CmoCh08G012310.1 (mRNA) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh08G012310.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	(MYB-IF25 transcription factor) (R2R3 Myb transcription factor MYB-IF25)
Location	Cmo_Chr08 : 7796804 .. 7798610 (-)
Sequence length	435

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAGAGAGAATTTAGAGAGAGAGAGAGAATTTAGAGAGAGAGAGAGTGATCTTCCATTAACAAAGCAGGTTGTGAAGGAAGATGTGCGAGTCTATATAAGGCGTTGAGAGACAATTCATCTGATCTCTTTCAGGCAAGTGTCTGTTCATGAGGATGGGGAGAACACCGTGCTGTGAGAAGGAAGGGCTGAGAAGAGGCCGCTGGACGGCGGTGGAAGACAATAAACTGAAGAAGTATATCGAAGCGAACGGAGAAGGTTCGTGGAGATTGTTGCCGAAGAATGCTGGTGAGATTGATTTCGATTTGATATTTGTTTTTGTTTTTGTTTTTTTTTTGTGCGATTAAGTACTGCGATTCTTCTGGTTCTGTCTGAGATTTTGAATTGATTTGGCTTCTTCTGGTTCTGTCTATGATTACGAATTGGTCCTGAATGTGTGTGTGAAAATTTAGGACTGTTGAGATGTGGAAAGAGTTGCAGGTTGCGATGGATTAATTACTTGAGAGCGGATTTGAAGAGAGGGAATATCACTCAACAAGAAGATGAAACTATTCTCAAATTGCACACGACTTTCGGCAATCGGTTCGTTTCTCTCTCCTTTTTTTTTTCTTCTTCTCACAATTAAGATTGATAGCGAGGAAGCATGGAAGCATTGCAGTTTTCAAACATATTTTTACACCTTGATTTCAAACATAGTTTTCCACTTTAATTTCTAACATAATTTTACTCCTCGATAATAAAGTTCAATCGGAGTATAGAATCTCAAATAAACGCAATTTGTATGAGTAAATCACCATTTGAAGCTTCACAACTGACCTCGTGTTTTGTTATTCTCTTCTTCTTCTTGATCATCACAATCATTTTATAGCACATTTGAAATTTTAATTAATTTATTTTTTTTGTATTCTCATCTTTTGTGATTTTATTTCTTTTCCTCTTGTAATTTTCATTTTAAGCTCCACAATTGACTCCTGCTGTGTTATTCTTGTCTACATCATTCTTTTCCTCATCCTCATAATGATTTTCTGTTTGGCACGTTCGAACTTTTATTTTTATTTTATTTTTTCTCCTTTTCTGATTTTCTCGCCTTTTTTTTTTCCTTTTAATTTCATTTGATGCTTCTCCAACGGACTTCGGCTTTGTGTTCTTGTCCACATCGTTCTCTTCTTGATCATCACAATCCTTTTTTCGTCTTTTCTTTTCTTTTTAATTTCATTTGATGCTTCTCCTAGTGACTTCGGCTCTGTGTTCTTGTCCACATCGTTCTCTTCTTGATCATCACAATCCTTTTTTTCATCTTTTTTTTTCCTTTTAATTTCATTTGATGCTTATCCAACTGACTTCGGCTTTGTGTTCTTGTCCGCATCGTTCTCTTGTTGATCATCACAATCCTTTTTTCGTTTTTTTTTTCCTTTTAATTTCATTTGAAGCTTCTCCAACTGACTTCGGCTTTGTGTTCTTGTCCACATCATTCTCTTGTTGATCATCACAATCCTTTTTTCGTCTTTTTTTTTTCCTTTTAATTTCATTTGATGCTTCTCCAACTGACTTCGGCTGTGTTCTTGTTCACATCGTTCTCTTCTTGATCATCACAATCCTTTTTTCGTCTTTTTTTTTTCCTTTTAATTTCATTTGATGCTTCTCCAACTGACTTCGCTTTTTATTCTCGTCCACATCGTTCTCTTCTTGATCATCACAATCCTTTTCTTTGAGCACATTTGAACTTTTTATTTATTACTTTTTTCTTTATCATTGTGATTTCATAATATTTTTATGTATACTAAATCCAGATTAATGACTAACACATAG

mRNA sequence

AGAGAGAGAATTTAGAGAGAGAGAGAGAATTTAGAGAGAGAGAGAGTGATCTTCCATTAACAAAGCAGGTTGTGAAGGAAGATGTGCGAGTCTATATAAGGCGTTGAGAGACAATTCATCTGATCTCTTTCAGGCAAGTGTCTGTTCATGAGGATGGGGAGAACACCGTGCTGTGAGAAGGAAGGGCTGAGAAGAGGCCGCTGGACGGCGGTGGAAGACAATAAACTGAAGAAGTATATCGAAGCGAACGGAGAAGGTTCGTGGAGATTGTTGCCGAAGAATGCTGGACTGTTGAGATGTGGAAAGAGTTGCAGGTTGCGATGGATTAATTACTTGAGAGCGGATTTGAAGAGAGGGAATATCACTCAACAAGAAGATGAAACTATTCTCAAATTGCACACGACTTTCGGCAATCGATTAATGACTAACACATAG

Coding sequence (CDS)

ATGAGGATGGGGAGAACACCGTGCTGTGAGAAGGAAGGGCTGAGAAGAGGCCGCTGGACGGCGGTGGAAGACAATAAACTGAAGAAGTATATCGAAGCGAACGGAGAAGGTTCGTGGAGATTGTTGCCGAAGAATGCTGGACTGTTGAGATGTGGAAAGAGTTGCAGGTTGCGATGGATTAATTACTTGAGAGCGGATTTGAAGAGAGGGAATATCACTCAACAAGAAGATGAAACTATTCTCAAATTGCACACGACTTTCGGCAATCGATTAATGACTAACACATAG

Homology

[Close]

BLAST of CmoCh08G012310.1 vs. Swiss-Prot
Match: MYB12_ARATH (Transcription factor MYB12 OS=Arabidopsis thaliana GN=MYB12 PE=2 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 3.9e-36
Identity = 66/88 (75.00%), Postives = 76/88 (86.36%), Query Frame = 1


Query: 3  MGRTPCCEKEGLRRGRWTAVEDNKLKKYIEANGEGSWRLLPKNAGLLRCGKSCRLRWINY 62
          MGR PCCEK G++RGRWTA ED  L  YI++NGEGSWR LPKNAGL RCGKSCRLRWINY
Sbjct: 1  MGRAPCCEKVGIKRGRWTAEEDQILSNYIQSNGEGSWRSLPKNAGLKRCGKSCRLRWINY 60

Query: 63 LRADLKRGNITQQEDETILKLHTTFGNR 91
          LR+DLKRGNIT +E+E ++KLH+T GNR
Sbjct: 61 LRSDLKRGNITPEEEELVVKLHSTLGNR 88

[Close]

BLAST of CmoCh08G012310.1 vs. Swiss-Prot
Match: MYBP_MAIZE (Myb-related protein P OS=Zea mays GN=P PE=2 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 5.1e-36
Identity = 67/88 (76.14%), Postives = 76/88 (86.36%), Query Frame = 1


Query: 3  MGRTPCCEKEGLRRGRWTAVEDNKLKKYIEANGEGSWRLLPKNAGLLRCGKSCRLRWINY 62
          MGRTPCCEK GL+RGRWTA ED  L  YI  +GEGSWR LPKNAGLLRCGKSCRLRWINY
Sbjct: 1  MGRTPCCEKVGLKRGRWTAEEDQLLANYIAEHGEGSWRSLPKNAGLLRCGKSCRLRWINY 60

Query: 63 LRADLKRGNITQQEDETILKLHTTFGNR 91
          LRAD+KRGNI+++E++ I+KLH T GNR
Sbjct: 61 LRADVKRGNISKEEEDIIIKLHATLGNR 88

[Close]

BLAST of CmoCh08G012310.1 vs. Swiss-Prot
Match: MYB4_ARATH (Transcription repressor MYB4 OS=Arabidopsis thaliana GN=MYB4 PE=1 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 1.3e-31
Identity = 60/88 (68.18%), Postives = 70/88 (79.55%), Query Frame = 1


Query: 3  MGRTPCCEKEGLRRGRWTAVEDNKLKKYIEANGEGSWRLLPKNAGLLRCGKSCRLRWINY 62
          MGR+PCCEK    +G WT  ED +L  YI+A+GEG WR LPK AGLLRCGKSCRLRWINY
Sbjct: 1  MGRSPCCEKAHTNKGAWTKEEDERLVAYIKAHGEGCWRSLPKAAGLLRCGKSCRLRWINY 60

Query: 63 LRADLKRGNITQQEDETILKLHTTFGNR 91
          LR DLKRGN T++EDE I+KLH+  GN+
Sbjct: 61 LRPDLKRGNFTEEEDELIIKLHSLLGNK 88

[Close]

BLAST of CmoCh08G012310.1 vs. Swiss-Prot
Match: MYB08_ANTMA (Myb-related protein 308 OS=Antirrhinum majus GN=MYB308 PE=2 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 1.3e-31
Identity = 60/88 (68.18%), Postives = 70/88 (79.55%), Query Frame = 1


Query: 3  MGRTPCCEKEGLRRGRWTAVEDNKLKKYIEANGEGSWRLLPKNAGLLRCGKSCRLRWINY 62
          MGR+PCCEK    +G WT  ED++L  YI A+GEG WR LPK AGLLRCGKSCRLRWINY
Sbjct: 1  MGRSPCCEKAHTNKGAWTKEEDDRLVAYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINY 60

Query: 63 LRADLKRGNITQQEDETILKLHTTFGNR 91
          LR DLKRGN T++EDE I+KLH+  GN+
Sbjct: 61 LRPDLKRGNFTEEEDELIIKLHSLLGNK 88

[Close]

BLAST of CmoCh08G012310.1 vs. Swiss-Prot
Match: MYB30_ANTMA (Myb-related protein 330 OS=Antirrhinum majus GN=MYB330 PE=2 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 1.7e-31
Identity = 60/88 (68.18%), Postives = 69/88 (78.41%), Query Frame = 1


Query: 3  MGRTPCCEKEGLRRGRWTAVEDNKLKKYIEANGEGSWRLLPKNAGLLRCGKSCRLRWINY 62
          MGR+PCCEK    +G WT  ED +L  YI A+GEG WR LPK AGLLRCGKSCRLRWINY
Sbjct: 1  MGRSPCCEKAHTNKGAWTKEEDQRLINYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINY 60

Query: 63 LRADLKRGNITQQEDETILKLHTTFGNR 91
          LR DLKRGN T++EDE I+KLH+  GN+
Sbjct: 61 LRPDLKRGNFTEEEDEIIIKLHSLLGNK 88

[Close]

BLAST of CmoCh08G012310.1 vs. TrEMBL
Match: A0A0A0KCZ1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G311520 PE=4 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 1.6e-41
Identity = 81/88 (92.05%), Postives = 83/88 (94.32%), Query Frame = 1


Query: 3  MGRTPCCEKEGLRRGRWTAVEDNKLKKYIEANGEGSWRLLPKNAGLLRCGKSCRLRWINY 62
          MGRTPCCEKEGLRRGRWTA ED+KLKKYIEANGEGSWR LPKNAGLLRCGKSCRLRWINY
Sbjct: 1  MGRTPCCEKEGLRRGRWTAEEDDKLKKYIEANGEGSWRSLPKNAGLLRCGKSCRLRWINY 60

Query: 63 LRADLKRGNITQQEDETILKLHTTFGNR 91
          LR DLKRGNI+ QEDETILKLHTT GNR
Sbjct: 61 LRTDLKRGNISPQEDETILKLHTTLGNR 88

[Close]

BLAST of CmoCh08G012310.1 vs. TrEMBL
Match: A0A067K7L3_JATCU (MYB family protein OS=Jatropha curcas GN=JCGZ_14006 PE=4 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 3.2e-37
Identity = 74/88 (84.09%), Postives = 77/88 (87.50%), Query Frame = 1


Query: 3  MGRTPCCEKEGLRRGRWTAVEDNKLKKYIEANGEGSWRLLPKNAGLLRCGKSCRLRWINY 62
          MGR PCCEK GL+RGRWTA ED KL KYIEANGEGSWR LPKNAGLLRCGKSCRLRWINY
Sbjct: 1  MGRAPCCEKVGLKRGRWTAEEDEKLTKYIEANGEGSWRSLPKNAGLLRCGKSCRLRWINY 60

Query: 63 LRADLKRGNITQQEDETILKLHTTFGNR 91
          LRADLKRGNIT QE+E I KLH + GNR
Sbjct: 61 LRADLKRGNITPQEEEIIFKLHASLGNR 88

[Close]

BLAST of CmoCh08G012310.1 vs. TrEMBL
Match: D5FFI0_MEDTR (MYB transcription factor MYB112 OS=Medicago truncatula PE=2 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 7.1e-37
Identity = 72/88 (81.82%), Postives = 79/88 (89.77%), Query Frame = 1


Query: 3  MGRTPCCEKEGLRRGRWTAVEDNKLKKYIEANGEGSWRLLPKNAGLLRCGKSCRLRWINY 62
          MGRTPCC K GL+RGRWTA ED  L KYI+ANGEGSWR LPKNAGLLRCGKSCRLRWINY
Sbjct: 1  MGRTPCCAKVGLKRGRWTAEEDEILSKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINY 60

Query: 63 LRADLKRGNITQQEDETILKLHTTFGNR 91
          LR DLKRGNI+ QE++TI+KLHTT+GNR
Sbjct: 61 LRTDLKRGNISAQEEDTIVKLHTTYGNR 88

[Close]

BLAST of CmoCh08G012310.1 vs. TrEMBL
Match: B9RZL8_RICCO (R2r3-myb transcription factor, putative OS=Ricinus communis GN=RCOM_0999660 PE=4 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 1.2e-36
Identity = 73/88 (82.95%), Postives = 78/88 (88.64%), Query Frame = 1


Query: 3  MGRTPCCEKEGLRRGRWTAVEDNKLKKYIEANGEGSWRLLPKNAGLLRCGKSCRLRWINY 62
          MGR PCCEK GL++GRWTA ED  L KYI ANGEGSWR LPKNAGLLRCGKSCRLRWINY
Sbjct: 1  MGRAPCCEKVGLKKGRWTAEEDEILTKYILANGEGSWRSLPKNAGLLRCGKSCRLRWINY 60

Query: 63 LRADLKRGNITQQEDETILKLHTTFGNR 91
          LRADLKRGNIT++EDETI+KLHT  GNR
Sbjct: 61 LRADLKRGNITKEEDETIVKLHTALGNR 88

[Close]

BLAST of CmoCh08G012310.1 vs. TrEMBL
Match: B9HWW8_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s15090g PE=4 SV=2)

HSP 1 Score: 157.9 bits (398), Expect = 6.0e-36
Identity = 71/88 (80.68%), Postives = 78/88 (88.64%), Query Frame = 1


Query: 3  MGRTPCCEKEGLRRGRWTAVEDNKLKKYIEANGEGSWRLLPKNAGLLRCGKSCRLRWINY 62
          MGR PCCEK GL++GRWTA ED  L KYI ANGEGSW+ LPKNAGLLRCGKSCRLRWINY
Sbjct: 1  MGRAPCCEKVGLKKGRWTAEEDEVLTKYILANGEGSWKSLPKNAGLLRCGKSCRLRWINY 60

Query: 63 LRADLKRGNITQQEDETILKLHTTFGNR 91
          LRADLKRGNIT++E+ETI+KLHT  GNR
Sbjct: 61 LRADLKRGNITKEEEETIVKLHTALGNR 88

[Close]

BLAST of CmoCh08G012310.1 vs. TAIR10
Match: AT2G47460.1 (AT2G47460.1 myb domain protein 12)

HSP 1 Score: 151.8 bits (382), Expect = 2.2e-37
Identity = 66/88 (75.00%), Postives = 76/88 (86.36%), Query Frame = 1


Query: 3  MGRTPCCEKEGLRRGRWTAVEDNKLKKYIEANGEGSWRLLPKNAGLLRCGKSCRLRWINY 62
          MGR PCCEK G++RGRWTA ED  L  YI++NGEGSWR LPKNAGL RCGKSCRLRWINY
Sbjct: 1  MGRAPCCEKVGIKRGRWTAEEDQILSNYIQSNGEGSWRSLPKNAGLKRCGKSCRLRWINY 60

Query: 63 LRADLKRGNITQQEDETILKLHTTFGNR 91
          LR+DLKRGNIT +E+E ++KLH+T GNR
Sbjct: 61 LRSDLKRGNITPEEEELVVKLHSTLGNR 88

[Close]

BLAST of CmoCh08G012310.1 vs. TAIR10
Match: AT5G49330.1 (AT5G49330.1 myb domain protein 111)

HSP 1 Score: 150.2 bits (378), Expect = 6.4e-37
Identity = 68/88 (77.27%), Postives = 73/88 (82.95%), Query Frame = 1


Query: 3  MGRTPCCEKEGLRRGRWTAVEDNKLKKYIEANGEGSWRLLPKNAGLLRCGKSCRLRWINY 62
          MGR PCCEK GL+RGRWTA ED  L KYI+ NGEGSWR LPK AGLLRCGKSCRLRWINY
Sbjct: 1  MGRAPCCEKIGLKRGRWTAEEDEILTKYIQTNGEGSWRSLPKKAGLLRCGKSCRLRWINY 60

Query: 63 LRADLKRGNITQQEDETILKLHTTFGNR 91
          LR DLKRGNIT  E+E I+KLH+  GNR
Sbjct: 61 LRRDLKRGNITSDEEEIIVKLHSLLGNR 88

[Close]

BLAST of CmoCh08G012310.1 vs. TAIR10
Match: AT3G62610.1 (AT3G62610.1 myb domain protein 11)

HSP 1 Score: 147.9 bits (372), Expect = 3.2e-36
Identity = 64/91 (70.33%), Postives = 76/91 (83.52%), Query Frame = 1


Query: 3  MGRTPCCEKEGLRRGRWTAVEDNKLKKYIEANGEGSWRLLPKNAGLLRCGKSCRLRWINY 62
          MGR PCCEK G+++GRWTA ED  L  YI++NGEGSWR LPKNAGL RCGKSCRLRWINY
Sbjct: 1  MGRAPCCEKVGIKKGRWTAEEDRTLSDYIQSNGEGSWRSLPKNAGLKRCGKSCRLRWINY 60

Query: 63 LRADLKRGNITQQEDETILKLHTTFGNRLMT 94
          LR+D+KRGNIT +E++ I+KLH+T G R  T
Sbjct: 61 LRSDIKRGNITPEEEDVIVKLHSTLGTRWST 91

[Close]

BLAST of CmoCh08G012310.1 vs. TAIR10
Match: AT4G38620.1 (AT4G38620.1 myb domain protein 4)

HSP 1 Score: 136.7 bits (343), Expect = 7.3e-33
Identity = 60/88 (68.18%), Postives = 70/88 (79.55%), Query Frame = 1


Query: 3  MGRTPCCEKEGLRRGRWTAVEDNKLKKYIEANGEGSWRLLPKNAGLLRCGKSCRLRWINY 62
          MGR+PCCEK    +G WT  ED +L  YI+A+GEG WR LPK AGLLRCGKSCRLRWINY
Sbjct: 1  MGRSPCCEKAHTNKGAWTKEEDERLVAYIKAHGEGCWRSLPKAAGLLRCGKSCRLRWINY 60

Query: 63 LRADLKRGNITQQEDETILKLHTTFGNR 91
          LR DLKRGN T++EDE I+KLH+  GN+
Sbjct: 61 LRPDLKRGNFTEEEDELIIKLHSLLGNK 88

[Close]

BLAST of CmoCh08G012310.1 vs. TAIR10
Match: AT2G16720.1 (AT2G16720.1 myb domain protein 7)

HSP 1 Score: 136.7 bits (343), Expect = 7.3e-33
Identity = 59/88 (67.05%), Postives = 70/88 (79.55%), Query Frame = 1


Query: 3  MGRTPCCEKEGLRRGRWTAVEDNKLKKYIEANGEGSWRLLPKNAGLLRCGKSCRLRWINY 62
          MGR+PCCEKE + +G WT  ED +L  YI+++GEG WR LP+ AGLLRCGKSCRLRWINY
Sbjct: 1  MGRSPCCEKEHMNKGAWTKEEDERLVSYIKSHGEGCWRSLPRAAGLLRCGKSCRLRWINY 60

Query: 63 LRADLKRGNITQQEDETILKLHTTFGNR 91
          LR DLKRGN T  EDE I+KLH+  GN+
Sbjct: 61 LRPDLKRGNFTHDEDELIIKLHSLLGNK 88

[Close]

BLAST of CmoCh08G012310.1 vs. NCBI nr
Match: gi|659117020|ref|XP_008458382.1| (PREDICTED: myb-related protein Myb4-like [Cucumis melo])

HSP 1 Score: 177.9 bits (450), Expect = 8.1e-42
Identity = 82/88 (93.18%), Postives = 83/88 (94.32%), Query Frame = 1


Query: 3  MGRTPCCEKEGLRRGRWTAVEDNKLKKYIEANGEGSWRLLPKNAGLLRCGKSCRLRWINY 62
          MGRTPCCEKEGLRRGRWTA ED+KLKKYIEANGEGSWR LPKNAGLLRCGKSCRLRWINY
Sbjct: 1  MGRTPCCEKEGLRRGRWTAEEDDKLKKYIEANGEGSWRSLPKNAGLLRCGKSCRLRWINY 60

Query: 63 LRADLKRGNITQQEDETILKLHTTFGNR 91
          LR DLKRGNIT QEDETILKLHTT GNR
Sbjct: 61 LRTDLKRGNITPQEDETILKLHTTLGNR 88

[Close]

BLAST of CmoCh08G012310.1 vs. NCBI nr
Match: gi|449464726|ref|XP_004150080.1| (PREDICTED: transcription repressor MYB6 [Cucumis sativus])

HSP 1 Score: 176.4 bits (446), Expect = 2.4e-41
Identity = 81/88 (92.05%), Postives = 83/88 (94.32%), Query Frame = 1


Query: 3  MGRTPCCEKEGLRRGRWTAVEDNKLKKYIEANGEGSWRLLPKNAGLLRCGKSCRLRWINY 62
          MGRTPCCEKEGLRRGRWTA ED+KLKKYIEANGEGSWR LPKNAGLLRCGKSCRLRWINY
Sbjct: 1  MGRTPCCEKEGLRRGRWTAEEDDKLKKYIEANGEGSWRSLPKNAGLLRCGKSCRLRWINY 60

Query: 63 LRADLKRGNITQQEDETILKLHTTFGNR 91
          LR DLKRGNI+ QEDETILKLHTT GNR
Sbjct: 61 LRTDLKRGNISPQEDETILKLHTTLGNR 88

[Close]

BLAST of CmoCh08G012310.1 vs. NCBI nr
Match: gi|700192194|gb|KGN47398.1| (hypothetical protein Csa_6G311520 [Cucumis sativus])

HSP 1 Score: 176.4 bits (446), Expect = 2.4e-41
Identity = 81/88 (92.05%), Postives = 83/88 (94.32%), Query Frame = 1


Query: 3  MGRTPCCEKEGLRRGRWTAVEDNKLKKYIEANGEGSWRLLPKNAGLLRCGKSCRLRWINY 62
          MGRTPCCEKEGLRRGRWTA ED+KLKKYIEANGEGSWR LPKNAGLLRCGKSCRLRWINY
Sbjct: 1  MGRTPCCEKEGLRRGRWTAEEDDKLKKYIEANGEGSWRSLPKNAGLLRCGKSCRLRWINY 60

Query: 63 LRADLKRGNITQQEDETILKLHTTFGNR 91
          LR DLKRGNI+ QEDETILKLHTT GNR
Sbjct: 61 LRTDLKRGNISPQEDETILKLHTTLGNR 88

[Close]

BLAST of CmoCh08G012310.1 vs. NCBI nr
Match: gi|802689561|ref|XP_012082867.1| (PREDICTED: myb-related protein P-like [Jatropha curcas])

HSP 1 Score: 162.2 bits (409), Expect = 4.6e-37
Identity = 74/88 (84.09%), Postives = 77/88 (87.50%), Query Frame = 1


Query: 3  MGRTPCCEKEGLRRGRWTAVEDNKLKKYIEANGEGSWRLLPKNAGLLRCGKSCRLRWINY 62
          MGR PCCEK GL+RGRWTA ED KL KYIEANGEGSWR LPKNAGLLRCGKSCRLRWINY
Sbjct: 1  MGRAPCCEKVGLKRGRWTAEEDEKLTKYIEANGEGSWRSLPKNAGLLRCGKSCRLRWINY 60

Query: 63 LRADLKRGNITQQEDETILKLHTTFGNR 91
          LRADLKRGNIT QE+E I KLH + GNR
Sbjct: 61 LRADLKRGNITPQEEEIIFKLHASLGNR 88

[Close]

BLAST of CmoCh08G012310.1 vs. NCBI nr
Match: gi|149728070|gb|ABR28345.1| (MYB transcription factor MYB112 [Medicago truncatula])

HSP 1 Score: 161.0 bits (406), Expect = 1.0e-36
Identity = 72/88 (81.82%), Postives = 79/88 (89.77%), Query Frame = 1


Query: 3  MGRTPCCEKEGLRRGRWTAVEDNKLKKYIEANGEGSWRLLPKNAGLLRCGKSCRLRWINY 62
          MGRTPCC K GL+RGRWTA ED  L KYI+ANGEGSWR LPKNAGLLRCGKSCRLRWINY
Sbjct: 1  MGRTPCCAKVGLKRGRWTAEEDEILSKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINY 60

Query: 63 LRADLKRGNITQQEDETILKLHTTFGNR 91
          LR DLKRGNI+ QE++TI+KLHTT+GNR
Sbjct: 61 LRTDLKRGNISAQEEDTIVKLHTTYGNR 88

The following BLAST results are available for this feature:

BLAST of CmoCh08G012310.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
MYB12_ARATH	3.9e-36	75.00	Transcription factor MYB12 OS=Arabidopsis thaliana GN=MYB12 PE=2 SV=1	[more]
MYBP_MAIZE	5.1e-36	76.14	Myb-related protein P OS=Zea mays GN=P PE=2 SV=1	[more]
MYB4_ARATH	1.3e-31	68.18	Transcription repressor MYB4 OS=Arabidopsis thaliana GN=MYB4 PE=1 SV=1	[more]
MYB08_ANTMA	1.3e-31	68.18	Myb-related protein 308 OS=Antirrhinum majus GN=MYB308 PE=2 SV=1	[more]
MYB30_ANTMA	1.7e-31	68.18	Myb-related protein 330 OS=Antirrhinum majus GN=MYB330 PE=2 SV=1	[more]

BLAST of CmoCh08G012310.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KCZ1_CUCSA	1.6e-41	92.05	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G311520 PE=4 SV=1	[more]
A0A067K7L3_JATCU	3.2e-37	84.09	MYB family protein OS=Jatropha curcas GN=JCGZ_14006 PE=4 SV=1	[more]
D5FFI0_MEDTR	7.1e-37	81.82	MYB transcription factor MYB112 OS=Medicago truncatula PE=2 SV=1	[more]
B9RZL8_RICCO	1.2e-36	82.95	R2r3-myb transcription factor, putative OS=Ricinus communis GN=RCOM_0999660 PE=4...	[more]
B9HWW8_POPTR	6.0e-36	80.68	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s15090g PE=4 SV=2	[more]

BLAST of CmoCh08G012310.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G47460.1	2.2e-37	75.00	myb domain protein 12	[more]
AT5G49330.1	6.4e-37	77.27	myb domain protein 111	[more]
AT3G62610.1	3.2e-36	70.33	myb domain protein 11	[more]
AT4G38620.1	7.3e-33	68.18	myb domain protein 4	[more]
AT2G16720.1	7.3e-33	67.05	myb domain protein 7	[more]

BLAST of CmoCh08G012310.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659117020\|ref\|XP_008458382.1\|	8.1e-42	93.18	PREDICTED: myb-related protein Myb4-like [Cucumis melo]	[more]
gi\|449464726\|ref\|XP_004150080.1\|	2.4e-41	92.05	PREDICTED: transcription repressor MYB6 [Cucumis sativus]	[more]
gi\|700192194\|gb\|KGN47398.1\|	2.4e-41	92.05	hypothetical protein Csa_6G311520 [Cucumis sativus]	[more]
gi\|802689561\|ref\|XP_012082867.1\|	4.6e-37	84.09	PREDICTED: myb-related protein P-like [Jatropha curcas]	[more]
gi\|149728070\|gb\|ABR28345.1\|	1.0e-36	81.82	MYB transcription factor MYB112 [Medicago truncatula]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR001005	SANT/Myb
IPR009057	Homeobox-like_sf
IPR017930	Myb_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0051555	flavonol biosynthetic process
cellular_component	GO:0005667	transcription factor complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh08G012310	CmoCh08G012310	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh08G012310.1	CmoCh08G012310.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh08G012310.1.CDS.3	CmoCh08G012310.1.CDS.3	CDS
CmoCh08G012310.1.CDS.2	CmoCh08G012310.1.CDS.2	CDS
CmoCh08G012310.1.CDS.1	CmoCh08G012310.1.CDS.1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh08G012310.1.five_prime_UTR.1	CmoCh08G012310.1.five_prime_UTR.1	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh08G012310.1.exon.3	CmoCh08G012310.1.exon.3	exon
CmoCh08G012310.1.exon.2	CmoCh08G012310.1.exon.2	exon
CmoCh08G012310.1.exon.1	CmoCh08G012310.1.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	PFAM	PF00249	Myb_DNA-binding	coord: 16..63 score: 3.7
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 15..65 score: 8.4
IPR009057	Homeodomain-like	GENE3D	G3DSA:1.10.10.60		coord: 67..90 score: 5.0E-8coord: 7..66 score: 1.1
IPR009057	Homeodomain-like	unknown	SSF46689	Homeodomain-like	coord: 17..91 score: 6.84
IPR017930	Myb domain	PROFILE	PS51294	HTH_MYB	coord: 11..67 score: 20
None	No IPR available	PANTHER	PTHR10641	MYB-LIKE DNA-BINDING PROTEIN MYB	coord: 1..90 score: 8.7
None	No IPR available	PANTHER	PTHR10641:SF595	MYB TRANSCRIPTION FACTOR	coord: 1..90 score: 8.7