CmoCh08G010800.1 (mRNA) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh08G010800.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Sieve element occlusion protein 1
Location	Cmo_Chr08 : 6949029 .. 6949986 (-)
Sequence length	814

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AACTAACCAAACCAAAATCATGTGTGCTTCATTTGCACCTCGTCCAAAGATCTCGGTCGTTCCATTGGCGCTCGCTCTAATGCAAAAAACAGACAAGGAACAGACGAATCTAAAGCACTTATCCGACGATGTTATCATGAATCACTTATTCACCAAACATGGCGACGACGAGACAATAAAGATCGACCTTAACGACTACATTTCGTTCATCGAAAACGTCATTAAATCCTCGGATCAGATTTCCGCAGCTTCTCATTGGGTTAGATATCACATGCTTTAATCTCTCCCCTTCTTATTCTCCCTTCTTATGCAAATTTTTATGATCATTTTAGGCTCAGGGAAGCAAAGTGCATGTTGAACTTTCAGATGACTCCTTCACATATCTCTCCTCAATTGAACCACCAGTTTGCACCCTTCATGATATCTCAAAACAGGTCTTTGCTTAGCCAAAAATCTTGAGATTTTAACCTCACTACTTTTGTATTGAAATAATGTCAATTTTCAGATGGGATGTAAGGCTGCTGGGATAGATATAGCTCACAAAACAACTCTTGATATTCTAAGTAAGCTGACCAAATATTCATGGGAGGCGAAGGCCGTGCTGATCTTCGCGGCGTTCGCTATGAACTATGGAGCTTTGTGGCACCTCGACAATTACTCGCGCTCGGACCCGCTCGCTAAATCGTTGGCGATGATCAAGCGAGTGGGTTCGCTGAGGAAGGAGCTGGATTCTGTGCAATATGGGCAGGTGTTTTTTGGGCCCAACAGTTTGATATACAGCTGCTTGAAGGCCATTAAATACATGAATGAATTCAAGAACTTGTCCAAATATGATATCAAAGAAGTGCCTGAATTGTCTGCGGCACTTCGCCGGATCCCATTGGTTTCTTATTGGATTGTTCATGCTCTTGTGGCTTCCAGCATTGATCTTCATTGCTATCTTTCTGGCACGGAGTAA

mRNA sequence

AACTAACCAAACCAAAATCATGTGTGCTTCATTTGCACCTCGTCCAAAGATCTCGGTCGTTCCATTGGCGCTCGCTCTAATGCAAAAAACAGACAAGGAACAGACGAATCTAAAGCACTTATCCGACGATGTTATCATGAATCACTTATTCACCAAACATGGCGACGACGAGACAATAAAGATCGACCTTAACGACTACATTTCGTTCATCGAAAACGTCATTAAATCCTCGGATCAGATTTCCGCAGCTTCTCATTGGGCTCAGGGAAGCAAAGTGCATGTTGAACTTTCAGATGACTCCTTCACATATCTCTCCTCAATTGAACCACCAGTTTGCACCCTTCATGATATCTCAAAACAGATGGGATGTAAGGCTGCTGGGATAGATATAGCTCACAAAACAACTCTTGATATTCTAAGTAAGCTGACCAAATATTCATGGGAGGCGAAGGCCGTGCTGATCTTCGCGGCGTTCGCTATGAACTATGGAGCTTTGTGGCACCTCGACAATTACTCGCGCTCGGACCCGCTCGCTAAATCGTTGGCGATGATCAAGCGAGTGGGTTCGCTGAGGAAGGAGCTGGATTCTGTGCAATATGGGCAGGTGTTTTTTGGGCCCAACAGTTTGATATACAGCTGCTTGAAGGCCATTAAATACATGAATGAATTCAAGAACTTGTCCAAATATGATATCAAAGAAGTGCCTGAATTGTCTGCGGCACTTCGCCGGATCCCATTGGTTTCTTATTGGATTGTTCATGCTCTTGTGGCTTCCAGCATTGATCTTCATTGCTATCTTTCTGGCACGGAGTAA

Coding sequence (CDS)

ATGTGTGCTTCATTTGCACCTCGTCCAAAGATCTCGGTCGTTCCATTGGCGCTCGCTCTAATGCAAAAAACAGACAAGGAACAGACGAATCTAAAGCACTTATCCGACGATGTTATCATGAATCACTTATTCACCAAACATGGCGACGACGAGACAATAAAGATCGACCTTAACGACTACATTTCGTTCATCGAAAACGTCATTAAATCCTCGGATCAGATTTCCGCAGCTTCTCATTGGGCTCAGGGAAGCAAAGTGCATGTTGAACTTTCAGATGACTCCTTCACATATCTCTCCTCAATTGAACCACCAGTTTGCACCCTTCATGATATCTCAAAACAGATGGGATGTAAGGCTGCTGGGATAGATATAGCTCACAAAACAACTCTTGATATTCTAAGTAAGCTGACCAAATATTCATGGGAGGCGAAGGCCGTGCTGATCTTCGCGGCGTTCGCTATGAACTATGGAGCTTTGTGGCACCTCGACAATTACTCGCGCTCGGACCCGCTCGCTAAATCGTTGGCGATGATCAAGCGAGTGGGTTCGCTGAGGAAGGAGCTGGATTCTGTGCAATATGGGCAGGTGTTTTTTGGGCCCAACAGTTTGATATACAGCTGCTTGAAGGCCATTAAATACATGAATGAATTCAAGAACTTGTCCAAATATGATATCAAAGAAGTGCCTGAATTGTCTGCGGCACTTCGCCGGATCCCATTGGTTTCTTATTGGATTGTTCATGCTCTTGTGGCTTCCAGCATTGATCTTCATTGCTATCTTTCTGGCACGGAGTAA

Homology

[Close]

BLAST of CmoCh08G010800.1 vs. Swiss-Prot
Match: SEOB_ARATH (Protein SIEVE ELEMENT OCCLUSION B OS=Arabidopsis thaliana GN=SEOB PE=1 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 3.6e-15
Identity = 60/227 (26.43%), Postives = 107/227 (47.14%), Query Frame = 1


Query: 29  TNLKHLSDDVIMNHLFTKHGDDETIKIDLNDYISFIENVIKSSDQISAASHWAQGSKVHV 88
           T L   SD+ +M  L  +    +  ++ +   +S +E+++   D+ +  S     S + +
Sbjct: 32  TGLAMSSDESMMLKLIQQTHSPDAREVQVRGLLSLVEDIL---DRATLDSEDTNASMLPL 91

Query: 89  ELSDDSF--TYLSSIEPPVCTLHDISKQMGCKAAGIDIAHKTTLDILSKLTKYSWEAKAV 148
              D     + +S ++     +  ++ ++  K+     +H+ T+ +   L+ + W+ K V
Sbjct: 92  PTEDKLMQSSMMSVLDSVSYAIDRVACEIAYKSLTGSDSHEITMSVFEHLSSFQWDGKLV 151

Query: 149 LIFAAFAMNYGALWHLDNYSRSDPLAKSLAMIKRVG-SLRKELDSVQYGQVFFGPNSLIY 208
           L  AAFA+NYG  W L  +   + LAKSLAM+K V    R  L+SV  G      N LI 
Sbjct: 152 LTLAAFALNYGEFWLLVQFYSKNQLAKSLAMLKLVPVQNRVTLESVSQGL-----NDLIR 211

Query: 209 SCLKAIKYMNEFKNL-SKYDIKEVPELSAALRRIPLVSYWIVHALVA 252
                   + E   L  +Y   +VP+LS  L  IP+  YW + +++A
Sbjct: 212 EMKSVTACVVELSELPDRYITPDVPQLSRILSTIPIAVYWTIRSVIA 250

[Close]

BLAST of CmoCh08G010800.1 vs. Swiss-Prot
Match: SEOA_ARATH (Protein SIEVE ELEMENT OCCLUSION A OS=Arabidopsis thaliana GN=SEOA PE=1 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 2.3e-09
Identity = 64/235 (27.23%), Postives = 103/235 (43.83%), Query Frame = 1


Query: 34  LSDDVIMNHLFTKHGDDETIKIDLNDYISFIENVIKSSDQISAASHWAQGSKVHVELSDD 93
           LSDD +M     K    + I  D+   +S + ++ KS    S  S   + S V  + +D 
Sbjct: 136 LSDDRVMADRVLKTHSPDMIFFDVTSLLSVVNDIFKSHVP-SIDSSAPKPSLVFKDYADH 195

Query: 94  SFTYLSSIEPPVCTLHDISKQMGCKAAG-------------IDIAHKTTLDILSKLTKYS 153
           +     S E     +  IS ++ CK                +D  + TT  +LS ++KY 
Sbjct: 196 T-----SFETFADLIDQISCEIDCKCLHGGESHGMMTSGLHLDSRNTTTFSVLSLVSKYR 255

Query: 154 WEAKAVLIFAAFAMNYGALWHLDNYSRSDPLAKSLAMIKRVGSLRKELDSVQYGQVFFGP 213
           W+AK VL+ +A A+ YG    L     ++ L KSLA+IK++ S            +F   
Sbjct: 256 WDAKLVLVLSALAVKYGVFLLLAETHATNQLTKSLALIKQLPS------------IFSRQ 315

Query: 214 NSLIYSCLKAIKYMNEFKNLSK--YDIKEVP--ELSAALR-RIPLVSYWIVHALV 251
           N+L     K    M +  +L+    DI ++P   ++AA    IP   YWIV  ++
Sbjct: 316 NALHQRLDKTRILMQDMVDLTTTIIDIYQLPPNHITAAFTDHIPTAVYWIVRCVL 352

[Close]

BLAST of CmoCh08G010800.1 vs. TrEMBL
Match: E5GC85_CUCME (Putative uncharacterized protein (Fragment) OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 276.9 bits (707), Expect = 2.5e-71
Identity = 133/241 (55.19%), Postives = 179/241 (74.27%), Query Frame = 1


Query: 24  TDKEQTNLKHLSDDVIMNHLFTKHGDDETIKIDLNDYISFIENVIKSSDQISAASHWAQG 83
           T KE+ + +H SD+V+  H++ KH DD+T KIDL+ YIS IE++I ++D+I+   H  +G
Sbjct: 24  TPKEELSTRHYSDEVVTGHIYAKHRDDDTTKIDLHSYISVIESIITTADRITDTVH--RG 83

Query: 84  SKVHVELSDDSFTYLSSIEPPVCTLHDISKQMGCKAAGIDIAHKTTLDILSKLTKYSWEA 143
           S+  +  S+DS    + IEPP+CTLH IS ++ CKA GI+ AH+TT++I   L  Y WEA
Sbjct: 84  SEGRLVYSNDSLASTAVIEPPLCTLHHISSELSCKAPGIEKAHETTIEIFEILANYPWEA 143

Query: 144 KAVLIFAAFAMNYGALWHLDNYSRSDPLAKSLAMIKRVGSLRKELDSVQYGQVFFGPNSL 203
           KA L   AFA +YG LWHL +YS++DPLAKSLA+IK+VG+L+K LDS++Y QV   P SL
Sbjct: 144 KAALTLLAFATDYGDLWHLYHYSQADPLAKSLAIIKKVGTLKKHLDSLRYRQVLLNPKSL 203

Query: 204 IYSCLKAIKYMNEFKNLSKYDIKEVPELSAALRRIPLVSYWIVHALVASSIDLHCYLSGT 263
           I SCL+A+KYM+E K  SKYD KE+PEL AALR IPLV+YW++H +VAS I+L  YLS T
Sbjct: 204 IQSCLQALKYMSEIKEFSKYDAKELPELPAALRLIPLVTYWVIHTIVASKIELSTYLSET 262

Query: 264 E 265
           E
Sbjct: 264 E 262

[Close]

BLAST of CmoCh08G010800.1 vs. TrEMBL
Match: A0A0A0LIA4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G199900 PE=4 SV=1)

HSP 1 Score: 276.2 bits (705), Expect = 4.2e-71
Identity = 132/241 (54.77%), Postives = 180/241 (74.69%), Query Frame = 1


Query: 24  TDKEQTNLKHLSDDVIMNHLFTKHGDDETIKIDLNDYISFIENVIKSSDQISAASHWAQG 83
           T KE+ + +H SD+V+ +H++ KH DD+T KIDL++YIS IE++I ++D+I+   H  +G
Sbjct: 24  TTKEELSTRHYSDEVVTSHIYAKHRDDDTAKIDLHNYISVIESIITTADRITDTVH--RG 83

Query: 84  SKVHVELSDDSFTYLSSIEPPVCTLHDISKQMGCKAAGIDIAHKTTLDILSKLTKYSWEA 143
           S+  +  S+DS    + IEPP+CTLH IS ++ CK  GI+ AH+TT++I   L  Y WEA
Sbjct: 84  SEGRLVYSNDSLASAAVIEPPLCTLHRISSELSCKPPGIEKAHETTIEIFEILANYPWEA 143

Query: 144 KAVLIFAAFAMNYGALWHLDNYSRSDPLAKSLAMIKRVGSLRKELDSVQYGQVFFGPNSL 203
           KA L   AFA +YG LWHL +YS++DPLAKSLA+IK+V +L+K LDS++Y QV   P SL
Sbjct: 144 KAALTLLAFAADYGDLWHLYHYSQADPLAKSLAIIKKVATLKKHLDSLRYRQVLLNPKSL 203

Query: 204 IYSCLKAIKYMNEFKNLSKYDIKEVPELSAALRRIPLVSYWIVHALVASSIDLHCYLSGT 263
           I SCL+AIKYMNE K  +KYD+KE+PEL AALR IPLV+YW++H +VAS I+L  YLS T
Sbjct: 204 IQSCLQAIKYMNEIKEFAKYDVKELPELPAALRLIPLVTYWVIHTIVASKIELSTYLSET 262

Query: 264 E 265
           E
Sbjct: 264 E 262

[Close]

BLAST of CmoCh08G010800.1 vs. TrEMBL
Match: A0A0A0LIL1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G196890 PE=4 SV=1)

HSP 1 Score: 275.4 bits (703), Expect = 7.2e-71
Identity = 139/255 (54.51%), Postives = 183/255 (71.76%), Query Frame = 1


Query: 12  SVVPLALALMQKTD-KEQTNLKHLSDDVIMNHLFTKHGDDETIKIDLNDYISFIENVIKS 71
           S  P+ L   Q T+ KE+ + +H SDD++  H++ KH DD+T+KIDL +YIS IEN+I+ 
Sbjct: 9   STAPMPLHSKQSTNPKEELSTRHYSDDLVTGHIYAKHRDDDTVKIDLPNYISVIENIIEI 68

Query: 72  SDQISAASHWAQGSKVHVELSDDSFTYLSS-IEPPVCTLHDISKQMGCKAAGIDIAHKTT 131
           +DQI+   H  +G +  +  SD + T  +  IEPP+C LH IS Q+ CKA GI+ AH+TT
Sbjct: 69  ADQITDNVH--RGIEWRMTRSDAALTTSNVVIEPPLCILHRISSQLSCKAPGIEKAHETT 128

Query: 132 LDILSKLTKYSWEAKAVLIFAAFAMNYGALWHLDNYSRSDPLAKSLAMIKRVGSLRKELD 191
           L I   L  Y WEAKAVL   AFA +YG LWHL +YS  DPLAKSLA+IKRV SL+K LD
Sbjct: 129 LQIFETLANYPWEAKAVLTLIAFATDYGDLWHLHHYSHVDPLAKSLAIIKRVASLKKHLD 188

Query: 192 SVQYGQVFFGPNSLIYSCLKAIKYMNEFKNLSKYDIKEVPELSAALRRIPLVSYWIVHAL 251
           S++Y QV   P SLI SCL+AIK+MNE K  SKYD+KE+PEL +ALR+IPL++YW++H +
Sbjct: 189 SLRYRQVILNPKSLIQSCLQAIKHMNEIKEFSKYDVKELPELPSALRQIPLITYWVIHTI 248

Query: 252 VASSIDLHCYLSGTE 265
           VA+ I+L  YLS TE
Sbjct: 249 VAARIELSTYLSETE 261

[Close]

BLAST of CmoCh08G010800.1 vs. TrEMBL
Match: A0A0A0LNQ7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G193350 PE=4 SV=1)

HSP 1 Score: 274.6 bits (701), Expect = 1.2e-70
Identity = 133/258 (51.55%), Postives = 191/258 (74.03%), Query Frame = 1


Query: 7   PRPKISVVPLALALMQKTDKEQTNLKHLSDDVIMNHLFTKHGDDETIKIDLNDYISFIEN 66
           P P   + P  L  +  T K+  +L+H SD+++ +H++TKH +D  IKID+++YI+ +E+
Sbjct: 4   PLPNNPLAPSVLPKLSAT-KDDQSLRHYSDEIVTSHIYTKHREDNRIKIDVDNYIALVES 63

Query: 67  VIKSSDQISAASHWAQGSKVHVELSDDSFTYLSSIEPPVCTLHDISKQMGCKAAGIDIAH 126
           +I ++D+I+     AQG++  +  SD+ F  +++++PP+CTLH +S Q+ CKA GI+ AH
Sbjct: 64  IITTADRITETV--AQGTEGRLIFSDE-FLNVNAVDPPLCTLHHVSSQLSCKAPGIETAH 123

Query: 127 KTTLDILSKLTKYSWEAKAVLIFAAFAMNYGALWHLDNYSRSDPLAKSLAMIKRVGSLRK 186
           +TTL+IL  L  Y WEAKAVL   AFA  YG +WHL++YS  DPLAKSLAMIKRV  L+K
Sbjct: 124 ETTLEILDILVSYPWEAKAVLTLTAFATEYGDIWHLNHYSLLDPLAKSLAMIKRVPLLKK 183

Query: 187 ELDSVQYGQVFFGPNSLIYSCLKAIKYMNEFKNLSKYDIKEVPELSAALRRIPLVSYWIV 246
           +LDS++Y Q+   PNSLIYSCLKA+KY++  KN SKYDIKE+ ELS+ LR+IPLV+YWI+
Sbjct: 184 QLDSIKYRQLLLTPNSLIYSCLKAMKYISILKNFSKYDIKELSELSSVLRQIPLVAYWII 243

Query: 247 HALVASSIDLHCYLSGTE 265
           H +VAS I++  YL+ TE
Sbjct: 244 HIIVASRIEISSYLNETE 257

[Close]

BLAST of CmoCh08G010800.1 vs. TrEMBL
Match: I6V4B3_CUCMA (Sieve element occlusion protein 1 OS=Cucurbita maxima GN=SEO1 PE=2 SV=1)

HSP 1 Score: 270.4 bits (690), Expect = 2.3e-69
Identity = 135/242 (55.79%), Postives = 171/242 (70.66%), Query Frame = 1


Query: 24  TDKEQTNLKHLSDDVIMNHLFTKHGDDETIKIDLNDYISFIENVIKSSDQISAASH-WAQ 83
           T KE+   KH SD+++  H++ KH DD++ KIDL  YIS IEN+I ++DQI    H    
Sbjct: 23  THKEEVGTKHFSDELVTGHIYAKHRDDDSTKIDLPSYISVIENIITTADQIIDTVHRGTD 82

Query: 84  GSKVHVELSDDSFTYLSSIEPPVCTLHDISKQMGCKAAGIDIAHKTTLDILSKLTKYSWE 143
           G  VH   SD S  +   IEPP+CTLH IS ++ CKA GI+ AH+TTL+I   L  Y WE
Sbjct: 83  GRLVH---SDASLAFNVVIEPPLCTLHRISSELSCKAPGIEKAHETTLEIFEILANYPWE 142

Query: 144 AKAVLIFAAFAMNYGALWHLDNYSRSDPLAKSLAMIKRVGSLRKELDSVQYGQVFFGPNS 203
           AKA L   AFA +YG LWHL +YS +DPLAKSLA+IKRV +L+K LDS++Y QV   P S
Sbjct: 143 AKAALTLIAFAADYGDLWHLHHYSHADPLAKSLAIIKRVATLKKHLDSLRYRQVLLNPKS 202

Query: 204 LIYSCLKAIKYMNEFKNLSKYDIKEVPELSAALRRIPLVSYWIVHALVASSIDLHCYLSG 263
           LI SCL+AIKYM+E +  SKYD+KE+ EL AALR IPLV+YW++H +VAS I+L  YLS 
Sbjct: 203 LIQSCLQAIKYMDEIREFSKYDVKELSELPAALRLIPLVTYWVIHTIVASRIELSSYLSE 261

Query: 264 TE 265
           TE
Sbjct: 263 TE 261

[Close]

BLAST of CmoCh08G010800.1 vs. TAIR10
Match: AT3G01680.1 (AT3G01680.1 Mediator complex subunit Med28 (InterPro:IPR021640))

HSP 1 Score: 83.6 bits (205), Expect = 2.0e-16
Identity = 60/227 (26.43%), Postives = 107/227 (47.14%), Query Frame = 1


Query: 29  TNLKHLSDDVIMNHLFTKHGDDETIKIDLNDYISFIENVIKSSDQISAASHWAQGSKVHV 88
           T L   SD+ +M  L  +    +  ++ +   +S +E+++   D+ +  S     S + +
Sbjct: 32  TGLAMSSDESMMLKLIQQTHSPDAREVQVRGLLSLVEDIL---DRATLDSEDTNASMLPL 91

Query: 89  ELSDDSF--TYLSSIEPPVCTLHDISKQMGCKAAGIDIAHKTTLDILSKLTKYSWEAKAV 148
              D     + +S ++     +  ++ ++  K+     +H+ T+ +   L+ + W+ K V
Sbjct: 92  PTEDKLMQSSMMSVLDSVSYAIDRVACEIAYKSLTGSDSHEITMSVFEHLSSFQWDGKLV 151

Query: 149 LIFAAFAMNYGALWHLDNYSRSDPLAKSLAMIKRVG-SLRKELDSVQYGQVFFGPNSLIY 208
           L  AAFA+NYG  W L  +   + LAKSLAM+K V    R  L+SV  G      N LI 
Sbjct: 152 LTLAAFALNYGEFWLLVQFYSKNQLAKSLAMLKLVPVQNRVTLESVSQGL-----NDLIR 211

Query: 209 SCLKAIKYMNEFKNL-SKYDIKEVPELSAALRRIPLVSYWIVHALVA 252
                   + E   L  +Y   +VP+LS  L  IP+  YW + +++A
Sbjct: 212 EMKSVTACVVELSELPDRYITPDVPQLSRILSTIPIAVYWTIRSVIA 250

[Close]

BLAST of CmoCh08G010800.1 vs. TAIR10
Match: AT3G01670.1 (AT3G01670.1 unknown protein)

HSP 1 Score: 64.3 bits (155), Expect = 1.3e-10
Identity = 64/235 (27.23%), Postives = 103/235 (43.83%), Query Frame = 1


Query: 34  LSDDVIMNHLFTKHGDDETIKIDLNDYISFIENVIKSSDQISAASHWAQGSKVHVELSDD 93
           LSDD +M     K    + I  D+   +S + ++ KS    S  S   + S V  + +D 
Sbjct: 136 LSDDRVMADRVLKTHSPDMIFFDVTSLLSVVNDIFKSHVP-SIDSSAPKPSLVFKDYADH 195

Query: 94  SFTYLSSIEPPVCTLHDISKQMGCKAAG-------------IDIAHKTTLDILSKLTKYS 153
           +     S E     +  IS ++ CK                +D  + TT  +LS ++KY 
Sbjct: 196 T-----SFETFADLIDQISCEIDCKCLHGGESHGMMTSGLHLDSRNTTTFSVLSLVSKYR 255

Query: 154 WEAKAVLIFAAFAMNYGALWHLDNYSRSDPLAKSLAMIKRVGSLRKELDSVQYGQVFFGP 213
           W+AK VL+ +A A+ YG    L     ++ L KSLA+IK++ S            +F   
Sbjct: 256 WDAKLVLVLSALAVKYGVFLLLAETHATNQLTKSLALIKQLPS------------IFSRQ 315

Query: 214 NSLIYSCLKAIKYMNEFKNLSK--YDIKEVP--ELSAALR-RIPLVSYWIVHALV 251
           N+L     K    M +  +L+    DI ++P   ++AA    IP   YWIV  ++
Sbjct: 316 NALHQRLDKTRILMQDMVDLTTTIIDIYQLPPNHITAAFTDHIPTAVYWIVRCVL 352

[Close]

BLAST of CmoCh08G010800.1 vs. NCBI nr
Match: gi|659130475|ref|XP_008465192.1| (PREDICTED: uncharacterized protein LOC103502855 [Cucumis melo])

HSP 1 Score: 368.2 bits (944), Expect = 1.2e-98
Identity = 180/258 (69.77%), Postives = 213/258 (82.56%), Query Frame = 1


Query: 8   RPKISVVPLALALMQKTDK-EQTNLKHLSDDVIMNHLFTKHGDDETIKIDLNDYISFIEN 67
           RPK S   LALAL Q+ DK E+ +LKHLSDD I N +FT + D ET+KID++ YI FIE+
Sbjct: 5   RPKTSATALALALPQEIDKEEEKSLKHLSDDFITNRIFTINSDAETMKIDIDSYILFIES 64

Query: 68  VIKSSDQISAASHWAQGSKVHVELSDDSFTYLSSIEPPVCTLHDISKQMGCKAAGIDIAH 127
           VIKSSD+I+ ASHWA+GSK H EL+D++  Y + I+PP+CTLH IS +M CK  G + AH
Sbjct: 65  VIKSSDKIAVASHWAKGSKGHFELADETLKYPTQIDPPICTLHQISTEMICKDPGAETAH 124

Query: 128 KTTLDILSKLTKYSWEAKAVLIFAAFAMNYGALWHLDNYSRSDPLAKSLAMIKRVGSLRK 187
           +TTLDIL KL KYSW+AKAVLIF AFA  YG LWHLDNYS SD LAKSLA IKRV  LRK
Sbjct: 125 QTTLDILQKLAKYSWDAKAVLIFTAFATTYGVLWHLDNYSHSDTLAKSLATIKRVALLRK 184

Query: 188 ELDSVQYGQVFFGPNSLIYSCLKAIKYMNEFKNLSKYDIKEVPELSAALRRIPLVSYWIV 247
           ELDSV+YGQVFF PNS+IY+C+KAIKY+NEF+NLSKYD K+VPELSAALR+IPLVSYWI+
Sbjct: 185 ELDSVKYGQVFFNPNSMIYNCMKAIKYINEFRNLSKYDTKDVPELSAALRQIPLVSYWII 244

Query: 248 HALVASSIDLHCYLSGTE 265
           H LVASSI+LHCYLSG +
Sbjct: 245 HTLVASSIELHCYLSGVQ 262

[Close]

BLAST of CmoCh08G010800.1 vs. NCBI nr
Match: gi|449465384|ref|XP_004150408.1| (PREDICTED: uncharacterized protein LOC101217310 [Cucumis sativus])

HSP 1 Score: 363.2 bits (931), Expect = 3.8e-97
Identity = 178/258 (68.99%), Postives = 214/258 (82.95%), Query Frame = 1


Query: 8   RPKISVVPLALALMQKTDKEQT-NLKHLSDDVIMNHLFTKHGDDETIKIDLNDYISFIEN 67
           RPK S   LALAL Q+ +KE+  NLKHLSDDVI N +FT + DDET+KID++ YI FIE+
Sbjct: 5   RPKTSATALALALPQEINKEEEKNLKHLSDDVITNRIFTINSDDETMKIDIDSYILFIES 64

Query: 68  VIKSSDQISAASHWAQGSKVHVELSDDSFTYLSSIEPPVCTLHDISKQMGCKAAGIDIAH 127
           VIKSSD+I+ ASHWA+GSK +  L+D+S  Y + I+PP+CTLH IS +M CK  G++ A 
Sbjct: 65  VIKSSDKIAVASHWAKGSKGNFVLADESLKYPTQIDPPICTLHQISTEMTCKDPGVETAD 124

Query: 128 KTTLDILSKLTKYSWEAKAVLIFAAFAMNYGALWHLDNYSRSDPLAKSLAMIKRVGSLRK 187
           +TTL+IL KLT+YSW+AKAVLIF AFA NYG LWHLDNYS SD LAKSLA IKRV  LRK
Sbjct: 125 QTTLNILRKLTRYSWDAKAVLIFTAFATNYGVLWHLDNYSHSDTLAKSLATIKRVSLLRK 184

Query: 188 ELDSVQYGQVFFGPNSLIYSCLKAIKYMNEFKNLSKYDIKEVPELSAALRRIPLVSYWIV 247
           ELDSV+YGQVFF  NS+IY+C+KAIKY+NEF+ LSKYD K+VPELSAALR+IPLVSYWI+
Sbjct: 185 ELDSVKYGQVFFNQNSMIYNCMKAIKYINEFRTLSKYDTKDVPELSAALRQIPLVSYWII 244

Query: 248 HALVASSIDLHCYLSGTE 265
           H LVASSI+LHCYLSG +
Sbjct: 245 HTLVASSIELHCYLSGVQ 262

[Close]

BLAST of CmoCh08G010800.1 vs. NCBI nr
Match: gi|307136252|gb|ADN34084.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 276.9 bits (707), Expect = 3.6e-71
Identity = 133/241 (55.19%), Postives = 179/241 (74.27%), Query Frame = 1


Query: 24  TDKEQTNLKHLSDDVIMNHLFTKHGDDETIKIDLNDYISFIENVIKSSDQISAASHWAQG 83
           T KE+ + +H SD+V+  H++ KH DD+T KIDL+ YIS IE++I ++D+I+   H  +G
Sbjct: 24  TPKEELSTRHYSDEVVTGHIYAKHRDDDTTKIDLHSYISVIESIITTADRITDTVH--RG 83

Query: 84  SKVHVELSDDSFTYLSSIEPPVCTLHDISKQMGCKAAGIDIAHKTTLDILSKLTKYSWEA 143
           S+  +  S+DS    + IEPP+CTLH IS ++ CKA GI+ AH+TT++I   L  Y WEA
Sbjct: 84  SEGRLVYSNDSLASTAVIEPPLCTLHHISSELSCKAPGIEKAHETTIEIFEILANYPWEA 143

Query: 144 KAVLIFAAFAMNYGALWHLDNYSRSDPLAKSLAMIKRVGSLRKELDSVQYGQVFFGPNSL 203
           KA L   AFA +YG LWHL +YS++DPLAKSLA+IK+VG+L+K LDS++Y QV   P SL
Sbjct: 144 KAALTLLAFATDYGDLWHLYHYSQADPLAKSLAIIKKVGTLKKHLDSLRYRQVLLNPKSL 203

Query: 204 IYSCLKAIKYMNEFKNLSKYDIKEVPELSAALRRIPLVSYWIVHALVASSIDLHCYLSGT 263
           I SCL+A+KYM+E K  SKYD KE+PEL AALR IPLV+YW++H +VAS I+L  YLS T
Sbjct: 204 IQSCLQALKYMSEIKEFSKYDAKELPELPAALRLIPLVTYWVIHTIVASKIELSTYLSET 262

Query: 264 E 265
           E
Sbjct: 264 E 262

[Close]

BLAST of CmoCh08G010800.1 vs. NCBI nr
Match: gi|659130458|ref|XP_008465183.1| (PREDICTED: uncharacterized protein LOC103502846 [Cucumis melo])

HSP 1 Score: 276.9 bits (707), Expect = 3.6e-71
Identity = 133/241 (55.19%), Postives = 179/241 (74.27%), Query Frame = 1


Query: 24  TDKEQTNLKHLSDDVIMNHLFTKHGDDETIKIDLNDYISFIENVIKSSDQISAASHWAQG 83
           T KE+ + +H SD+V+  H++ KH DD+T KIDL+ YIS IE++I ++D+I+   H  +G
Sbjct: 24  TPKEELSTRHYSDEVVTGHIYAKHRDDDTTKIDLHSYISVIESIITTADRITDTVH--RG 83

Query: 84  SKVHVELSDDSFTYLSSIEPPVCTLHDISKQMGCKAAGIDIAHKTTLDILSKLTKYSWEA 143
           S+  +  S+DS    + IEPP+CTLH IS ++ CKA GI+ AH+TT++I   L  Y WEA
Sbjct: 84  SEGRLVYSNDSLASTAVIEPPLCTLHHISSELSCKAPGIEKAHETTIEIFEILANYPWEA 143

Query: 144 KAVLIFAAFAMNYGALWHLDNYSRSDPLAKSLAMIKRVGSLRKELDSVQYGQVFFGPNSL 203
           KA L   AFA +YG LWHL +YS++DPLAKSLA+IK+VG+L+K LDS++Y QV   P SL
Sbjct: 144 KAALTLLAFATDYGDLWHLYHYSQADPLAKSLAIIKKVGTLKKHLDSLRYRQVLLNPKSL 203

Query: 204 IYSCLKAIKYMNEFKNLSKYDIKEVPELSAALRRIPLVSYWIVHALVASSIDLHCYLSGT 263
           I SCL+A+KYM+E K  SKYD KE+PEL AALR IPLV+YW++H +VAS I+L  YLS T
Sbjct: 204 IQSCLQALKYMSEIKEFSKYDAKELPELPAALRLIPLVTYWVIHTIVASKIELSTYLSET 262

Query: 264 E 265
           E
Sbjct: 264 E 262

[Close]

BLAST of CmoCh08G010800.1 vs. NCBI nr
Match: gi|778668884|ref|XP_004150431.2| (PREDICTED: uncharacterized protein LOC101203597 [Cucumis sativus])

HSP 1 Score: 276.2 bits (705), Expect = 6.1e-71
Identity = 132/241 (54.77%), Postives = 180/241 (74.69%), Query Frame = 1


Query: 24  TDKEQTNLKHLSDDVIMNHLFTKHGDDETIKIDLNDYISFIENVIKSSDQISAASHWAQG 83
           T KE+ + +H SD+V+ +H++ KH DD+T KIDL++YIS IE++I ++D+I+   H  +G
Sbjct: 24  TTKEELSTRHYSDEVVTSHIYAKHRDDDTAKIDLHNYISVIESIITTADRITDTVH--RG 83

Query: 84  SKVHVELSDDSFTYLSSIEPPVCTLHDISKQMGCKAAGIDIAHKTTLDILSKLTKYSWEA 143
           S+  +  S+DS    + IEPP+CTLH IS ++ CK  GI+ AH+TT++I   L  Y WEA
Sbjct: 84  SEGRLVYSNDSLASAAVIEPPLCTLHRISSELSCKPPGIEKAHETTIEIFEILANYPWEA 143

Query: 144 KAVLIFAAFAMNYGALWHLDNYSRSDPLAKSLAMIKRVGSLRKELDSVQYGQVFFGPNSL 203
           KA L   AFA +YG LWHL +YS++DPLAKSLA+IK+V +L+K LDS++Y QV   P SL
Sbjct: 144 KAALTLLAFAADYGDLWHLYHYSQADPLAKSLAIIKKVATLKKHLDSLRYRQVLLNPKSL 203

Query: 204 IYSCLKAIKYMNEFKNLSKYDIKEVPELSAALRRIPLVSYWIVHALVASSIDLHCYLSGT 263
           I SCL+AIKYMNE K  +KYD+KE+PEL AALR IPLV+YW++H +VAS I+L  YLS T
Sbjct: 204 IQSCLQAIKYMNEIKEFAKYDVKELPELPAALRLIPLVTYWVIHTIVASKIELSTYLSET 262

Query: 264 E 265
           E
Sbjct: 264 E 262

The following BLAST results are available for this feature:

BLAST of CmoCh08G010800.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SEOB_ARATH	3.6e-15	26.43	Protein SIEVE ELEMENT OCCLUSION B OS=Arabidopsis thaliana GN=SEOB PE=1 SV=1	[more]
SEOA_ARATH	2.3e-09	27.23	Protein SIEVE ELEMENT OCCLUSION A OS=Arabidopsis thaliana GN=SEOA PE=1 SV=1	[more]

BLAST of CmoCh08G010800.1 vs. TrEMBL


Match Name	E-value	Identity	Description
E5GC85_CUCME	2.5e-71	55.19	Putative uncharacterized protein (Fragment) OS=Cucumis melo subsp. melo PE=4 SV=...	[more]
A0A0A0LIA4_CUCSA	4.2e-71	54.77	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G199900 PE=4 SV=1	[more]
A0A0A0LIL1_CUCSA	7.2e-71	54.51	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G196890 PE=4 SV=1	[more]
A0A0A0LNQ7_CUCSA	1.2e-70	51.55	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G193350 PE=4 SV=1	[more]
I6V4B3_CUCMA	2.3e-69	55.79	Sieve element occlusion protein 1 OS=Cucurbita maxima GN=SEO1 PE=2 SV=1	[more]

BLAST of CmoCh08G010800.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G01680.1	2.0e-16	26.43	Mediator complex subunit Med28 (InterPro:IPR021640)	[more]
AT3G01670.1	1.3e-10	27.23	unknown protein	[more]

BLAST of CmoCh08G010800.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659130475\|ref\|XP_008465192.1\|	1.2e-98	69.77	PREDICTED: uncharacterized protein LOC103502855 [Cucumis melo]	[more]
gi\|449465384\|ref\|XP_004150408.1\|	3.8e-97	68.99	PREDICTED: uncharacterized protein LOC101217310 [Cucumis sativus]	[more]
gi\|307136252\|gb\|ADN34084.1\|	3.6e-71	55.19	hypothetical protein [Cucumis melo subsp. melo]	[more]
gi\|659130458\|ref\|XP_008465183.1\|	3.6e-71	55.19	PREDICTED: uncharacterized protein LOC103502846 [Cucumis melo]	[more]
gi\|778668884\|ref\|XP_004150431.2\|	6.1e-71	54.77	PREDICTED: uncharacterized protein LOC101203597 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR027942	SEO_N

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh08G010800	CmoCh08G010800	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh08G010800.1	CmoCh08G010800.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh08G010800.1.CDS.3	CmoCh08G010800.1.CDS.3	CDS
CmoCh08G010800.1.CDS.2	CmoCh08G010800.1.CDS.2	CDS
CmoCh08G010800.1.CDS.1	CmoCh08G010800.1.CDS.1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh08G010800.1.five_prime_UTR.1	CmoCh08G010800.1.five_prime_UTR.1	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh08G010800.1.exon.3	CmoCh08G010800.1.exon.3	exon
CmoCh08G010800.1.exon.2	CmoCh08G010800.1.exon.2	exon
CmoCh08G010800.1.exon.1	CmoCh08G010800.1.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027942	Sieve element occlusion, N-terminal	PFAM	PF14576	SEO_N	coord: 35..255 score: 1.3
None	No IPR available	PANTHER	PTHR33232	FAMILY NOT NAMED	coord: 8..252 score: 1.1
None	No IPR available	PANTHER	PTHR33232:SF5	SUBFAMILY NOT NAMED	coord: 8..252 score: 1.1