CmoCh10G009600.1 (mRNA) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh10G009600.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Unknown protein
Location	Cmo_Chr10 : 4827571 .. 4828449 (-)
Sequence length	794

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGGTGTTTTGAACAAATCAACCCTCCAACACCCTATTTATTACGCAATCAATTTCCAATTCAATTTTTTCCGTTGAAATCTGGGGACAACCTCTCCACAGAAGTTAAGATGGGAAGGAGAAACAGAGGTACACGCCTCTCCGACTTGAATCAGTTCAGTGCTCGTTCAAGGCTTCTTCAATCTTCTCCATGTTTCGCTCCGTTTTTGTTCTTCTCCTTGCGTCTTTGATTTCTCTTGTTTTCCACCGATTCATAGGTAATTTCGTTTTCCGGTTCTAACTGGCTCAATTTCCTAGGGTTTTAATCGTATCGTGATGAATAAGCATCTTGTGGTGAAGCAGGTTTGAAGTCGGGAAATATGGTGATGGCGATTGAAGATGTGGATTCTATGGCTCTTTTACCGTTTGGATCTGCTTCTCGCATTGGCAGCTTCTTTCGACTTCCTCAATGTGGCGGCCCTCGCCGGACAGGTACTCTTTCTCATCACTTGTTTGTTTTTTCGTTCTTCTGAATGCATTTCTGTGGTTTACTAAATCGTTTATTTATTCAATTTTGAGCTTGTTGCTTCTGATTGGCATCCCACAACAATTGTTTTAGCTAGCATTCAATTGGATTCTGAAATTTGCCTGATATTTTGGGATTCATGTCGAATTTCTGTGTTTCAGTTTCTTAATCTTTTCTTTTTCTGTAACTAGGATAATGAGCTCCATTCTTTGTATTATGCTTATTGTTATGACCCACTCACCAATCTCGAGAGGCTTTCTTCAACTGTACACCCACTAAAATAAGATATTTAGTTGCTAAGATTCGATTCATAATCATTTGGGTTTTTTATTTTTAGTTTTTGAAGATTGTGTTTGTTCTATACATATTCATAGCC

mRNA sequence

TGGTGTTTTGAACAAATCAACCCTCCAACACCCTATTTATTACGCAATCAATTTCCAATTCAATTTTTTCCGTTGAAATCTGGGGACAACCTCTCCACAGAAGTTAAGATGGGAAGGAGAAACAGAGGTACACGCCTCTCCGACTTGAATCAGTTCAGTGCTCGTTCAAGGCTTCTTCAATCTTCTCCATGTTTCGCTCCGTTTTTGTTCTTCTCCTTGCGTCTTTGATTTCTCTTGTTTTCCACCGATTCATAGGTTTGAAGTCGGGAAATATGGTGATGGCGATTGAAGATGTGGATTCTATGGCTCTTTTACCGTTTGGATCTGCTTCTCGCATTGGCAGCTTCTTTCGACTTCCTCAATGTGGCGGCCCTCGCCGGACAGGTACTCTTTCTCATCACTTGTTTGTTTTTTCGTTCTTCTGAATGCATTTCTGTGGTTTACTAAATCGTTTATTTATTCAATTTTGAGCTTGTTGCTTCTGATTGGCATCCCACAACAATTGTTTTAGCTAGCATTCAATTGGATTCTGAAATTTGCCTGATATTTTGGGATTCATGTCGAATTTCTGTGTTTCAGTTTCTTAATCTTTTCTTTTTCTGTAACTAGGATAATGAGCTCCATTCTTTGTATTATGCTTATTGTTATGACCCACTCACCAATCTCGAGAGGCTTTCTTCAACTGTACACCCACTAAAATAAGATATTTAGTTGCTAAGATTCGATTCATAATCATTTGGGTTTTTTATTTTTAGTTTTTGAAGATTGTGTTTGTTCTATACATATTCATAGCC

Coding sequence (CDS)

ATGTTTCGCTCCGTTTTTGTTCTTCTCCTTGCGTCTTTGATTTCTCTTGTTTTCCACCGATTCATAGGTTTGAAGTCGGGAAATATGGTGATGGCGATTGAAGATGTGGATTCTATGGCTCTTTTACCGTTTGGATCTGCTTCTCGCATTGGCAGCTTCTTTCGACTTCCTCAATGTGGCGGCCCTCGCCGGACAGGTACTCTTTCTCATCACTTGTTTGTTTTTTCGTTCTTCTGA

Homology

[Close]

BLAST of CmoCh10G009600.1 vs. NCBI nr
Match: gi|449442551|ref|XP_004139045.1| (PREDICTED: glucan endo-1,3-beta-glucosidase-like [Cucumis sativus])

HSP 1 Score: 81.3 bits (199), Expect = 8.5e-13
Identity = 47/70 (67.14%), Postives = 52/70 (74.29%), Query Frame = 1


Query: 2  FRSVFVLLLASLISLVFHRFIGLKSGNMVMA--IEDVDSMALLPFG-SASRIGSFFRLPQ 61
          F  V VLLL  LIS  F+R +GLK GNM MA  IED DSMALLPFG SAS +G F RLPQ
Sbjct: 11 FSFVLVLLLGVLISPGFNRLVGLKLGNMAMAMTIEDEDSMALLPFGGSASSVGRFIRLPQ 70

Query: 62 CGGPRRTGTL 69
          CGGPRRT ++
Sbjct: 71 CGGPRRTESI 80

The following BLAST results are available for this feature:

BLAST of CmoCh10G009600.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh10G009600.1 vs. TrEMBL


Match Name	E-value	Identity	Description

BLAST of CmoCh10G009600.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh10G009600.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449442551\|ref\|XP_004139045.1\|	8.5e-13	67.14	PREDICTED: glucan endo-1,3-beta-glucosidase-like [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh10G009600	CmoCh10G009600	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh10G009600.1	CmoCh10G009600.1-protein	polypeptide

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh10G009600.1.three_prime_UTR.1	CmoCh10G009600.1.three_prime_UTR.1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh10G009600.1.CDS.2	CmoCh10G009600.1.CDS.2	CDS
CmoCh10G009600.1.CDS.1	CmoCh10G009600.1.CDS.1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh10G009600.1.five_prime_UTR.1	CmoCh10G009600.1.five_prime_UTR.1	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh10G009600.1.exon.2	CmoCh10G009600.1.exon.2	exon
CmoCh10G009600.1.exon.1	CmoCh10G009600.1.exon.1	exon