CmoCh10G011030 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh10G011030
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Retrotransposon protein, Ty3-gypsy subclass, putative
Location	Cmo_Chr10 : 6373599 .. 6377084 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATCCAGGAGGTACTAAGATGTACCAAGATTTAAAACAACACTTTTGGTGGAAGAGCATGAAGAGGGATGTGGCCGGGTTTGTGAGCAAGTGCTTAGTTTGTCAACAAGTGAAAGCTCCAAGACAAAAAACGGCGGGGTTGTTGCAGCCCCTAAGCATACCAGAGTGGAAGTGGGAAAACATAGCGATGGACTTCATAGTAGGTTTACCCAAAACGCCCAAGGGCTATATAGTGATCTGGGTAGTTGTCGATAGGTTGACCAAGTCGGCACACTTTCTACCTGGGAAGGTTACATATACAGTTGACAATTGGGCACAACTGTACGTGAAAGAAATAGTAAGACTACATGGAGTCCCAGTGTCTATAGTGTCGGATCGGGATCCACGCTTTACGTCAGCGTTTTGGCGCGGACTTCAAAAAGCACTGGGTACCCGCCTCGACTTTAGTACCGCCTTTCACCCCCAAACAGATGGACAAACGGAGCATTTAAACCAAATTCTAGAGGACATGCTACGCGCTTGCGTACTAGATTTTAAGGAAAGTTGGGATTCCAAACTACACCTAATGGAATTCTCGTATAACAACAGTTTCCAAGCAACTATTGGAATGGCACCGTTTGAGGCCCTGTACGGGAAACGGTGTAGGTCCCCACTATGTTGGGACGAGGTAGGAGAGAAAGAATTAGTAGGACCCGAGTTGGTTCGACTCACCAATGAGGCTGTCCAGAAAATTCGAGCGAGGATGCGTACCGCTCAAAGTAGACAGAAAAGCTACGCCGATGTAAGGCGTAAAAGCCTGGAGTTTGAGGTGGGGGACCCAGTATTCCTCAAGGTGGCACCTATGAAAGGTGTGTTAAGATACGGACATAAGGGCAAGTTAAGTCCTAAATTCATTGGACCATTCGAGATCCTAGAGCGGGTTGGTCCGGTAGCGTATAAGTTAGCCTTACCTCCAGCCCTCTCAGGAGTACATGACGTATTTCATGTGTCGATGTTGAGGAAGTACATTACGGATCCTATCCACGTAATAGACTACGAACCACTCAAACTCAATGAAGATCTGAGCTACGAGGAAAAATCAGTAAGAATCTTAGCTAGAGAAGTAAAAACCTTACGCAACAGGAGTATTGCGTTCATTAAGGTACTGTGGCGGAATCACCACAGTGAGGAAGCCACGTGGGAGCGTGAGGACGAGATAAGAGAGAAATACCCCGAGTTGGTACAAGAGTTTGAGACTTTCAAGGACGAAAGTTATTTTTAGGGGTAGATAATGTAACGACCCGGGAAAGAAAGAAAGAAAAAGAAAATATATATATAAATNNNNNNNNNNAAAAAAAAAAAAAAAAAACCCAGTCGCCGAAAAACCCGCGAGTTTTCTGGCGACCGCCGAGTTTCGCGAAACGACGGCCACAGCACGCCCACCCTCAGCCCAGCATCTTCAGAACACCTACAAAGGGAGAAAAGAGAGAAAATTTGGAGAGAGAGAGAGAGAGATTTCGGACAAACGTCGGCGAGTGTTCAGTTTCTCCGACGAGCCCTCAAACCACCCTTAAACCGACACCAAACGACCTGTTACTACCGTAAGAGAGATCCCTAACGAAAGCACAATAACTCAGGGTGCATTTTGTGTTATTTCGTAAGCATCGTCGTCGGTAACCGAGGTCGGAAAGTTAGGTTTCTTAATCGATTCTTAGATCTATGGCTTTTAGGAGCTTTTAGGCCGCAAAACTCCCAAAAAGGAAAGAAGGACGACGAACAAAGAGGAAAAGGGAAGGAAGAGGACCGAAATCGGCAACGGAAACGCCGCGGGAAGGAGAGAGAAAACTCGCCAGAAAATCGGCCAAAGTCGAGTAAGGAAGACGAGATCCACGGATCCGGGTCAACCCGAACCCAGAACCCGGGAAAGCCAGCCCGTTCCTCCCTTGGCCTCTGCCTTCGGCCCAGCCCAACTACAGCGGCCCAAACCTCAAACCGGCCCAGAAGCTACGGTTCAGTTGAACCAACCCAGACTAGACCCACGGTCCAATTGAACCGGCCTGCAAACCAAACACTTGCGGCCCAGGCCAGTAAGCCGAGGCCCAACGTTTAGCCTTGGCCCAGTAGCCTTCCACAGCCCGCGACCCGAACCACCACCCGAACCGGACTGCGACCCGCGCTTCGACCCGACACTACCGCCCGACGTGGCTTTCTCTGTTGCTGCCACGTGTCACACAGCGGCGCGGTAGTCCTCGGCTCGGCTCGGCGCAAACGGCTCAGGCTCCCTCCGGTGACGCTCCGGCGGCTCCTTCGGCGGCTCCAGCGGCTGTTCGGCTCGGCTCACCTGTTTTCAGCCCGGTTTCCACTGTTTCGACCCTCCCGAATCTGTTTTCGGCCCCAATTAAGGTATCCGAGGCCATTTTAGAGCCGTATTTCAGATTTATTAAATTAGGTAAATTAATTGTGAAATACTAACGGAAAGTGGTGAACGGTGTGATAGGAAACAAACCCCAGCGAAGTAGGAAGCAGCTCTCACGGAACGGGAGCTTACGTTTAGCTATTTAGGGAGTACTTCGGCCGAGGCCAACCAAGTAAGTGACCTTACTATATGATAGGCTAAAAATTGTATGAGTTACAATATTGTATGAACTATGTCGTACGATGCGGTATATGAGTTATGATGATGTGTGGGTCATAATACCTGATGATGTACTCAGTATATATATATATTTTGATGAATGTCGTACTTGATATGTTTGATGCACTTTGTGGCAATATGATGAGTATGATGATTGCGTGATGTTTACCTTAATATGATGATGTTTTCCATATTGAGCATGTTATATGATGATGAGTGCCATATTGCATCATGTCGTTAGATCGACATAGGACACAACCCTAAGAGCGTGAAAATGATATTAATATAAATATCCACGAGTATGTGTTACCTAGAGTAACAAAGAGATGAGACTAGAGGGTTGCGTCAGAAGAGACATTATGATGGATTTAGAGGGACCTCATGCATATTGTATGTTCATAAGCATAGGGCTACTTCCCCTAGAGATGATGAGTGCGGACGCGCACCGTATGATGAGCGCGTATGCGCACAGGTGTGAAAGCACACAGATGAGGGTGTTCATGAGGTGCATGACACTATGGGGTTCCGCTGACCTCCGGACGTCGCTACAGATTAGCTTGACCAGAGGGTCCAGGGGGTGTGCGAGCGCCCTGGGGATTCACACTCGCACGTGTGAGTCGTGTGTAGGGAAGTACTACACATCCAATTTGTCCGAGACTGGAGGCCACCCCTAAGATGATTAGAGATAGGTCCCTAAATCATGATTGCATGTGTTTGCATTTGCATGGCCCCCTATAGTGGAGCCACTTACTGAGTATTCTTTGAAATACTCAGGCCGTGTGCCACATCATTTTTCAGGTAAAGGCGAGGCGCACTTGTACAGAAGACGGCGGCATCGCGAGCAGAGACTGTGGCACGTGCATAGGGTAG

mRNA sequence

ATGCATCCAGGAGGTACTAAGATGTACCAAGATTTAAAACAACACTTTTGGTGGAAGAGCATGAAGAGGGATGTGGCCGGGTTTGTGAGCAAGTGCTTAGTTTGTCAACAAGTGAAAGCTCCAAGACAAAAAACGGCGGGGTTGTTGCAGCCCCTAAGCATACCAGAGTGGAAGTGGGAAAACATAGCGATGGACTTCATAGTAGGTTTACCCAAAACGCCCAAGGGCTATATAGTGATCTGGGTAGTTGTCGATAGGTTGACCAAGTCGGCACACTTTCTACCTGGGAAGGTTACATATACAGTTGACAATTGGGCACAACTGTACGTGAAAGAAATAGTAAGACTACATGGAGTCCCAGTGTCTATAGTGTCGGATCGGGATCCACGCTTTACGTCAGCGTTTTGGCGCGGACTTCAAAAAGCACTGGGTACCCGCCTCGACTTTAGTACCGCCTTTCACCCCCAAACAGATGGACAAACGGAGCATTTAAACCAAATTCTAGAGGACATGCTACGCGCTTGCGTACTAGATTTTAAGGAAAGTTGGGATTCCAAACTACACCTAATGGAATTCTCGTATAACAACAGTTTCCAAGCAACTATTGGAATGGCACCGTTTGAGGCCCTGTACGGGAAACGGTGTAGGTCCCCACTATGTTGGGACGAGGTAGGAGAGAAAGAATTAGTAGGACCCGAGTTGGTTCGACTCACCAATGAGGCTGTCCAGAAAATTCGAGCGAGGATGCGTACCGCTCAAAGTAGACAGAAAAGCTACGCCGATGTAAGGCGTAAAAGCCTGGAGTTTGAGGTGGGGGACCCAGTATTCCTCAAGGTGGCACCTATGAAAGGTGTGTTAAGATACGGACATAAGGGCAAGTTAAGTCCTAAATTCATTGGACCATTCGAGATCCTAGAGCGGGTTGGTCCGGTAGCGTATAAGTTAGCCTTACCTCCAGCCCTCTCAGGAGTACATGACGTATTTCATGTGTCGATGTTGAGGAAGTACATTACGGATCCTATCCACGTAATAGACTACGAACCACTCAAACTCAATGAAGATCTGAGCTACGAGGAAAAATCAGTAAGAATCTTAGCTAGAGAAGTAAAAACCTTACGCAACAGGAGTATTGCGTTCATTAAGGAGCTTTTAGGCCGCAAAACTCCCAAAAAGGAAAGAAGGACGACGAACAAAGAGGAAAAGGGAAGGAAGAGGACCGAAATCGGCAACGGAAACGCCGCGGGAAGGAGAGAGAAAACTCGCCAGAAAATCGGCCAAAGTCGACCTTCCACAGCCCGCGACCCGAACCACCACCCGAACCGGACTGCGACCCGCGCTTCGACCCGACACTACCGCCCGACGTGGCTTTCTCTGTTGCTGCCACGTGTCACACAGCGGCGCGGTAGTCCTCGGCTCGGCTCGGCGCAAACGGCTCAGGCTCCCTCCGGTGACGCTCCGGCGGCTCCTTCGGCGGCTCCAGCGGCTGTTCGGCTCGGCTCACCTGTTTTCAGCCCGGTTTCCACTGTTTCGACCCTCCCGAATCTGTTTTCGGCCCCAATTAAGGCCGTGTGCCACATCATTTTTCAGGTAAAGGCGAGGCGCACTTGTACAGAAGACGGCGGCATCGCGAGCAGAGACTGTGGCACGTGCATAGGGTAG

Coding sequence (CDS)

ATGCATCCAGGAGGTACTAAGATGTACCAAGATTTAAAACAACACTTTTGGTGGAAGAGCATGAAGAGGGATGTGGCCGGGTTTGTGAGCAAGTGCTTAGTTTGTCAACAAGTGAAAGCTCCAAGACAAAAAACGGCGGGGTTGTTGCAGCCCCTAAGCATACCAGAGTGGAAGTGGGAAAACATAGCGATGGACTTCATAGTAGGTTTACCCAAAACGCCCAAGGGCTATATAGTGATCTGGGTAGTTGTCGATAGGTTGACCAAGTCGGCACACTTTCTACCTGGGAAGGTTACATATACAGTTGACAATTGGGCACAACTGTACGTGAAAGAAATAGTAAGACTACATGGAGTCCCAGTGTCTATAGTGTCGGATCGGGATCCACGCTTTACGTCAGCGTTTTGGCGCGGACTTCAAAAAGCACTGGGTACCCGCCTCGACTTTAGTACCGCCTTTCACCCCCAAACAGATGGACAAACGGAGCATTTAAACCAAATTCTAGAGGACATGCTACGCGCTTGCGTACTAGATTTTAAGGAAAGTTGGGATTCCAAACTACACCTAATGGAATTCTCGTATAACAACAGTTTCCAAGCAACTATTGGAATGGCACCGTTTGAGGCCCTGTACGGGAAACGGTGTAGGTCCCCACTATGTTGGGACGAGGTAGGAGAGAAAGAATTAGTAGGACCCGAGTTGGTTCGACTCACCAATGAGGCTGTCCAGAAAATTCGAGCGAGGATGCGTACCGCTCAAAGTAGACAGAAAAGCTACGCCGATGTAAGGCGTAAAAGCCTGGAGTTTGAGGTGGGGGACCCAGTATTCCTCAAGGTGGCACCTATGAAAGGTGTGTTAAGATACGGACATAAGGGCAAGTTAAGTCCTAAATTCATTGGACCATTCGAGATCCTAGAGCGGGTTGGTCCGGTAGCGTATAAGTTAGCCTTACCTCCAGCCCTCTCAGGAGTACATGACGTATTTCATGTGTCGATGTTGAGGAAGTACATTACGGATCCTATCCACGTAATAGACTACGAACCACTCAAACTCAATGAAGATCTGAGCTACGAGGAAAAATCAGTAAGAATCTTAGCTAGAGAAGTAAAAACCTTACGCAACAGGAGTATTGCGTTCATTAAGGAGCTTTTAGGCCGCAAAACTCCCAAAAAGGAAAGAAGGACGACGAACAAAGAGGAAAAGGGAAGGAAGAGGACCGAAATCGGCAACGGAAACGCCGCGGGAAGGAGAGAGAAAACTCGCCAGAAAATCGGCCAAAGTCGACCTTCCACAGCCCGCGACCCGAACCACCACCCGAACCGGACTGCGACCCGCGCTTCGACCCGACACTACCGCCCGACGTGGCTTTCTCTGTTGCTGCCACGTGTCACACAGCGGCGCGGTAGTCCTCGGCTCGGCTCGGCGCAAACGGCTCAGGCTCCCTCCGGTGACGCTCCGGCGGCTCCTTCGGCGGCTCCAGCGGCTGTTCGGCTCGGCTCACCTGTTTTCAGCCCGGTTTCCACTGTTTCGACCCTCCCGAATCTGTTTTCGGCCCCAATTAAGGCCGTGTGCCACATCATTTTTCAGGTAAAGGCGAGGCGCACTTGTACAGAAGACGGCGGCATCGCGAGCAGAGACTGTGGCACGTGCATAGGGTAG

Homology

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BLAST of CmoCh10G011030 vs. Swiss-Prot
Match: TF211_SCHPO (Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-11 PE=3 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 3.4e-47
Identity = 111/340 (32.65%), Postives = 177/340 (52.06%), Query Frame = 1


Query: 1    MHPGGTKMYQDLKQHFWWKSMKRDVAGFVSKCLVCQQVKAPRQKTAGLLQPLSIPEWKWE 60
            +HPG   +   + + F WK +++ +  +V  C  CQ  K+   K  G LQP+   E  WE
Sbjct: 926  IHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPWE 985

Query: 61   NIAMDFIVGLPKTPKGYIVIWVVVDRLTKSAHFLPGKVTYTVDNWAQLYVKEIVRLHGVP 120
            +++MDFI  LP++  GY  ++VVVDR +K A  +P   + T +  A+++ + ++   G P
Sbjct: 986  SLSMDFITALPES-SGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNP 1045

Query: 121  VSIVSDRDPRFTSAFWRGLQKALGTRLDFSTAFHPQTDGQTEHLNQILEDMLRACVLDFK 180
              I++D D  FTS  W+         + FS  + PQTDGQTE  NQ +E +LR       
Sbjct: 1046 KEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHP 1105

Query: 181  ESWDSKLHLMEFSYNNSFQATIGMAPFEALYG-KRCRSPLCWDEVGEKELVGPELVRLTN 240
             +W   + L++ SYNN+  +   M PFE ++      SPL      +K     E  + T 
Sbjct: 1106 NTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPLELPSFSDKT---DENSQETI 1165

Query: 241  EAVQKIRARMRTAQSRQKSYADVRRKSL-EFEVGDPVFLKVAPMKGVLRYGHK-GKLSPK 300
            +  Q ++  + T   + K Y D++ + + EF+ GD V +K    +    + HK  KL+P 
Sbjct: 1166 QVFQTVKEHLNTNNIKMKKYFDMKIQEIEEFQPGDLVMVK----RTKTGFLHKSNKLAPS 1225

Query: 301  FIGPFEILERVGPVAYKLALPPALSGV-HDVFHVSMLRKY 337
            F GPF +L++ GP  Y+L LP ++  +    FHVS L KY
Sbjct: 1226 FAGPFYVLQKSGPNNYELDLPDSIKHMFSSTFHVSHLEKY 1257

[Close]

BLAST of CmoCh10G011030 vs. Swiss-Prot
Match: TF29_SCHPO (Transposon Tf2-9 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-9 PE=3 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 3.4e-47
Identity = 111/340 (32.65%), Postives = 177/340 (52.06%), Query Frame = 1


Query: 1    MHPGGTKMYQDLKQHFWWKSMKRDVAGFVSKCLVCQQVKAPRQKTAGLLQPLSIPEWKWE 60
            +HPG   +   + + F WK +++ +  +V  C  CQ  K+   K  G LQP+   E  WE
Sbjct: 926  IHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPWE 985

Query: 61   NIAMDFIVGLPKTPKGYIVIWVVVDRLTKSAHFLPGKVTYTVDNWAQLYVKEIVRLHGVP 120
            +++MDFI  LP++  GY  ++VVVDR +K A  +P   + T +  A+++ + ++   G P
Sbjct: 986  SLSMDFITALPES-SGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNP 1045

Query: 121  VSIVSDRDPRFTSAFWRGLQKALGTRLDFSTAFHPQTDGQTEHLNQILEDMLRACVLDFK 180
              I++D D  FTS  W+         + FS  + PQTDGQTE  NQ +E +LR       
Sbjct: 1046 KEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHP 1105

Query: 181  ESWDSKLHLMEFSYNNSFQATIGMAPFEALYG-KRCRSPLCWDEVGEKELVGPELVRLTN 240
             +W   + L++ SYNN+  +   M PFE ++      SPL      +K     E  + T 
Sbjct: 1106 NTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPLELPSFSDKT---DENSQETI 1165

Query: 241  EAVQKIRARMRTAQSRQKSYADVRRKSL-EFEVGDPVFLKVAPMKGVLRYGHK-GKLSPK 300
            +  Q ++  + T   + K Y D++ + + EF+ GD V +K    +    + HK  KL+P 
Sbjct: 1166 QVFQTVKEHLNTNNIKMKKYFDMKIQEIEEFQPGDLVMVK----RTKTGFLHKSNKLAPS 1225

Query: 301  FIGPFEILERVGPVAYKLALPPALSGV-HDVFHVSMLRKY 337
            F GPF +L++ GP  Y+L LP ++  +    FHVS L KY
Sbjct: 1226 FAGPFYVLQKSGPNNYELDLPDSIKHMFSSTFHVSHLEKY 1257

[Close]

BLAST of CmoCh10G011030 vs. Swiss-Prot
Match: TF28_SCHPO (Transposon Tf2-8 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-8 PE=3 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 3.4e-47
Identity = 111/340 (32.65%), Postives = 177/340 (52.06%), Query Frame = 1


Query: 1    MHPGGTKMYQDLKQHFWWKSMKRDVAGFVSKCLVCQQVKAPRQKTAGLLQPLSIPEWKWE 60
            +HPG   +   + + F WK +++ +  +V  C  CQ  K+   K  G LQP+   E  WE
Sbjct: 926  IHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPWE 985

Query: 61   NIAMDFIVGLPKTPKGYIVIWVVVDRLTKSAHFLPGKVTYTVDNWAQLYVKEIVRLHGVP 120
            +++MDFI  LP++  GY  ++VVVDR +K A  +P   + T +  A+++ + ++   G P
Sbjct: 986  SLSMDFITALPES-SGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNP 1045

Query: 121  VSIVSDRDPRFTSAFWRGLQKALGTRLDFSTAFHPQTDGQTEHLNQILEDMLRACVLDFK 180
              I++D D  FTS  W+         + FS  + PQTDGQTE  NQ +E +LR       
Sbjct: 1046 KEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHP 1105

Query: 181  ESWDSKLHLMEFSYNNSFQATIGMAPFEALYG-KRCRSPLCWDEVGEKELVGPELVRLTN 240
             +W   + L++ SYNN+  +   M PFE ++      SPL      +K     E  + T 
Sbjct: 1106 NTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPLELPSFSDKT---DENSQETI 1165

Query: 241  EAVQKIRARMRTAQSRQKSYADVRRKSL-EFEVGDPVFLKVAPMKGVLRYGHK-GKLSPK 300
            +  Q ++  + T   + K Y D++ + + EF+ GD V +K    +    + HK  KL+P 
Sbjct: 1166 QVFQTVKEHLNTNNIKMKKYFDMKIQEIEEFQPGDLVMVK----RTKTGFLHKSNKLAPS 1225

Query: 301  FIGPFEILERVGPVAYKLALPPALSGV-HDVFHVSMLRKY 337
            F GPF +L++ GP  Y+L LP ++  +    FHVS L KY
Sbjct: 1226 FAGPFYVLQKSGPNNYELDLPDSIKHMFSSTFHVSHLEKY 1257

[Close]

BLAST of CmoCh10G011030 vs. Swiss-Prot
Match: TF27_SCHPO (Transposon Tf2-7 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-7 PE=3 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 3.4e-47
Identity = 111/340 (32.65%), Postives = 177/340 (52.06%), Query Frame = 1


Query: 1    MHPGGTKMYQDLKQHFWWKSMKRDVAGFVSKCLVCQQVKAPRQKTAGLLQPLSIPEWKWE 60
            +HPG   +   + + F WK +++ +  +V  C  CQ  K+   K  G LQP+   E  WE
Sbjct: 926  IHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPWE 985

Query: 61   NIAMDFIVGLPKTPKGYIVIWVVVDRLTKSAHFLPGKVTYTVDNWAQLYVKEIVRLHGVP 120
            +++MDFI  LP++  GY  ++VVVDR +K A  +P   + T +  A+++ + ++   G P
Sbjct: 986  SLSMDFITALPES-SGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNP 1045

Query: 121  VSIVSDRDPRFTSAFWRGLQKALGTRLDFSTAFHPQTDGQTEHLNQILEDMLRACVLDFK 180
              I++D D  FTS  W+         + FS  + PQTDGQTE  NQ +E +LR       
Sbjct: 1046 KEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHP 1105

Query: 181  ESWDSKLHLMEFSYNNSFQATIGMAPFEALYG-KRCRSPLCWDEVGEKELVGPELVRLTN 240
             +W   + L++ SYNN+  +   M PFE ++      SPL      +K     E  + T 
Sbjct: 1106 NTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPLELPSFSDKT---DENSQETI 1165

Query: 241  EAVQKIRARMRTAQSRQKSYADVRRKSL-EFEVGDPVFLKVAPMKGVLRYGHK-GKLSPK 300
            +  Q ++  + T   + K Y D++ + + EF+ GD V +K    +    + HK  KL+P 
Sbjct: 1166 QVFQTVKEHLNTNNIKMKKYFDMKIQEIEEFQPGDLVMVK----RTKTGFLHKSNKLAPS 1225

Query: 301  FIGPFEILERVGPVAYKLALPPALSGV-HDVFHVSMLRKY 337
            F GPF +L++ GP  Y+L LP ++  +    FHVS L KY
Sbjct: 1226 FAGPFYVLQKSGPNNYELDLPDSIKHMFSSTFHVSHLEKY 1257

[Close]

BLAST of CmoCh10G011030 vs. Swiss-Prot
Match: TF26_SCHPO (Transposon Tf2-6 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-6 PE=3 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 3.4e-47
Identity = 111/340 (32.65%), Postives = 177/340 (52.06%), Query Frame = 1


Query: 1    MHPGGTKMYQDLKQHFWWKSMKRDVAGFVSKCLVCQQVKAPRQKTAGLLQPLSIPEWKWE 60
            +HPG   +   + + F WK +++ +  +V  C  CQ  K+   K  G LQP+   E  WE
Sbjct: 926  IHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPWE 985

Query: 61   NIAMDFIVGLPKTPKGYIVIWVVVDRLTKSAHFLPGKVTYTVDNWAQLYVKEIVRLHGVP 120
            +++MDFI  LP++  GY  ++VVVDR +K A  +P   + T +  A+++ + ++   G P
Sbjct: 986  SLSMDFITALPES-SGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNP 1045

Query: 121  VSIVSDRDPRFTSAFWRGLQKALGTRLDFSTAFHPQTDGQTEHLNQILEDMLRACVLDFK 180
              I++D D  FTS  W+         + FS  + PQTDGQTE  NQ +E +LR       
Sbjct: 1046 KEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHP 1105

Query: 181  ESWDSKLHLMEFSYNNSFQATIGMAPFEALYG-KRCRSPLCWDEVGEKELVGPELVRLTN 240
             +W   + L++ SYNN+  +   M PFE ++      SPL      +K     E  + T 
Sbjct: 1106 NTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPLELPSFSDKT---DENSQETI 1165

Query: 241  EAVQKIRARMRTAQSRQKSYADVRRKSL-EFEVGDPVFLKVAPMKGVLRYGHK-GKLSPK 300
            +  Q ++  + T   + K Y D++ + + EF+ GD V +K    +    + HK  KL+P 
Sbjct: 1166 QVFQTVKEHLNTNNIKMKKYFDMKIQEIEEFQPGDLVMVK----RTKTGFLHKSNKLAPS 1225

Query: 301  FIGPFEILERVGPVAYKLALPPALSGV-HDVFHVSMLRKY 337
            F GPF +L++ GP  Y+L LP ++  +    FHVS L KY
Sbjct: 1226 FAGPFYVLQKSGPNNYELDLPDSIKHMFSSTFHVSHLEKY 1257

[Close]

BLAST of CmoCh10G011030 vs. TrEMBL
Match: Q84KB0_CUCME (Pol protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 611.7 bits (1576), Expect = 8.9e-172
Identity = 298/406 (73.40%), Postives = 344/406 (84.73%), Query Frame = 1


Query: 1   MHPGGTKMYQDLKQHF-WWKSMKRDVAGFVSKCLVCQQVKAPRQKTAGLLQPLSIPEWKW 60
           MHPG T+     +  F   ++MKR+VA FVSKCLVCQQVKAPRQK AGLLQPLSIPEWKW
Sbjct: 513 MHPGSTEDVSGPEAGFIGGRNMKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSIPEWKW 572

Query: 61  ENIAMDFIVGLPKTPKGYIVIWVVVDRLTKSAHFLPGKVTYTVDNWAQLYVKEIVRLHGV 120
           EN++MDFI GLP+T +G+ VIWVVVDRLTKSAHF+PGK TYT   WAQLY+ EIVRLHGV
Sbjct: 573 ENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGV 632

Query: 121 PVSIVSDRDPRFTSAFWRGLQKALGTRLDFSTAFHPQTDGQTEHLNQILEDMLRACVLDF 180
           PVSIVSDRD RFTS FW+GLQ A+GTRLDFSTAFHPQTDGQTE LNQ+LEDMLRAC L+F
Sbjct: 633 PVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEF 692

Query: 181 KESWDSKLHLMEFSYNNSFQATIGMAPFEALYGKRCRSPLCWDEVGEKELVGPELVRLTN 240
             SWDS LHLMEF+YNNS+QATIGMAPFEALYG+ CRSP+CW EVGE+ L+GPELV+ TN
Sbjct: 693 PGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGRCCRSPVCWGEVGEQRLMGPELVQSTN 752

Query: 241 EAVQKIRARMRTAQSRQKSYADVRRKSLEFEVGDPVFLKVAPMKGVLRYGHKGKLSPKFI 300
           EA+QKIR+RM TAQSRQKSYADVRRK LEFEVGD VFLKVAPMKGVLR+  +GKLSP+F+
Sbjct: 753 EAIQKIRSRMHTAQSRQKSYADVRRKDLEFEVGDKVFLKVAPMKGVLRFERRGKLSPRFV 812

Query: 301 GPFEILERVGPVAYKLALPPALSGVHDVFHVSMLRKYITDPIHVIDYEPLKLNEDLSYEE 360
           GPFEILER+GPVAY+LALPP+LS VHDVFHVSMLRKY+ DP HV+DYEPL+++E+LSY E
Sbjct: 813 GPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYVE 872

Query: 361 KSVRILAREVKTLRNRSIAFIKELLGRKTPKKERRTTNKEEKGRKR 406
           + V +LAR VKTLRN+ I  +K L   +  + E  T  +E+  R R
Sbjct: 873 QPVEVLARGVKTLRNKQIPLVKVLW--RNHRVEEATWEREDDMRSR 916

[Close]

BLAST of CmoCh10G011030 vs. TrEMBL
Match: A0A061FXC6_THECC (DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_013764 PE=4 SV=1)

HSP 1 Score: 543.9 bits (1400), Expect = 2.3e-151
Identity = 266/405 (65.68%), Postives = 321/405 (79.26%), Query Frame = 1


Query: 1   MHPGGTKMYQDLKQHFWWKSMKRDVAGFVSKCLVCQQVKAPRQKTAGLLQPLSIPEWKWE 60
           +HPG TKMYQDLK+ +WW+ +KRDVA FVSKCLVCQQVKA  QK AGLLQPL +PEWKWE
Sbjct: 39  VHPGATKMYQDLKEVYWWEGLKRDVAEFVSKCLVCQQVKAEHQKPAGLLQPLPVPEWKWE 98

Query: 61  NIAMDFIVGLPKTPKGYIVIWVVVDRLTKSAHFLPGKVTYTVDNWAQLYVKEIVRLHGVP 120
           +IAMDF+ GLP+T  GY  IW+VVDRLTKSAHFLP K TY    +A++YV EIVRLHG+P
Sbjct: 99  HIAMDFVTGLPRTSGGYDSIWIVVDRLTKSAHFLPVKTTYGAAQYARVYVDEIVRLHGIP 158

Query: 121 VSIVSDRDPRFTSAFWRGLQKALGTRLDFSTAFHPQTDGQTEHLNQILEDMLRACVLDFK 180
           +SIVSDR  +FTS FW  LQ+ALGT+LDFSTAFHPQTDGQ+E   Q LEDMLRACV+D  
Sbjct: 159 ISIVSDRGAQFTSRFWGKLQEALGTKLDFSTAFHPQTDGQSERTIQTLEDMLRACVIDLG 218

Query: 181 ESWDSKLHLMEFSYNNSFQATIGMAPFEALYGKRCRSPLCWDEVGEKELVGPELVRLTNE 240
             W+  L L+EF+YNNSFQ +I MAPFEALYG+RCRSP+ W EVGE++L+GPELV+   E
Sbjct: 219 VRWEQYLPLVEFAYNNSFQTSIQMAPFEALYGRRCRSPIGWLEVGERKLLGPELVQDATE 278

Query: 241 AVQKIRARMRTAQSRQKSYADVRRKSLEFEVGDPVFLKVAPMKGVLRYGHKGKLSPKFIG 300
            +  IR RM TAQSRQKSYAD RR+ LEF+VGD VFLKV+P KG++R+G KGKLSP++IG
Sbjct: 279 KIHMIRQRMLTAQSRQKSYADNRRRYLEFQVGDHVFLKVSPTKGIMRFGKKGKLSPRYIG 338

Query: 301 PFEILERVGPVAYKLALPPALSGVHDVFHVSMLRKYITDPIHVIDYEPLKLNEDLSYEEK 360
           PFEILE+VG VAY+LALPP LS +H VFHVSMLRKY  DP HVI YE ++L +DL+YEE+
Sbjct: 339 PFEILEKVGAVAYRLALPPDLSNIHPVFHVSMLRKYNPDPSHVIRYETIQLQDDLTYEEQ 398

Query: 361 SVRILAREVKTLRNRSIAFIKELLGRKTPKKERRTTNKEEKGRKR 406
            V IL R+VK LR++ +A +K L    T   E  T   E++ R +
Sbjct: 399 PVAILDRQVKKLRSKDVASVKVLWRNHT--SEEVTWEAEDEMRTK 441

[Close]

BLAST of CmoCh10G011030 vs. TrEMBL
Match: A0A061EWB7_THECC (Retrotransposon protein, Ty3-gypsy subclass, putative OS=Theobroma cacao GN=TCM_023662 PE=4 SV=1)

HSP 1 Score: 542.0 bits (1395), Expect = 8.6e-151
Identity = 265/405 (65.43%), Postives = 320/405 (79.01%), Query Frame = 1


Query: 1   MHPGGTKMYQDLKQHFWWKSMKRDVAGFVSKCLVCQQVKAPRQKTAGLLQPLSIPEWKWE 60
           +HPG TKMYQDLK+ +WW+ +KRDVA FVSKCLVCQQVKA  QK AGLLQPL +PEWKWE
Sbjct: 112 VHPGATKMYQDLKEVYWWEGLKRDVAEFVSKCLVCQQVKAEHQKPAGLLQPLPVPEWKWE 171

Query: 61  NIAMDFIVGLPKTPKGYIVIWVVVDRLTKSAHFLPGKVTYTVDNWAQLYVKEIVRLHGVP 120
           +IAMDF+ GLP+T  GY  IW+VVDRLTKSAHFLP K TY    +A++YV EIVRLHG+P
Sbjct: 172 HIAMDFVTGLPRTSGGYDSIWIVVDRLTKSAHFLPVKTTYGAAQYARVYVDEIVRLHGIP 231

Query: 121 VSIVSDRDPRFTSAFWRGLQKALGTRLDFSTAFHPQTDGQTEHLNQILEDMLRACVLDFK 180
           +SIVSDR  +FTS FW  LQ+ALGT+LDFSTAFHPQTDGQ+E   Q LEDMLRACV+D  
Sbjct: 232 ISIVSDRGAQFTSRFWGKLQEALGTKLDFSTAFHPQTDGQSERTIQTLEDMLRACVIDLG 291

Query: 181 ESWDSKLHLMEFSYNNSFQATIGMAPFEALYGKRCRSPLCWDEVGEKELVGPELVRLTNE 240
             W+  L L+EF+YNNSFQ +I MAPFEALYG+RCRSP+ W EVGE++L+GPELV+   E
Sbjct: 292 VRWEQYLPLVEFAYNNSFQTSIQMAPFEALYGRRCRSPIGWLEVGERKLLGPELVQDATE 351

Query: 241 AVQKIRARMRTAQSRQKSYADVRRKSLEFEVGDPVFLKVAPMKGVLRYGHKGKLSPKFIG 300
            +  IR RM TAQSR KSYAD RR+ LEF+VGD VFLKV+P KGV+R+G KGKLSP++IG
Sbjct: 352 KIHMIRQRMLTAQSRHKSYADNRRRDLEFQVGDHVFLKVSPTKGVMRFGKKGKLSPRYIG 411

Query: 301 PFEILERVGPVAYKLALPPALSGVHDVFHVSMLRKYITDPIHVIDYEPLKLNEDLSYEEK 360
           PFEIL++VG VAY+LALPP LS +H VFHVSMLRKY  DP HVI YE ++L +DL+YEE+
Sbjct: 412 PFEILDKVGTVAYRLALPPDLSNIHPVFHVSMLRKYNPDPSHVIRYETIQLQDDLTYEEQ 471

Query: 361 SVRILAREVKTLRNRSIAFIKELLGRKTPKKERRTTNKEEKGRKR 406
            V IL R+VK LR++ +A +K L    T   E  T   E++ R +
Sbjct: 472 PVAILDRQVKKLRSKDVASVKVLWRNHT--SEEVTWEAEDEMRTK 514

[Close]

BLAST of CmoCh10G011030 vs. TrEMBL
Match: A0A061EEG7_THECC (DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_018243 PE=4 SV=1)

HSP 1 Score: 542.0 bits (1395), Expect = 8.6e-151
Identity = 266/405 (65.68%), Postives = 320/405 (79.01%), Query Frame = 1


Query: 1    MHPGGTKMYQDLKQHFWWKSMKRDVAGFVSKCLVCQQVKAPRQKTAGLLQPLSIPEWKWE 60
            +HPG TKMYQDLK+ +WW+ +KRDVA FVSKCLVCQQVKA  QK AGLLQPL +PEWKWE
Sbjct: 1038 VHPGATKMYQDLKEVYWWEGLKRDVAEFVSKCLVCQQVKAEHQKPAGLLQPLPVPEWKWE 1097

Query: 61   NIAMDFIVGLPKTPKGYIVIWVVVDRLTKSAHFLPGKVTYTVDNWAQLYVKEIVRLHGVP 120
            +IAMDF+ GLP+T  GY  IW+VVDRLTKSAHFLP K TY    +A++YV EIVRLHG+P
Sbjct: 1098 HIAMDFVTGLPRTSGGYDSIWIVVDRLTKSAHFLPVKTTYGAAQYARVYVDEIVRLHGIP 1157

Query: 121  VSIVSDRDPRFTSAFWRGLQKALGTRLDFSTAFHPQTDGQTEHLNQILEDMLRACVLDFK 180
            +SIVSDR  +FTS FW  LQ+ALGT+LDFSTAFHPQTDGQ+E   Q LE MLRACV+D  
Sbjct: 1158 ISIVSDRGAQFTSRFWGKLQEALGTKLDFSTAFHPQTDGQSERTIQTLEAMLRACVIDLG 1217

Query: 181  ESWDSKLHLMEFSYNNSFQATIGMAPFEALYGKRCRSPLCWDEVGEKELVGPELVRLTNE 240
              W+  L L+EF+YNNSFQ +I MAPFEALYG+RCRSP+ W EVGE++L+GPELV+   E
Sbjct: 1218 VRWEQYLPLVEFAYNNSFQTSIQMAPFEALYGRRCRSPIGWLEVGERKLLGPELVQDATE 1277

Query: 241  AVQKIRARMRTAQSRQKSYADVRRKSLEFEVGDPVFLKVAPMKGVLRYGHKGKLSPKFIG 300
             +  IR RM TAQSRQKSYAD RR+ LEF+VGD VFLKV+P KGV+R+G KGKLSP++IG
Sbjct: 1278 KIHMIRQRMLTAQSRQKSYADNRRRDLEFQVGDHVFLKVSPTKGVMRFGKKGKLSPRYIG 1337

Query: 301  PFEILERVGPVAYKLALPPALSGVHDVFHVSMLRKYITDPIHVIDYEPLKLNEDLSYEEK 360
            PFEILE+VG VAY+LALPP LS +H VFHVSMLRKY  DP HVI YE ++L +DL+YEE+
Sbjct: 1338 PFEILEKVGAVAYRLALPPDLSNIHPVFHVSMLRKYNPDPSHVIRYETIQLQDDLTYEEQ 1397

Query: 361  SVRILAREVKTLRNRSIAFIKELLGRKTPKKERRTTNKEEKGRKR 406
             V IL R+VK LR++ +A +K L    T   E  T   E++ R +
Sbjct: 1398 PVAILDRQVKKLRSKDVASVKVLWRNHT--SEEVTWEAEDEMRTK 1440

[Close]

BLAST of CmoCh10G011030 vs. TrEMBL
Match: A0A061GA43_THECC (DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_028107 PE=4 SV=1)

HSP 1 Score: 541.6 bits (1394), Expect = 1.1e-150
Identity = 265/405 (65.43%), Postives = 321/405 (79.26%), Query Frame = 1


Query: 1   MHPGGTKMYQDLKQHFWWKSMKRDVAGFVSKCLVCQQVKAPRQKTAGLLQPLSIPEWKWE 60
           +HPG TKMYQDLK+ +WW+ +KRDVA FVSKCLVCQQVKA  QK AGLLQPL +PEWKWE
Sbjct: 270 VHPGATKMYQDLKEVYWWEGLKRDVAEFVSKCLVCQQVKAEHQKPAGLLQPLPVPEWKWE 329

Query: 61  NIAMDFIVGLPKTPKGYIVIWVVVDRLTKSAHFLPGKVTYTVDNWAQLYVKEIVRLHGVP 120
           +IAMDF+ GLP+T  GY  IW+VVD+LTKSAHFLP K TY   ++A++YV EIVRLHG+P
Sbjct: 330 HIAMDFVTGLPRTSGGYDSIWIVVDQLTKSAHFLPVKTTYGAAHYARVYVDEIVRLHGIP 389

Query: 121 VSIVSDRDPRFTSAFWRGLQKALGTRLDFSTAFHPQTDGQTEHLNQILEDMLRACVLDFK 180
           +SIVSDR  +FTS FW  LQ+ALGT+LDFSTAFHPQTDGQ+E   Q LEDMLRACV+D  
Sbjct: 390 ISIVSDRGAQFTSRFWGKLQEALGTKLDFSTAFHPQTDGQSERTIQTLEDMLRACVIDLG 449

Query: 181 ESWDSKLHLMEFSYNNSFQATIGMAPFEALYGKRCRSPLCWDEVGEKELVGPELVRLTNE 240
             W+  L L+EF+YNNSFQ +I MAPFEALYG+RCRSP+ W EVGE++L+GPELV+   E
Sbjct: 450 VRWEQYLPLVEFAYNNSFQTSIQMAPFEALYGRRCRSPIGWLEVGERKLLGPELVQDATE 509

Query: 241 AVQKIRARMRTAQSRQKSYADVRRKSLEFEVGDPVFLKVAPMKGVLRYGHKGKLSPKFIG 300
            +  IR RM TAQSRQKSYAD RR+ LEF+VGD VFLK +P KGV+R+G KGKLSP++IG
Sbjct: 510 KIHMIRQRMLTAQSRQKSYADNRRRDLEFQVGDHVFLKFSPTKGVMRFGKKGKLSPRYIG 569

Query: 301 PFEILERVGPVAYKLALPPALSGVHDVFHVSMLRKYITDPIHVIDYEPLKLNEDLSYEEK 360
           PF+ILE+VG VAY+LALPP LS +H VFHVSMLRKY  DP HVI YE ++L +DLSYEE+
Sbjct: 570 PFKILEKVGAVAYRLALPPDLSNIHPVFHVSMLRKYNLDPSHVIRYETIQLQDDLSYEEQ 629

Query: 361 SVRILAREVKTLRNRSIAFIKELLGRKTPKKERRTTNKEEKGRKR 406
            V IL R+VK LR++ +A +K L    T   E  T   E++ R +
Sbjct: 630 PVAILDRQVKKLRSKDVASVKVLWRNHT--SEEVTWEAEDEMRTK 672

[Close]

BLAST of CmoCh10G011030 vs. NCBI nr
Match: gi|28558781|gb|AAO45752.1| (pol protein [Cucumis melo subsp. melo])

HSP 1 Score: 611.7 bits (1576), Expect = 1.3e-171
Identity = 298/406 (73.40%), Postives = 344/406 (84.73%), Query Frame = 1


Query: 1   MHPGGTKMYQDLKQHF-WWKSMKRDVAGFVSKCLVCQQVKAPRQKTAGLLQPLSIPEWKW 60
           MHPG T+     +  F   ++MKR+VA FVSKCLVCQQVKAPRQK AGLLQPLSIPEWKW
Sbjct: 513 MHPGSTEDVSGPEAGFIGGRNMKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSIPEWKW 572

Query: 61  ENIAMDFIVGLPKTPKGYIVIWVVVDRLTKSAHFLPGKVTYTVDNWAQLYVKEIVRLHGV 120
           EN++MDFI GLP+T +G+ VIWVVVDRLTKSAHF+PGK TYT   WAQLY+ EIVRLHGV
Sbjct: 573 ENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGV 632

Query: 121 PVSIVSDRDPRFTSAFWRGLQKALGTRLDFSTAFHPQTDGQTEHLNQILEDMLRACVLDF 180
           PVSIVSDRD RFTS FW+GLQ A+GTRLDFSTAFHPQTDGQTE LNQ+LEDMLRAC L+F
Sbjct: 633 PVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEF 692

Query: 181 KESWDSKLHLMEFSYNNSFQATIGMAPFEALYGKRCRSPLCWDEVGEKELVGPELVRLTN 240
             SWDS LHLMEF+YNNS+QATIGMAPFEALYG+ CRSP+CW EVGE+ L+GPELV+ TN
Sbjct: 693 PGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGRCCRSPVCWGEVGEQRLMGPELVQSTN 752

Query: 241 EAVQKIRARMRTAQSRQKSYADVRRKSLEFEVGDPVFLKVAPMKGVLRYGHKGKLSPKFI 300
           EA+QKIR+RM TAQSRQKSYADVRRK LEFEVGD VFLKVAPMKGVLR+  +GKLSP+F+
Sbjct: 753 EAIQKIRSRMHTAQSRQKSYADVRRKDLEFEVGDKVFLKVAPMKGVLRFERRGKLSPRFV 812

Query: 301 GPFEILERVGPVAYKLALPPALSGVHDVFHVSMLRKYITDPIHVIDYEPLKLNEDLSYEE 360
           GPFEILER+GPVAY+LALPP+LS VHDVFHVSMLRKY+ DP HV+DYEPL+++E+LSY E
Sbjct: 813 GPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYVE 872

Query: 361 KSVRILAREVKTLRNRSIAFIKELLGRKTPKKERRTTNKEEKGRKR 406
           + V +LAR VKTLRN+ I  +K L   +  + E  T  +E+  R R
Sbjct: 873 QPVEVLARGVKTLRNKQIPLVKVLW--RNHRVEEATWEREDDMRSR 916

[Close]

BLAST of CmoCh10G011030 vs. NCBI nr
Match: gi|590667202|ref|XP_007037177.1| (DNA/RNA polymerases superfamily protein [Theobroma cacao])

HSP 1 Score: 543.9 bits (1400), Expect = 3.3e-151
Identity = 266/405 (65.68%), Postives = 321/405 (79.26%), Query Frame = 1


Query: 1   MHPGGTKMYQDLKQHFWWKSMKRDVAGFVSKCLVCQQVKAPRQKTAGLLQPLSIPEWKWE 60
           +HPG TKMYQDLK+ +WW+ +KRDVA FVSKCLVCQQVKA  QK AGLLQPL +PEWKWE
Sbjct: 39  VHPGATKMYQDLKEVYWWEGLKRDVAEFVSKCLVCQQVKAEHQKPAGLLQPLPVPEWKWE 98

Query: 61  NIAMDFIVGLPKTPKGYIVIWVVVDRLTKSAHFLPGKVTYTVDNWAQLYVKEIVRLHGVP 120
           +IAMDF+ GLP+T  GY  IW+VVDRLTKSAHFLP K TY    +A++YV EIVRLHG+P
Sbjct: 99  HIAMDFVTGLPRTSGGYDSIWIVVDRLTKSAHFLPVKTTYGAAQYARVYVDEIVRLHGIP 158

Query: 121 VSIVSDRDPRFTSAFWRGLQKALGTRLDFSTAFHPQTDGQTEHLNQILEDMLRACVLDFK 180
           +SIVSDR  +FTS FW  LQ+ALGT+LDFSTAFHPQTDGQ+E   Q LEDMLRACV+D  
Sbjct: 159 ISIVSDRGAQFTSRFWGKLQEALGTKLDFSTAFHPQTDGQSERTIQTLEDMLRACVIDLG 218

Query: 181 ESWDSKLHLMEFSYNNSFQATIGMAPFEALYGKRCRSPLCWDEVGEKELVGPELVRLTNE 240
             W+  L L+EF+YNNSFQ +I MAPFEALYG+RCRSP+ W EVGE++L+GPELV+   E
Sbjct: 219 VRWEQYLPLVEFAYNNSFQTSIQMAPFEALYGRRCRSPIGWLEVGERKLLGPELVQDATE 278

Query: 241 AVQKIRARMRTAQSRQKSYADVRRKSLEFEVGDPVFLKVAPMKGVLRYGHKGKLSPKFIG 300
            +  IR RM TAQSRQKSYAD RR+ LEF+VGD VFLKV+P KG++R+G KGKLSP++IG
Sbjct: 279 KIHMIRQRMLTAQSRQKSYADNRRRYLEFQVGDHVFLKVSPTKGIMRFGKKGKLSPRYIG 338

Query: 301 PFEILERVGPVAYKLALPPALSGVHDVFHVSMLRKYITDPIHVIDYEPLKLNEDLSYEEK 360
           PFEILE+VG VAY+LALPP LS +H VFHVSMLRKY  DP HVI YE ++L +DL+YEE+
Sbjct: 339 PFEILEKVGAVAYRLALPPDLSNIHPVFHVSMLRKYNPDPSHVIRYETIQLQDDLTYEEQ 398

Query: 361 SVRILAREVKTLRNRSIAFIKELLGRKTPKKERRTTNKEEKGRKR 406
            V IL R+VK LR++ +A +K L    T   E  T   E++ R +
Sbjct: 399 PVAILDRQVKKLRSKDVASVKVLWRNHT--SEEVTWEAEDEMRTK 441

[Close]

BLAST of CmoCh10G011030 vs. NCBI nr
Match: gi|590633659|ref|XP_007028165.1| (Retrotransposon protein, Ty3-gypsy subclass, putative [Theobroma cacao])

HSP 1 Score: 542.0 bits (1395), Expect = 1.2e-150
Identity = 265/405 (65.43%), Postives = 320/405 (79.01%), Query Frame = 1


Query: 1   MHPGGTKMYQDLKQHFWWKSMKRDVAGFVSKCLVCQQVKAPRQKTAGLLQPLSIPEWKWE 60
           +HPG TKMYQDLK+ +WW+ +KRDVA FVSKCLVCQQVKA  QK AGLLQPL +PEWKWE
Sbjct: 112 VHPGATKMYQDLKEVYWWEGLKRDVAEFVSKCLVCQQVKAEHQKPAGLLQPLPVPEWKWE 171

Query: 61  NIAMDFIVGLPKTPKGYIVIWVVVDRLTKSAHFLPGKVTYTVDNWAQLYVKEIVRLHGVP 120
           +IAMDF+ GLP+T  GY  IW+VVDRLTKSAHFLP K TY    +A++YV EIVRLHG+P
Sbjct: 172 HIAMDFVTGLPRTSGGYDSIWIVVDRLTKSAHFLPVKTTYGAAQYARVYVDEIVRLHGIP 231

Query: 121 VSIVSDRDPRFTSAFWRGLQKALGTRLDFSTAFHPQTDGQTEHLNQILEDMLRACVLDFK 180
           +SIVSDR  +FTS FW  LQ+ALGT+LDFSTAFHPQTDGQ+E   Q LEDMLRACV+D  
Sbjct: 232 ISIVSDRGAQFTSRFWGKLQEALGTKLDFSTAFHPQTDGQSERTIQTLEDMLRACVIDLG 291

Query: 181 ESWDSKLHLMEFSYNNSFQATIGMAPFEALYGKRCRSPLCWDEVGEKELVGPELVRLTNE 240
             W+  L L+EF+YNNSFQ +I MAPFEALYG+RCRSP+ W EVGE++L+GPELV+   E
Sbjct: 292 VRWEQYLPLVEFAYNNSFQTSIQMAPFEALYGRRCRSPIGWLEVGERKLLGPELVQDATE 351

Query: 241 AVQKIRARMRTAQSRQKSYADVRRKSLEFEVGDPVFLKVAPMKGVLRYGHKGKLSPKFIG 300
            +  IR RM TAQSR KSYAD RR+ LEF+VGD VFLKV+P KGV+R+G KGKLSP++IG
Sbjct: 352 KIHMIRQRMLTAQSRHKSYADNRRRDLEFQVGDHVFLKVSPTKGVMRFGKKGKLSPRYIG 411

Query: 301 PFEILERVGPVAYKLALPPALSGVHDVFHVSMLRKYITDPIHVIDYEPLKLNEDLSYEEK 360
           PFEIL++VG VAY+LALPP LS +H VFHVSMLRKY  DP HVI YE ++L +DL+YEE+
Sbjct: 412 PFEILDKVGTVAYRLALPPDLSNIHPVFHVSMLRKYNPDPSHVIRYETIQLQDDLTYEEQ 471

Query: 361 SVRILAREVKTLRNRSIAFIKELLGRKTPKKERRTTNKEEKGRKR 406
            V IL R+VK LR++ +A +K L    T   E  T   E++ R +
Sbjct: 472 PVAILDRQVKKLRSKDVASVKVLWRNHT--SEEVTWEAEDEMRTK 514

[Close]

BLAST of CmoCh10G011030 vs. NCBI nr
Match: gi|590649404|ref|XP_007032400.1| (DNA/RNA polymerases superfamily protein [Theobroma cacao])

HSP 1 Score: 542.0 bits (1395), Expect = 1.2e-150
Identity = 266/405 (65.68%), Postives = 320/405 (79.01%), Query Frame = 1


Query: 1    MHPGGTKMYQDLKQHFWWKSMKRDVAGFVSKCLVCQQVKAPRQKTAGLLQPLSIPEWKWE 60
            +HPG TKMYQDLK+ +WW+ +KRDVA FVSKCLVCQQVKA  QK AGLLQPL +PEWKWE
Sbjct: 1038 VHPGATKMYQDLKEVYWWEGLKRDVAEFVSKCLVCQQVKAEHQKPAGLLQPLPVPEWKWE 1097

Query: 61   NIAMDFIVGLPKTPKGYIVIWVVVDRLTKSAHFLPGKVTYTVDNWAQLYVKEIVRLHGVP 120
            +IAMDF+ GLP+T  GY  IW+VVDRLTKSAHFLP K TY    +A++YV EIVRLHG+P
Sbjct: 1098 HIAMDFVTGLPRTSGGYDSIWIVVDRLTKSAHFLPVKTTYGAAQYARVYVDEIVRLHGIP 1157

Query: 121  VSIVSDRDPRFTSAFWRGLQKALGTRLDFSTAFHPQTDGQTEHLNQILEDMLRACVLDFK 180
            +SIVSDR  +FTS FW  LQ+ALGT+LDFSTAFHPQTDGQ+E   Q LE MLRACV+D  
Sbjct: 1158 ISIVSDRGAQFTSRFWGKLQEALGTKLDFSTAFHPQTDGQSERTIQTLEAMLRACVIDLG 1217

Query: 181  ESWDSKLHLMEFSYNNSFQATIGMAPFEALYGKRCRSPLCWDEVGEKELVGPELVRLTNE 240
              W+  L L+EF+YNNSFQ +I MAPFEALYG+RCRSP+ W EVGE++L+GPELV+   E
Sbjct: 1218 VRWEQYLPLVEFAYNNSFQTSIQMAPFEALYGRRCRSPIGWLEVGERKLLGPELVQDATE 1277

Query: 241  AVQKIRARMRTAQSRQKSYADVRRKSLEFEVGDPVFLKVAPMKGVLRYGHKGKLSPKFIG 300
             +  IR RM TAQSRQKSYAD RR+ LEF+VGD VFLKV+P KGV+R+G KGKLSP++IG
Sbjct: 1278 KIHMIRQRMLTAQSRQKSYADNRRRDLEFQVGDHVFLKVSPTKGVMRFGKKGKLSPRYIG 1337

Query: 301  PFEILERVGPVAYKLALPPALSGVHDVFHVSMLRKYITDPIHVIDYEPLKLNEDLSYEEK 360
            PFEILE+VG VAY+LALPP LS +H VFHVSMLRKY  DP HVI YE ++L +DL+YEE+
Sbjct: 1338 PFEILEKVGAVAYRLALPPDLSNIHPVFHVSMLRKYNPDPSHVIRYETIQLQDDLTYEEQ 1397

Query: 361  SVRILAREVKTLRNRSIAFIKELLGRKTPKKERRTTNKEEKGRKR 406
             V IL R+VK LR++ +A +K L    T   E  T   E++ R +
Sbjct: 1398 PVAILDRQVKKLRSKDVASVKVLWRNHT--SEEVTWEAEDEMRTK 1440

[Close]

BLAST of CmoCh10G011030 vs. NCBI nr
Match: gi|590617570|ref|XP_007023829.1| (DNA/RNA polymerases superfamily protein [Theobroma cacao])

HSP 1 Score: 541.6 bits (1394), Expect = 1.6e-150
Identity = 265/405 (65.43%), Postives = 321/405 (79.26%), Query Frame = 1


Query: 1   MHPGGTKMYQDLKQHFWWKSMKRDVAGFVSKCLVCQQVKAPRQKTAGLLQPLSIPEWKWE 60
           +HPG TKMYQDLK+ +WW+ +KRDVA FVSKCLVCQQVKA  QK AGLLQPL +PEWKWE
Sbjct: 270 VHPGATKMYQDLKEVYWWEGLKRDVAEFVSKCLVCQQVKAEHQKPAGLLQPLPVPEWKWE 329

Query: 61  NIAMDFIVGLPKTPKGYIVIWVVVDRLTKSAHFLPGKVTYTVDNWAQLYVKEIVRLHGVP 120
           +IAMDF+ GLP+T  GY  IW+VVD+LTKSAHFLP K TY   ++A++YV EIVRLHG+P
Sbjct: 330 HIAMDFVTGLPRTSGGYDSIWIVVDQLTKSAHFLPVKTTYGAAHYARVYVDEIVRLHGIP 389

Query: 121 VSIVSDRDPRFTSAFWRGLQKALGTRLDFSTAFHPQTDGQTEHLNQILEDMLRACVLDFK 180
           +SIVSDR  +FTS FW  LQ+ALGT+LDFSTAFHPQTDGQ+E   Q LEDMLRACV+D  
Sbjct: 390 ISIVSDRGAQFTSRFWGKLQEALGTKLDFSTAFHPQTDGQSERTIQTLEDMLRACVIDLG 449

Query: 181 ESWDSKLHLMEFSYNNSFQATIGMAPFEALYGKRCRSPLCWDEVGEKELVGPELVRLTNE 240
             W+  L L+EF+YNNSFQ +I MAPFEALYG+RCRSP+ W EVGE++L+GPELV+   E
Sbjct: 450 VRWEQYLPLVEFAYNNSFQTSIQMAPFEALYGRRCRSPIGWLEVGERKLLGPELVQDATE 509

Query: 241 AVQKIRARMRTAQSRQKSYADVRRKSLEFEVGDPVFLKVAPMKGVLRYGHKGKLSPKFIG 300
            +  IR RM TAQSRQKSYAD RR+ LEF+VGD VFLK +P KGV+R+G KGKLSP++IG
Sbjct: 510 KIHMIRQRMLTAQSRQKSYADNRRRDLEFQVGDHVFLKFSPTKGVMRFGKKGKLSPRYIG 569

Query: 301 PFEILERVGPVAYKLALPPALSGVHDVFHVSMLRKYITDPIHVIDYEPLKLNEDLSYEEK 360
           PF+ILE+VG VAY+LALPP LS +H VFHVSMLRKY  DP HVI YE ++L +DLSYEE+
Sbjct: 570 PFKILEKVGAVAYRLALPPDLSNIHPVFHVSMLRKYNLDPSHVIRYETIQLQDDLSYEEQ 629

Query: 361 SVRILAREVKTLRNRSIAFIKELLGRKTPKKERRTTNKEEKGRKR 406
            V IL R+VK LR++ +A +K L    T   E  T   E++ R +
Sbjct: 630 PVAILDRQVKKLRSKDVASVKVLWRNHT--SEEVTWEAEDEMRTK 672

The following BLAST results are available for this feature:

BLAST of CmoCh10G011030 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TF211_SCHPO	3.4e-47	32.65	Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
TF29_SCHPO	3.4e-47	32.65	Transposon Tf2-9 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
TF28_SCHPO	3.4e-47	32.65	Transposon Tf2-8 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
TF27_SCHPO	3.4e-47	32.65	Transposon Tf2-7 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
TF26_SCHPO	3.4e-47	32.65	Transposon Tf2-6 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]

BLAST of CmoCh10G011030 vs. TrEMBL


Match Name	E-value	Identity	Description
Q84KB0_CUCME	8.9e-172	73.40	Pol protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
A0A061FXC6_THECC	2.3e-151	65.68	DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_013764 PE=4 SV...	[more]
A0A061EWB7_THECC	8.6e-151	65.43	Retrotransposon protein, Ty3-gypsy subclass, putative OS=Theobroma cacao GN=TCM_...	[more]
A0A061EEG7_THECC	8.6e-151	65.68	DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_018243 PE=4 SV...	[more]
A0A061GA43_THECC	1.1e-150	65.43	DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_028107 PE=4 SV...	[more]

BLAST of CmoCh10G011030 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh10G011030 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|28558781\|gb\|AAO45752.1\|	1.3e-171	73.40	pol protein [Cucumis melo subsp. melo]	[more]
gi\|590667202\|ref\|XP_007037177.1\|	3.3e-151	65.68	DNA/RNA polymerases superfamily protein [Theobroma cacao]	[more]
gi\|590633659\|ref\|XP_007028165.1\|	1.2e-150	65.43	Retrotransposon protein, Ty3-gypsy subclass, putative [Theobroma cacao]	[more]
gi\|590649404\|ref\|XP_007032400.1\|	1.2e-150	65.68	DNA/RNA polymerases superfamily protein [Theobroma cacao]	[more]
gi\|590617570\|ref\|XP_007023829.1\|	1.6e-150	65.43	DNA/RNA polymerases superfamily protein [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001584	Integrase_cat-core
IPR012337	RNaseH-like_sf

Vocabulary: **Biological Process**
Term	Definition
GO:0015074	DNA integration

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh10G011030.1	CmoCh10G011030.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001584	Integrase, catalytic core	PFAM	PF00665	rve	coord: 62..171 score: 1.1
IPR001584	Integrase, catalytic core	PROFILE	PS50994	INTEGRASE	coord: 51..214 score: 19
IPR012337	Ribonuclease H-like domain	GENE3D	G3DSA:3.30.420.10		coord: 59..218 score: 1.3
IPR012337	Ribonuclease H-like domain	unknown	SSF53098	Ribonuclease H-like	coord: 52..210 score: 2.28
None	No IPR available	PANTHER	PTHR24559	FAMILY NOT NAMED	coord: 1..381 score: 2.1E
None	No IPR available	PANTHER	PTHR24559:SF207	SUBFAMILY NOT NAMED	coord: 1..381 score: 2.1E

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh10G011030	Cucumber (Gy14) v1	cgycmoB0804
CmoCh10G011030	Cucurbita maxima (Rimu)	cmacmoB067
CmoCh10G011030	Wild cucumber (PI 183967)	cmocpiB048
CmoCh10G011030	Cucumber (Chinese Long) v2	cmocuB045
CmoCh10G011030	Melon (DHL92) v3.5.1	cmomeB054
CmoCh10G011030	Melon (DHL92) v3.5.1	cmomeB066
CmoCh10G011030	Watermelon (Charleston Gray)	cmowcgB055
CmoCh10G011030	Watermelon (97103) v1	cmowmB047
CmoCh10G011030	Cucurbita pepo (Zucchini)	cmocpeB056
CmoCh10G011030	Bottle gourd (USVL1VR-Ls)	cmolsiB057
CmoCh10G011030	Cucumber (Gy14) v2	cgybcmoB012
CmoCh10G011030	Melon (DHL92) v3.6.1	cmomedB058
CmoCh10G011030	Melon (DHL92) v3.6.1	cmomedB069
CmoCh10G011030	Cucumber (Chinese Long) v3	cmocucB0051
CmoCh10G011030	Watermelon (97103) v2	cmowmbB056
CmoCh10G011030	Wax gourd	cmowgoB0087