CmoCh10G009600 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh10G009600
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr10 : 4827571 .. 4828449 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGGTGTTTTGAACAAATCAACCCTCCAACACCCTATTTATTACGCAATCAATTTCCAATTCAATTTTTTCCGTTGAAATCTGGGGACAACCTCTCCACAGAAGTTAAGATGGGAAGGAGAAACAGAGGTACACGCCTCTCCGACTTGAATCAGTTCAGTGCTCGTTCAAGGCTTCTTCAATCTTCTCCATGTTTCGCTCCGTTTTTGTTCTTCTCCTTGCGTCTTTGATTTCTCTTGTTTTCCACCGATTCATAGGTAATTTCGTTTTCCGGTTCTAACTGGCTCAATTTCCTAGGGTTTTAATCGTATCGTGATGAATAAGCATCTTGTGGTGAAGCAGGTTTGAAGTCGGGAAATATGGTGATGGCGATTGAAGATGTGGATTCTATGGCTCTTTTACCGTTTGGATCTGCTTCTCGCATTGGCAGCTTCTTTCGACTTCCTCAATGTGGCGGCCCTCGCCGGACAGGTACTCTTTCTCATCACTTGTTTGTTTTTTCGTTCTTCTGAATGCATTTCTGTGGTTTACTAAATCGTTTATTTATTCAATTTTGAGCTTGTTGCTTCTGATTGGCATCCCACAACAATTGTTTTAGCTAGCATTCAATTGGATTCTGAAATTTGCCTGATATTTTGGGATTCATGTCGAATTTCTGTGTTTCAGTTTCTTAATCTTTTCTTTTTCTGTAACTAGGATAATGAGCTCCATTCTTTGTATTATGCTTATTGTTATGACCCACTCACCAATCTCGAGAGGCTTTCTTCAACTGTACACCCACTAAAATAAGATATTTAGTTGCTAAGATTCGATTCATAATCATTTGGGTTTTTTATTTTTAGTTTTTGAAGATTGTGTTTGTTCTATACATATTCATAGCC

mRNA sequence

TGGTGTTTTGAACAAATCAACCCTCCAACACCCTATTTATTACGCAATCAATTTCCAATTCAATTTTTTCCGTTGAAATCTGGGGACAACCTCTCCACAGAAGTTAAGATGGGAAGGAGAAACAGAGGTACACGCCTCTCCGACTTGAATCAGTTCAGTGCTCGTTCAAGGCTTCTTCAATCTTCTCCATGTTTCGCTCCGTTTTTGTTCTTCTCCTTGCGTCTTTGATTTCTCTTGTTTTCCACCGATTCATAGGTTTGAAGTCGGGAAATATGGTGATGGCGATTGAAGATGTGGATTCTATGGCTCTTTTACCGTTTGGATCTGCTTCTCGCATTGGCAGCTTCTTTCGACTTCCTCAATGTGGCGGCCCTCGCCGGACAGGTACTCTTTCTCATCACTTGTTTGTTTTTTCGTTCTTCTGAATGCATTTCTGTGGTTTACTAAATCGTTTATTTATTCAATTTTGAGCTTGTTGCTTCTGATTGGCATCCCACAACAATTGTTTTAGCTAGCATTCAATTGGATTCTGAAATTTGCCTGATATTTTGGGATTCATGTCGAATTTCTGTGTTTCAGTTTCTTAATCTTTTCTTTTTCTGTAACTAGGATAATGAGCTCCATTCTTTGTATTATGCTTATTGTTATGACCCACTCACCAATCTCGAGAGGCTTTCTTCAACTGTACACCCACTAAAATAAGATATTTAGTTGCTAAGATTCGATTCATAATCATTTGGGTTTTTTATTTTTAGTTTTTGAAGATTGTGTTTGTTCTATACATATTCATAGCC

Coding sequence (CDS)

ATGTTTCGCTCCGTTTTTGTTCTTCTCCTTGCGTCTTTGATTTCTCTTGTTTTCCACCGATTCATAGGTTTGAAGTCGGGAAATATGGTGATGGCGATTGAAGATGTGGATTCTATGGCTCTTTTACCGTTTGGATCTGCTTCTCGCATTGGCAGCTTCTTTCGACTTCCTCAATGTGGCGGCCCTCGCCGGACAGGTACTCTTTCTCATCACTTGTTTGTTTTTTCGTTCTTCTGA
Homology
[Close]
BLAST of CmoCh10G009600 vs. NCBI nr
Match: gi|449442551|ref|XP_004139045.1| (PREDICTED: glucan endo-1,3-beta-glucosidase-like [Cucumis sativus])

HSP 1 Score: 81.3 bits (199), Expect = 8.5e-13
Identity = 47/70 (67.14%), Postives = 52/70 (74.29%), Query Frame = 1 

Query: 2  FRSVFVLLLASLISLVFHRFIGLKSGNMVMA--IEDVDSMALLPFG-SASRIGSFFRLPQ 61
          F  V VLLL  LIS  F+R +GLK GNM MA  IED DSMALLPFG SAS +G F RLPQ
Sbjct: 11 FSFVLVLLLGVLISPGFNRLVGLKLGNMAMAMTIEDEDSMALLPFGGSASSVGRFIRLPQ 70

Query: 62 CGGPRRTGTL 69
          CGGPRRT ++
Sbjct: 71 CGGPRRTESI 80

The following BLAST results are available for this feature:
BLAST of CmoCh10G009600 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh10G009600 vs. TrEMBL
Match NameE-valueIdentityDescription
BLAST of CmoCh10G009600 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh10G009600 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449442551|ref|XP_004139045.1|8.5e-1367.14PREDICTED: glucan endo-1,3-beta-glucosidase-like [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh10G009600.1CmoCh10G009600.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh10G009600Melon (DHL92) v3.6.1cmomedB076
CmoCh10G009600Melon (DHL92) v3.6.1cmomedB061
CmoCh10G009600Silver-seed gourdcarcmoB0574
CmoCh10G009600Silver-seed gourdcarcmoB0631
CmoCh10G009600Silver-seed gourdcarcmoB0703
CmoCh10G009600Cucumber (Chinese Long) v3cmocucB0053
CmoCh10G009600Watermelon (97103) v2cmowmbB045
CmoCh10G009600Watermelon (97103) v2cmowmbB046
CmoCh10G009600Wax gourdcmowgoB0055
CmoCh10G009600Wax gourdcmowgoB0072
CmoCh10G009600Cucurbita moschata (Rifu)cmocmoB044
CmoCh10G009600Cucurbita moschata (Rifu)cmocmoB071
CmoCh10G009600Cucurbita moschata (Rifu)cmocmoB072
CmoCh10G009600Cucumber (Gy14) v1cgycmoB0914
CmoCh10G009600Cucurbita maxima (Rimu)cmacmoB067
CmoCh10G009600Cucurbita maxima (Rimu)cmacmoB105
CmoCh10G009600Cucurbita maxima (Rimu)cmacmoB538
CmoCh10G009600Cucurbita maxima (Rimu)cmacmoB573
CmoCh10G009600Wild cucumber (PI 183967)cmocpiB050
CmoCh10G009600Cucumber (Chinese Long) v2cmocuB047
CmoCh10G009600Melon (DHL92) v3.5.1cmomeB058
CmoCh10G009600Melon (DHL92) v3.5.1cmomeB070
CmoCh10G009600Watermelon (Charleston Gray)cmowcgB043
CmoCh10G009600Watermelon (Charleston Gray)cmowcgB045
CmoCh10G009600Watermelon (97103) v1cmowmB037
CmoCh10G009600Watermelon (97103) v1cmowmB058
CmoCh10G009600Cucurbita pepo (Zucchini)cmocpeB053
CmoCh10G009600Cucurbita pepo (Zucchini)cmocpeB055
CmoCh10G009600Cucurbita pepo (Zucchini)cmocpeB062
CmoCh10G009600Cucurbita pepo (Zucchini)cmocpeB074
CmoCh10G009600Bottle gourd (USVL1VR-Ls)cmolsiB031
CmoCh10G009600Bottle gourd (USVL1VR-Ls)cmolsiB059
CmoCh10G009600Cucumber (Gy14) v2cgybcmoB013