFTSAFWRGLQKALGTRLDFSTAFHPQTDGQTEHLNQILEDMLRACVLDFK 180
              I++D D  FTS  W+         + FS  + PQTDGQTE  NQ +E +LR       
Sbjct: 1046 KEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHP 1105

Query: 181  ESWDSKLHLMEFSYNNSFQATIGMAPFEALYG-KRCRSPLCWDEVGEKELVGPELVRLTN 240
             +W   + L++ SYNN+  +   M PFE ++      SPL      +K     E  + T 
Sbjct: 1106 NTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPLELPSFSDKT---DENSQETI 1165

Query: 241  EAVQKIRARMRTAQSRQKSYADVRRKSL-EFEVGDPVFLKVAPMKGVLRYGHK-GKLSPK 300
            +  Q ++  + T   + K Y D++ + + EF+ GD V +K    +    + HK  KL+P 
Sbjct: 1166 QVFQTVKEHLNTNNIKMKKYFDMKIQEIEEFQPGDLVMVK----RTKTGFLHKSNKLAPS 1225

Query: 301  FIGPFEILERVGPVAYKLALPPALSGV-HDVFHVSMLRKY 337
            F GPF +L++ GP  Y+L LP ++  +    FHVS L KY
Sbjct: 1226 FAGPFYVLQKSGPNNYELDLPDSIKHMFSSTFHVSHLEKY 1257

[Close]

BLAST of CmoCh10G011030.1 vs. Swiss-Prot
Match: TF26_SCHPO (Transposon Tf2-6 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-6 PE=3 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 3.4e-47
Identity = 111/340 (32.65%), Postives = 177/340 (52.06%), Query Frame = 1


Query: 1    MHPGGTKMYQDLKQHFWWKSMKRDVAGFVSKCLVCQQVKAPRQKTAGLLQPLSIPEWKWE 60
            +HPG   +   + + F WK +++ +  +V  C  CQ  K+   K  G LQP+   E  WE
Sbjct: 926  IHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPWE 985

Query: 61   NIAMDFIVGLPKTPKGYIVIWVVVDRLTKSAHFLPGKVTYTVDNWAQLYVKEIVRLHGVP 120
            +++MDFI  LP++  GY  ++VVVDR +K A  +P   + T +  A+++ + ++   G P
Sbjct: 986  SLSMDFITALPES-SGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNP 1045

Query: 121  VSIVSDRDPRFTSAFWRGLQKALGTRLDFSTAFHPQTDGQTEHLNQILEDMLRACVLDFK 180
              I++D D  FTS  W+         + FS  + PQTDGQTE  NQ +E +LR       
Sbjct: 1046 KEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHP 1105

Query: 181  ESWDSKLHLMEFSYNNSFQATIGMAPFEALYG-KRCRSPLCWDEVGEKELVGPELVRLTN 240
             +W   + L++ SYNN+  +   M PFE ++      SPL      +K     E  + T 
Sbjct: 1106 NTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPLELPSFSDKT---DENSQETI 1165

Query: 241  EAVQKIRARMRTAQSRQKSYADVRRKSL-EFEVGDPVFLKVAPMKGVLRYGHK-GKLSPK 300
            +  Q ++  + T   + K Y D++ + + EF+ GD V +K    +    + HK  KL+P 
Sbjct: 1166 QVFQTVKEHLNTNNIKMKKYFDMKIQEIEEFQPGDLVMVK----RTKTGFLHKSNKLAPS 1225

Query: 301  FIGPFEILERVGPVAYKLALPPALSGV-HDVFHVSMLRKY 337
            F GPF +L++ GP  Y+L LP ++  +    FHVS L KY
Sbjct: 1226 FAGPFYVLQKSGPNNYELDLPDSIKHMFSSTFHVSHLEKY 1257

[Close]

BLAST of CmoCh10G011030.1 vs. TrEMBL
Match: Q84KB0_CUCME (Pol protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 611.7 bits (1576), Expect = 8.9e-172
Identity = 298/406 (73.40%), Postives = 344/406 (84.73%), Query Frame = 1


Query: 1   MHPGGTKMYQDLKQHF-WWKSMKRDVAGFVSKCLVCQQVKAPRQKTAGLLQPLSIPEWKW 60
           MHPG T+     +  F   ++MKR+VA FVSKCLVCQQVKAPRQK AGLLQPLSIPEWKW
Sbjct: 513 MHPGSTEDVSGPEAGFIGGRNMKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSIPEWKW 572

Query: 61  ENIAMDFIVGLPKTPKGYIVIWVVVDRLTKSAHFLPGKVTYTVDNWAQLYVKEIVRLHGV 120
           EN++MDFI GLP+T +G+ VIWVVVDRLTKSAHF+PGK TYT   WAQLY+ EIVRLHGV
Sbjct: 573 ENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGV 632

Query: 121 PVSIVSDRDPRFTSAFWRGLQKALGTRLDFSTAFHPQTDGQTEHLNQILEDMLRACVLDF 180
           PVSIVSDRD RFTS FW+GLQ A+GTRLDFSTAFHPQTDGQTE LNQ+LEDMLRAC L+F
Sbjct: 633 PVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEF 692

Query: 181 KESWDSKLHLMEFSYNNSFQATIGMAPFEALYGKRCRSPLCWDEVGEKELVGPELVRLTN 240
             SWDS LHLMEF+YNNS+QATIGMAPFEALYG+ CRSP+CW EVGE+ L+GPELV+ TN
Sbjct: 693 PGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGRCCRSPVCWGEVGEQRLMGPELVQSTN 752

Query: 241 EAVQKIRARMRTAQSRQKSYADVRRKSLEFEVGDPVFLKVAPMKGVLRYGHKGKLSPKFI 300
           EA+QKIR+RM TAQSRQKSYADVRRK LEFEVGD VFLKVAPMKGVLR+  +GKLSP+F+
Sbjct: 753 EAIQKIRSRMHTAQSRQKSYADVRRKDLEFEVGDKVFLKVAPMKGVLRFERRGKLSPRFV 812

Query: 301 GPFEILERVGPVAYKLALPPALSGVHDVFHVSMLRKYITDPIHVIDYEPLKLNEDLSYEE 360
           GPFEILER+GPVAY+LALPP+LS VHDVFHVSMLRKY+ DP HV+DYEPL+++E+LSY E
Sbjct: 813 GPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYVE 872

Query: 361 KSVRILAREVKTLRNRSIAFIKELLGRKTPKKERRTTNKEEKGRKR 406
           + V +LAR VKTLRN+ I  +K L   +  + E  T  +E+  R R
Sbjct: 873 QPVEVLARGVKTLRNKQIPLVKVLW--RNHRVEEATWEREDDMRSR 916

[Close]

BLAST of CmoCh10G011030.1 vs. TrEMBL
Match: A0A061FXC6_THECC (DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_013764 PE=4 SV=1)

HSP 1 Score: 543.9 bits (1400), Expect = 2.3e-151
Identity = 266/405 (65.68%), Postives = 321/405 (79.26%), Query Frame = 1


Query: 1   MHPGGTKMYQDLKQHFWWKSMKRDVAGFVSKCLVCQQVKAPRQKTAGLLQPLSIPEWKWE 60
           +HPG TKMYQDLK+ +WW+ +KRDVA FVSKCLVCQQVKA  QK AGLLQPL +PEWKWE
Sbjct: 39  VHPGATKMYQDLKEVYWWEGLKRDVAEFVSKCLVCQQVKAEHQKPAGLLQPLPVPEWKWE 98

Query: 61  NIAMDFIVGLPKTPKGYIVIWVVVDRLTKSAHFLPGKVTYTVDNWAQLYVKEIVRLHGVP 120
           +IAMDF+ GLP+T  GY  IW+VVDRLTKSAHFLP K TY    +A++YV EIVRLHG+P
Sbjct: 99  HIAMDFVTGLPRTSGGYDSIWIVVDRLTKSAHFLPVKTTYGAAQYARVYVDEIVRLHGIP 158

Query: 121 VSIVSDRDPRFTSAFWRGLQKALGTRLDFSTAFHPQTDGQTEHLNQILEDMLRACVLDFK 180
           +SIVSDR  +FTS FW  LQ+ALGT+LDFSTAFHPQTDGQ+E   Q LEDMLRACV+D  
Sbjct: 159 ISIVSDRGAQFTSRFWGKLQEALGTKLDFSTAFHPQTDGQSERTIQTLEDMLRACVIDLG 218

Query: 181 ESWDSKLHLMEFSYNNSFQATIGMAPFEALYGKRCRSPLCWDEVGEKELVGPELVRLTNE 240
             W+  L L+EF+YNNSFQ +I MAPFEALYG+RCRSP+ W EVGE++L+GPELV+   E
Sbjct: 219 VRWEQYLPLVEFAYNNSFQTSIQMAPFEALYGRRCRSPIGWLEVGERKLLGPELVQDATE 278

Query: 241 AVQKIRARMRTAQSRQKSYADVRRKSLEFEVGDPVFLKVAPMKGVLRYGHKGKLSPKFIG 300
            +  IR RM TAQSRQKSYAD RR+ LEF+VGD VFLKV+P KG++R+G KGKLSP++IG
Sbjct: 279 KIHMIRQRMLTAQSRQKSYADNRRRYLEFQVGDHVFLKVSPTKGIMRFGKKGKLSPRYIG 338

Query: 301 PFEILERVGPVAYKLALPPALSGVHDVFHVSMLRKYITDPIHVIDYEPLKLNEDLSYEEK 360
           PFEILE+VG VAY+LALPP LS +H VFHVSMLRKY  DP HVI YE ++L +DL+YEE+
Sbjct: 339 PFEILEKVGAVAYRLALPPDLSNIHPVFHVSMLRKYNPDPSHVIRYETIQLQDDLTYEEQ 398

Query: 361 SVRILAREVKTLRNRSIAFIKELLGRKTPKKERRTTNKEEKGRKR 406
            V IL R+VK LR++ +A +K L    T   E  T   E++ R +
Sbjct: 399 PVAILDRQVKKLRSKDVASVKVLWRNHT--SEEVTWEAEDEMRTK 441

[Close]

BLAST of CmoCh10G011030.1 vs. TrEMBL
Match: A0A061EWB7_THECC (Retrotransposon protein, Ty3-gypsy subclass, putative OS=Theobroma cacao GN=TCM_023662 PE=4 SV=1)

HSP 1 Score: 542.0 bits (1395), Expect = 8.6e-151
Identity = 265/405 (65.43%), Postives = 320/405 (79.01%), Query Frame = 1


Query: 1   MHPGGTKMYQDLKQHFWWKSMKRDVAGFVSKCLVCQQVKAPRQKTAGLLQPLSIPEWKWE 60
           +HPG TKMYQDLK+ +WW+ +KRDVA FVSKCLVCQQVKA  QK AGLLQPL +PEWKWE
Sbjct: 112 VHPGATKMYQDLKEVYWWEGLKRDVAEFVSKCLVCQQVKAEHQKPAGLLQPLPVPEWKWE 171

Query: 61  NIAMDFIVGLPKTPKGYIVIWVVVDRLTKSAHFLPGKVTYTVDNWAQLYVKEIVRLHGVP 120
           +IAMDF+ GLP+T  GY  IW+VVDRLTKSAHFLP K TY    +A++YV EIVRLHG+P
Sbjct: 172 HIAMDFVTGLPRTSGGYDSIWIVVDRLTKSAHFLPVKTTYGAAQYARVYVDEIVRLHGIP 231

Query: 121 VSIVSDRDPRFTSAFWRGLQKALGTRLDFSTAFHPQTDGQTEHLNQILEDMLRACVLDFK 180
           +SIVSDR  +FTS FW  LQ+ALGT+LDFSTAFHPQTDGQ+E   Q LEDMLRACV+D  
Sbjct: 232 ISIVSDRGAQFTSRFWGKLQEALGTKLDFSTAFHPQTDGQSERTIQTLEDMLRACVIDLG 291

Query: 181 ESWDSKLHLMEFSYNNSFQATIGMAPFEALYGKRCRSPLCWDEVGEKELVGPELVRLTNE 240
             W+  L L+EF+YNNSFQ +I MAPFEALYG+RCRSP+ W EVGE++L+GPELV+   E
Sbjct: 292 VRWEQYLPLVEFAYNNSFQTSIQMAPFEALYGRRCRSPIGWLEVGERKLLGPELVQDATE 351

Query: 241 AVQKIRARMRTAQSRQKSYADVRRKSLEFEVGDPVFLKVAPMKGVLRYGHKGKLSPKFIG 300
            +  IR RM TAQSR KSYAD RR+ LEF+VGD VFLKV+P KGV+R+G KGKLSP++IG
Sbjct: 352 KIHMIRQRMLTAQSRHKSYADNRRRDLEFQVGDHVFLKVSPTKGVMRFGKKGKLSPRYIG 411

Query: 301 PFEILERVGPVAYKLALPPALSGVHDVFHVSMLRKYITDPIHVIDYEPLKLNEDLSYEEK 360
           PFEIL++VG VAY+LALPP LS +H VFHVSMLRKY  DP HVI YE ++L +DL+YEE+
Sbjct: 412 PFEILDKVGTVAYRLALPPDLSNIHPVFHVSMLRKYNPDPSHVIRYETIQLQDDLTYEEQ 471

Query: 361 SVRILAREVKTLRNRSIAFIKELLGRKTPKKERRTTNKEEKGRKR 406
            V IL R+VK LR++ +A +K L    T   E  T   E++ R +
Sbjct: 472 PVAILDRQVKKLRSKDVASVKVLWRNHT--SEEVTWEAEDEMRTK 514

[Close]

BLAST of CmoCh10G011030.1 vs. TrEMBL
Match: A0A061EEG7_THECC (DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_018243 PE=4 SV=1)

HSP 1 Score: 542.0 bits (1395), Expect = 8.6e-151
Identity = 266/405 (65.68%), Postives = 320/405 (79.01%), Query Frame = 1


Query: 1    MHPGGTKMYQDLKQHFWWKSMKRDVAGFVSKCLVCQQVKAPRQKTAGLLQPLSIPEWKWE 60
            +HPG TKMYQDLK+ +WW+ +KRDVA FVSKCLVCQQVKA  QK AGLLQPL +PEWKWE
Sbjct: 1038 VHPGATKMYQDLKEVYWWEGLKRDVAEFVSKCLVCQQVKAEHQKPAGLLQPLPVPEWKWE 1097

Query: 61   NIAMDFIVGLPKTPKGYIVIWVVVDRLTKSAHFLPGKVTYTVDNWAQLYVKEIVRLHGVP 120
            +IAMDF+ GLP+T  GY  IW+VVDRLTKSAHFLP K TY    +A++YV EIVRLHG+P
Sbjct: 1098 HIAMDFVTGLPRTSGGYDSIWIVVDRLTKSAHFLPVKTTYGAAQYARVYVDEIVRLHGIP 1157

Query: 121  VSIVSDRDPRFTSAFWRGLQKALGTRLDFSTAFHPQTDGQTEHLNQILEDMLRACVLDFK 180
            +SIVSDR  +FTS FW  LQ+ALGT+LDFSTAFHPQTDGQ+E   Q LE MLRACV+D  
Sbjct: 1158 ISIVSDRGAQFTSRFWGKLQEALGTKLDFSTAFHPQTDGQSERTIQTLEAMLRACVIDLG 1217

Query: 181  ESWDSKLHLMEFSYNNSFQATIGMAPFEALYGKRCRSPLCWDEVGEKELVGPELVRLTNE 240
              W+  L L+EF+YNNSFQ +I MAPFEALYG+RCRSP+ W EVGE++L+GPELV+   E
Sbjct: 1218 VRWEQYLPLVEFAYNNSFQTSIQMAPFEALYGRRCRSPIGWLEVGERKLLGPELVQDATE 1277

Query: 241  AVQKIRARMRTAQSRQKSYADVRRKSLEFEVGDPVFLKVAPMKGVLRYGHKGKLSPKFIG 300
             +  IR RM TAQSRQKSYAD RR+ LEF+VGD VFLKV+P KGV+R+G KGKLSP++IG
Sbjct: 1278 KIHMIRQRMLTAQSRQKSYADNRRRDLEFQVGDHVFLKVSPTKGVMRFGKKGKLSPRYIG 1337

Query: 301  PFEILERVGPVAYKLALPPALSGVHDVFHVSMLRKYITDPIHVIDYEPLKLNEDLSYEEK 360
            PFEILE+VG VAY+LALPP LS +H VFHVSMLRKY  DP HVI YE ++L +DL+YEE+
Sbjct: 1338 PFEILEKVGAVAYRLALPPDLSNIHPVFHVSMLRKYNPDPSHVIRYETIQLQDDLTYEEQ 1397

Query: 361  SVRILAREVKTLRNRSIAFIKELLGRKTPKKERRTTNKEEKGRKR 406
             V IL R+VK LR++ +A +K L    T   E  T   E++ R +
Sbjct: 1398 PVAILDRQVKKLRSKDVASVKVLWRNHT--SEEVTWEAEDEMRTK 1440

[Close]

BLAST of CmoCh10G011030.1 vs. TrEMBL
Match: A0A061GA43_THECC (DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_028107 PE=4 SV=1)

HSP 1 Score: 541.6 bits (1394), Expect = 1.1e-150
Identity = 265/405 (65.43%), Postives = 321/405 (79.26%), Query Frame = 1


Query: 1   MHPGGTKMYQDLKQHFWWKSMKRDVAGFVSKCLVCQQVKAPRQKTAGLLQPLSIPEWKWE 60
           +HPG TKMYQDLK+ +WW+ +KRDVA FVSKCLVCQQVKA  QK AGLLQPL +PEWKWE
Sbjct: 270 VHPGATKMYQDLKEVYWWEGLKRDVAEFVSKCLVCQQVKAEHQKPAGLLQPLPVPEWKWE 329

Query: 61  NIAMDFIVGLPKTPKGYIVIWVVVDRLTKSAHFLPGKVTYTVDNWAQLYVKEIVRLHGVP 120
           +IAMDF+ GLP+T  GY  IW+VVD+LTKSAHFLP K TY   ++A++YV EIVRLHG+P
Sbjct: 330 HIAMDFVTGLPRTSGGYDSIWIVVDQLTKSAHFLPVKTTYGAAHYARVYVDEIVRLHGIP 389

Query: 121 VSIVSDRDPRFTSAFWRGLQKALGTRLDFSTAFHPQTDGQTEHLNQILEDMLRACVLDFK 180
           +SIVSDR  +FTS FW  LQ+ALGT+LDFSTAFHPQTDGQ+E   Q LEDMLRACV+D  
Sbjct: 390 ISIVSDRGAQFTSRFWGKLQEALGTKLDFSTAFHPQTDGQSERTIQTLEDMLRACVIDLG 449

Query: 181 ESWDSKLHLMEFSYNNSFQATIGMAPFEALYGKRCRSPLCWDEVGEKELVGPELVRLTNE 240
             W+  L L+EF+YNNSFQ +I MAPFEALYG+RCRSP+ W EVGE++L+GPELV+   E
Sbjct: 450 VRWEQYLPLVEFAYNNSFQTSIQMAPFEALYGRRCRSPIGWLEVGERKLLGPELVQDATE 509

Query: 241 AVQKIRARMRTAQSRQKSYADVRRKSLEFEVGDPVFLKVAPMKGVLRYGHKGKLSPKFIG 300
            +  IR RM TAQSRQKSYAD RR+ LEF+VGD VFLK +P KGV+R+G KGKLSP++IG
Sbjct: 510 KIHMIRQRMLTAQSRQKSYADNRRRDLEFQVGDHVFLKFSPTKGVMRFGKKGKLSPRYIG 569

Query: 301 PFEILERVGPVAYKLALPPALSGVHDVFHVSMLRKYITDPIHVIDYEPLKLNEDLSYEEK 360
           PF+ILE+VG VAY+LALPP LS +H VFHVSMLRKY  DP HVI YE ++L +DLSYEE+
Sbjct: 570 PFKILEKVGAVAYRLALPPDLSNIHPVFHVSMLRKYNLDPSHVIRYETIQLQDDLSYEEQ 629

Query: 361 SVRILAREVKTLRNRSIAFIKELLGRKTPKKERRTTNKEEKGRKR 406
            V IL R+VK LR++ +A +K L    T   E  T   E++ R +
Sbjct: 630 PVAILDRQVKKLRSKDVASVKVLWRNHT--SEEVTWEAEDEMRTK 672

[Close]

BLAST of CmoCh10G011030.1 vs. NCBI nr
Match: gi|28558781|gb|AAO45752.1| (pol protein [Cucumis melo subsp. melo])

HSP 1 Score: 611.7 bits (1576), Expect = 1.3e-171
Identity = 298/406 (73.40%), Postives = 344/406 (84.73%), Query Frame = 1


Query: 1   MHPGGTKMYQDLKQHF-WWKSMKRDVAGFVSKCLVCQQVKAPRQKTAGLLQPLSIPEWKW 60
           MHPG T+     +  F   ++MKR+VA FVSKCLVCQQVKAPRQK AGLLQPLSIPEWKW
Sbjct: 513 MHPGSTEDVSGPEAGFIGGRNMKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSIPEWKW 572

Query: 61  ENIAMDFIVGLPKTPKGYIVIWVVVDRLTKSAHFLPGKVTYTVDNWAQLYVKEIVRLHGV 120
           EN++MDFI GLP+T +G+ VIWVVVDRLTKSAHF+PGK TYT   WAQLY+ EIVRLHGV
Sbjct: 573 ENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGV 632

Query: 121 PVSIVSDRDPRFTSAFWRGLQKALGTRLDFSTAFHPQTDGQTEHLNQILEDMLRACVLDF 180
           PVSIVSDRD RFTS FW+GLQ A+GTRLDFSTAFHPQTDGQTE LNQ+LEDMLRAC L+F
Sbjct: 633 PVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEF 692

Query: 181 KESWDSKLHLMEFSYNNSFQATIGMAPFEALYGKRCRSPLCWDEVGEKELVGPELVRLTN 240
             SWDS LHLMEF+YNNS+QATIGMAPFEALYG+ CRSP+CW EVGE+ L+GPELV+ TN
Sbjct: 693 PGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGRCCRSPVCWGEVGEQRLMGPELVQSTN 752

Query: 241 EAVQKIRARMRTAQSRQKSYADVRRKSLEFEVGDPVFLKVAPMKGVLRYGHKGKLSPKFI 300
           EA+QKIR+RM TAQSRQKSYADVRRK LEFEVGD VFLKVAPMKGVLR+  +GKLSP+F+
Sbjct: 753 EAIQKIRSRMHTAQSRQKSYADVRRKDLEFEVGDKVFLKVAPMKGVLRFERRGKLSPRFV 812

Query: 301 GPFEILERVGPVAYKLALPPALSGVHDVFHVSMLRKYITDPIHVIDYEPLKLNEDLSYEE 360
           GPFEILER+GPVAY+LALPP+LS VHDVFHVSMLRKY+ DP HV+DYEPL+++E+LSY E
Sbjct: 813 GPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYVE 872

Query: 361 KSVRILAREVKTLRNRSIAFIKELLGRKTPKKERRTTNKEEKGRKR 406
           + V +LAR VKTLRN+ I  +K L   +  + E  T  +E+  R R
Sbjct: 873 QPVEVLARGVKTLRNKQIPLVKVLW--RNHRVEEATWEREDDMRSR 916

[Close]

BLAST of CmoCh10G011030.1 vs. NCBI nr
Match: gi|590667202|ref|XP_007037177.1| (DNA/RNA polymerases superfamily protein [Theobroma cacao])

HSP 1 Score: 543.9 bits (1400), Expect = 3.3e-151
Identity = 266/405 (65.68%), Postives = 321/405 (79.26%), Query Frame = 1


Query: 1   MHPGGTKMYQDLKQHFWWKSMKRDVAGFVSKCLVCQQVKAPRQKTAGLLQPLSIPEWKWE 60
           +HPG TKMYQDLK+ +WW+ +KRDVA FVSKCLVCQQVKA  QK AGLLQPL +PEWKWE
Sbjct: 39  VHPGATKMYQDLKEVYWWEGLKRDVAEFVSKCLVCQQVKAEHQKPAGLLQPLPVPEWKWE 98

Query: 61  NIAMDFIVGLPKTPKGYIVIWVVVDRLTKSAHFLPGKVTYTVDNWAQLYVKEIVRLHGVP 120
           +IAMDF+ GLP+T  GY  IW+VVDRLTKSAHFLP K TY    +A++YV EIVRLHG+P
Sbjct: 99  HIAMDFVTGLPRTSGGYDSIWIVVDRLTKSAHFLPVKTTYGAAQYARVYVDEIVRLHGIP 158

Query: 121 VSIVSDRDPRFTSAFWRGLQKALGTRLDFSTAFHPQTDGQTEHLNQILEDMLRACVLDFK 180
           +SIVSDR  +FTS FW  LQ+ALGT+LDFSTAFHPQTDGQ+E   Q LEDMLRACV+D  
Sbjct: 159 ISIVSDRGAQFTSRFWGKLQEALGTKLDFSTAFHPQTDGQSERTIQTLEDMLRACVIDLG 218

Query: 181 ESWDSKLHLMEFSYNNSFQATIGMAPFEALYGKRCRSPLCWDEVGEKELVGPELVRLTNE 240
             W+  L L+EF+YNNSFQ +I MAPFEALYG+RCRSP+ W EVGE++L+GPELV+   E
Sbjct: 219 VRWEQYLPLVEFAYNNSFQTSIQMAPFEALYGRRCRSPIGWLEVGERKLLGPELVQDATE 278

Query: 241 AVQKIRARMRTAQSRQKSYADVRRKSLEFEVGDPVFLKVAPMKGVLRYGHKGKLSPKFIG 300
            +  IR RM TAQSRQKSYAD RR+ LEF+VGD VFLKV+P KG++R+G KGKLSP++IG
Sbjct: 279 KIHMIRQRMLTAQSRQKSYADNRRRYLEFQVGDHVFLKVSPTKGIMRFGKKGKLSPRYIG 338

Query: 301 PFEILERVGPVAYKLALPPALSGVHDVFHVSMLRKYITDPIHVIDYEPLKLNEDLSYEEK 360
           PFEILE+VG VAY+LALPP LS +H VFHVSMLRKY  DP HVI YE ++L +DL+YEE+
Sbjct: 339 PFEILEKVGAVAYRLALPPDLSNIHPVFHVSMLRKYNPDPSHVIRYETIQLQDDLTYEEQ 398

Query: 361 SVRILAREVKTLRNRSIAFIKELLGRKTPKKERRTTNKEEKGRKR 406
            V IL R+VK LR++ +A +K L    T   E  T   E++ R +
Sbjct: 399 PVAILDRQVKKLRSKDVASVKVLWRNHT--SEEVTWEAEDEMRTK 441

[Close]

BLAST of CmoCh10G011030.1 vs. NCBI nr
Match: gi|590633659|ref|XP_007028165.1| (Retrotransposon protein, Ty3-gypsy subclass, putative [Theobroma cacao])

HSP 1 Score: 542.0 bits (1395), Expect = 1.2e-150
Identity = 265/405 (65.43%), Postives = 320/405 (79.01%), Query Frame = 1


Query: 1   MHPGGTKMYQDLKQHFWWKSMKRDVAGFVSKCLVCQQVKAPRQKTAGLLQPLSIPEWKWE 60
           +HPG TKMYQDLK+ +WW+ +KRDVA FVSKCLVCQQVKA  QK AGLLQPL +PEWKWE
Sbjct: 112 VHPGATKMYQDLKEVYWWEGLKRDVAEFVSKCLVCQQVKAEHQKPAGLLQPLPVPEWKWE 171

Query: 61  NIAMDFIVGLPKTPKGYIVIWVVVDRLTKSAHFLPGKVTYTVDNWAQLYVKEIVRLHGVP 120
           +IAMDF+ GLP+T  GY  IW+VVDRLTKSAHFLP K TY    +A++YV EIVRLHG+P
Sbjct: 172 HIAMDFVTGLPRTSGGYDSIWIVVDRLTKSAHFLPVKTTYGAAQYARVYVDEIVRLHGIP 231

Query: 121 VSIVSDRDPRFTSAFWRGLQKALGTRLDFSTAFHPQTDGQTEHLNQILEDMLRACVLDFK 180
           +SIVSDR  +FTS FW  LQ+ALGT+LDFSTAFHPQTDGQ+E   Q LEDMLRACV+D  
Sbjct: 232 ISIVSDRGAQFTSRFWGKLQEALGTKLDFSTAFHPQTDGQSERTIQTLEDMLRACVIDLG 291

Query: 181 ESWDSKLHLMEFSYNNSFQATIGMAPFEALYGKRCRSPLCWDEVGEKELVGPELVRLTNE 240
             W+  L L+EF+YNNSFQ +I MAPFEALYG+RCRSP+ W EVGE++L+GPELV+   E
Sbjct: 292 VRWEQYLPLVEFAYNNSFQTSIQMAPFEALYGRRCRSPIGWLEVGERKLLGPELVQDATE 351

Query: 241 AVQKIRARMRTAQSRQKSYADVRRKSLEFEVGDPVFLKVAPMKGVLRYGHKGKLSPKFIG 300
            +  IR RM TAQSR KSYAD RR+ LEF+VGD VFLKV+P KGV+R+G KGKLSP++IG
Sbjct: 352 KIHMIRQRMLTAQSRHKSYADNRRRDLEFQVGDHVFLKVSPTKGVMRFGKKGKLSPRYIG 411

Query: 301 PFEILERVGPVAYKLALPPALSGVHDVFHVSMLRKYITDPIHVIDYEPLKLNEDLSYEEK 360
           PFEIL++VG VAY+LALPP LS +H VFHVSMLRKY  DP HVI YE ++L +DL+YEE+
Sbjct: 412 PFEILDKVGTVAYRLALPPDLSNIHPVFHVSMLRKYNPDPSHVIRYETIQLQDDLTYEEQ 471

Query: 361 SVRILAREVKTLRNRSIAFIKELLGRKTPKKERRTTNKEEKGRKR 406
            V IL R+VK LR++ +A +K L    T   E  T   E++ R +
Sbjct: 472 PVAILDRQVKKLRSKDVASVKVLWRNHT--SEEVTWEAEDEMRTK 514

[Close]

BLAST of CmoCh10G011030.1 vs. NCBI nr
Match: gi|590649404|ref|XP_007032400.1| (DNA/RNA polymerases superfamily protein [Theobroma cacao])

HSP 1 Score: 542.0 bits (1395), Expect = 1.2e-150
Identity = 266/405 (65.68%), Postives = 320/405 (79.01%), Query Frame = 1


Query: 1    MHPGGTKMYQDLKQHFWWKSMKRDVAGFVSKCLVCQQVKAPRQKTAGLLQPLSIPEWKWE 60
            +HPG TKMYQDLK+ +WW+ +KRDVA FVSKCLVCQQVKA  QK AGLLQPL +PEWKWE
Sbjct: 1038 VHPGATKMYQDLKEVYWWEGLKRDVAEFVSKCLVCQQVKAEHQKPAGLLQPLPVPEWKWE 1097

Query: 61   NIAMDFIVGLPKTPKGYIVIWVVVDRLTKSAHFLPGKVTYTVDNWAQLYVKEIVRLHGVP 120
            +IAMDF+ GLP+T  GY  IW+VVDRLTKSAHFLP K TY    +A++YV EIVRLHG+P
Sbjct: 1098 HIAMDFVTGLPRTSGGYDSIWIVVDRLTKSAHFLPVKTTYGAAQYARVYVDEIVRLHGIP 1157

Query: 121  VSIVSDRDPRFTSAFWRGLQKALGTRLDFSTAFHPQTDGQTEHLNQILEDMLRACVLDFK 180
            +SIVSDR  +FTS FW  LQ+ALGT+LDFSTAFHPQTDGQ+E   Q LE MLRACV+D  
Sbjct: 1158 ISIVSDRGAQFTSRFWGKLQEALGTKLDFSTAFHPQTDGQSERTIQTLEAMLRACVIDLG 1217

Query: 181  ESWDSKLHLMEFSYNNSFQATIGMAPFEALYGKRCRSPLCWDEVGEKELVGPELVRLTNE 240
              W+  L L+EF+YNNSFQ +I MAPFEALYG+RCRSP+ W EVGE++L+GPELV+   E
Sbjct: 1218 VRWEQYLPLVEFAYNNSFQTSIQMAPFEALYGRRCRSPIGWLEVGERKLLGPELVQDATE 1277

Query: 241  AVQKIRARMRTAQSRQKSYADVRRKSLEFEVGDPVFLKVAPMKGVLRYGHKGKLSPKFIG 300
             +  IR RM TAQSRQKSYAD RR+ LEF+VGD VFLKV+P KGV+R+G KGKLSP++IG
Sbjct: 1278 KIHMIRQRMLTAQSRQKSYADNRRRDLEFQVGDHVFLKVSPTKGVMRFGKKGKLSPRYIG 1337

Query: 301  PFEILERVGPVAYKLALPPALSGVHDVFHVSMLRKYITDPIHVIDYEPLKLNEDLSYEEK 360
            PFEILE+VG VAY+LALPP LS +H VFHVSMLRKY  DP HVI YE ++L +DL+YEE+
Sbjct: 1338 PFEILEKVGAVAYRLALPPDLSNIHPVFHVSMLRKYNPDPSHVIRYETIQLQDDLTYEEQ 1397

Query: 361  SVRILAREVKTLRNRSIAFIKELLGRKTPKKERRTTNKEEKGRKR 406
             V IL R+VK LR++ +A +K L    T   E  T   E++ R +
Sbjct: 1398 PVAILDRQVKKLRSKDVASVKVLWRNHT--SEEVTWEAEDEMRTK 1440

[Close]

BLAST of CmoCh10G011030.1 vs. NCBI nr
Match: gi|590617570|ref|XP_007023829.1| (DNA/RNA polymerases superfamily protein [Theobroma cacao])

HSP 1 Score: 541.6 bits (1394), Expect = 1.6e-150
Identity = 265/405 (65.43%), Postives = 321/405 (79.26%), Query Frame = 1


Query: 1   MHPGGTKMYQDLKQHFWWKSMKRDVAGFVSKCLVCQQVKAPRQKTAGLLQPLSIPEWKWE 60
           +HPG TKMYQDLK+ +WW+ +KRDVA FVSKCLVCQQVKA  QK AGLLQPL +PEWKWE
Sbjct: 270 VHPGATKMYQDLKEVYWWEGLKRDVAEFVSKCLVCQQVKAEHQKPAGLLQPLPVPEWKWE 329

Query: 61  NIAMDFIVGLPKTPKGYIVIWVVVDRLTKSAHFLPGKVTYTVDNWAQLYVKEIVRLHGVP 120
           +IAMDF+ GLP+T  GY  IW+VVD+LTKSAHFLP K TY   ++A++YV EIVRLHG+P
Sbjct: 330 HIAMDFVTGLPRTSGGYDSIWIVVDQLTKSAHFLPVKTTYGAAHYARVYVDEIVRLHGIP 389

Query: 121 VSIVSDRDPRFTSAFWRGLQKALGTRLDFSTAFHPQTDGQTEHLNQILEDMLRACVLDFK 180
           +SIVSDR  +FTS FW  LQ+ALGT+LDFSTAFHPQTDGQ+E   Q LEDMLRACV+D  
Sbjct: 390 ISIVSDRGAQFTSRFWGKLQEALGTKLDFSTAFHPQTDGQSERTIQTLEDMLRACVIDLG 449

Query: 181 ESWDSKLHLMEFSYNNSFQATIGMAPFEALYGKRCRSPLCWDEVGEKELVGPELVRLTNE 240
             W+  L L+EF+YNNSFQ +I MAPFEALYG+RCRSP+ W EVGE++L+GPELV+   E
Sbjct: 450 VRWEQYLPLVEFAYNNSFQTSIQMAPFEALYGRRCRSPIGWLEVGERKLLGPELVQDATE 509

Query: 241 AVQKIRARMRTAQSRQKSYADVRRKSLEFEVGDPVFLKVAPMKGVLRYGHKGKLSPKFIG 300
            +  IR RM TAQSRQKSYAD RR+ LEF+VGD VFLK +P KGV+R+G KGKLSP++IG
Sbjct: 510 KIHMIRQRMLTAQSRQKSYADNRRRDLEFQVGDHVFLKFSPTKGVMRFGKKGKLSPRYIG 569

Query: 301 PFEILERVGPVAYKLALPPALSGVHDVFHVSMLRKYITDPIHVIDYEPLKLNEDLSYEEK 360
           PF+ILE+VG VAY+LALPP LS +H VFHVSMLRKY  DP HVI YE ++L +DLSYEE+
Sbjct: 570 PFKILEKVGAVAYRLALPPDLSNIHPVFHVSMLRKYNLDPSHVIRYETIQLQDDLSYEEQ 629

Query: 361 SVRILAREVKTLRNRSIAFIKELLGRKTPKKERRTTNKEEKGRKR 406
            V IL R+VK LR++ +A +K L    T   E  T   E++ R +
Sbjct: 630 PVAILDRQVKKLRSKDVASVKVLWRNHT--SEEVTWEAEDEMRTK 672

The following BLAST results are available for this feature:

BLAST of CmoCh10G011030.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TF211_SCHPO	3.4e-47	32.65	Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
TF29_SCHPO	3.4e-47	32.65	Transposon Tf2-9 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
TF28_SCHPO	3.4e-47	32.65	Transposon Tf2-8 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
TF27_SCHPO	3.4e-47	32.65	Transposon Tf2-7 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
TF26_SCHPO	3.4e-47	32.65	Transposon Tf2-6 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]

BLAST of CmoCh10G011030.1 vs. TrEMBL


Match Name	E-value	Identity	Description
Q84KB0_CUCME	8.9e-172	73.40	Pol protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
A0A061FXC6_THECC	2.3e-151	65.68	DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_013764 PE=4 SV...	[more]
A0A061EWB7_THECC	8.6e-151	65.43	Retrotransposon protein, Ty3-gypsy subclass, putative OS=Theobroma cacao GN=TCM_...	[more]
A0A061EEG7_THECC	8.6e-151	65.68	DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_018243 PE=4 SV...	[more]
A0A061GA43_THECC	1.1e-150	65.43	DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_028107 PE=4 SV...	[more]

BLAST of CmoCh10G011030.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh10G011030.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|28558781\|gb\|AAO45752.1\|	1.3e-171	73.40	pol protein [Cucumis melo subsp. melo]	[more]
gi\|590667202\|ref\|XP_007037177.1\|	3.3e-151	65.68	DNA/RNA polymerases superfamily protein [Theobroma cacao]	[more]
gi\|590633659\|ref\|XP_007028165.1\|	1.2e-150	65.43	Retrotransposon protein, Ty3-gypsy subclass, putative [Theobroma cacao]	[more]
gi\|590649404\|ref\|XP_007032400.1\|	1.2e-150	65.68	DNA/RNA polymerases superfamily protein [Theobroma cacao]	[more]
gi\|590617570\|ref\|XP_007023829.1\|	1.6e-150	65.43	DNA/RNA polymerases superfamily protein [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR001584	Integrase_cat-core
IPR012337	RNaseH-like_sf

Vocabulary: **Biological Process**
Term	Definition
GO:0015074	DNA integration

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0008270	zinc ion binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh10G011030	CmoCh10G011030	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh10G011030.1	CmoCh10G011030.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh10G011030.1.exon.1	CmoCh10G011030.1.exon.1	exon
CmoCh10G011030.1.exon.2	CmoCh10G011030.1.exon.2	exon
CmoCh10G011030.1.exon.3	CmoCh10G011030.1.exon.3	exon
CmoCh10G011030.1.exon.4	CmoCh10G011030.1.exon.4	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh10G011030.1.CDS.1	CmoCh10G011030.1.CDS.1	CDS
CmoCh10G011030.1.CDS.2	CmoCh10G011030.1.CDS.2	CDS
CmoCh10G011030.1.CDS.3	CmoCh10G011030.1.CDS.3	CDS
CmoCh10G011030.1.CDS.4	CmoCh10G011030.1.CDS.4	CDS

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001584	Integrase, catalytic core	PFAM	PF00665	rve	coord: 62..171 score: 1.1
IPR001584	Integrase, catalytic core	PROFILE	PS50994	INTEGRASE	coord: 51..214 score: 19
IPR012337	Ribonuclease H-like domain	GENE3D	G3DSA:3.30.420.10		coord: 59..218 score: 1.3
IPR012337	Ribonuclease H-like domain	unknown	SSF53098	Ribonuclease H-like	coord: 52..210 score: 2.28
None	No IPR available	PANTHER	PTHR24559	FAMILY NOT NAMED	coord: 1..381 score: 2.1E
None	No IPR available	PANTHER	PTHR24559:SF207	SUBFAMILY NOT NAMED	coord: 1..381 score: 2.1E