CmoCh08G010470.1 (mRNA) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh08G010470.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Unknown protein
Location	Cmo_Chr08 : 6765338 .. 6765943 (-)
Sequence length	606

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTAGTGGCTGGAACAGAGTGGCTTTGTTCTCTTTGTTATGTTTTCATGTTGTTGTGTCCAGTGTGCTTGCTAGGGGAGTGGCTAAACCGAGGAATGAGGAGGAAGAGAAGTTTCTGTTCTTTGGCAAGGGTGGTGGACTAGGAGGTGGATATGGTGGTGGCAGTGGTTGTGGAGGAGGAGGAGCTGGTGGTGGCAGTGGTTTTGGAGGTGGAGGAGCTGGTGGTGGCAGTGGTTTTGGAGGTGGAAGTGGTGGCGGCGGCGGTGGTATTGGAGGTGGAAGTGGAGGAGGCTTTGGAGGGGGTCATGGGATTGGTGGTGGTGTAGGAGGTGGAGGTGGAGATGGAGATGGAGGTGGAGATGGAGATGGAGATGGAGGCCTTGGAGGTGGTGATGGTGGCGGGTTCGGTAATGGTGGTGGTTATGGCGGAGGATTTGGTAAGGGTGGAGGTCTTGGAGGTGGAGGAGGGTTCGGTAAGGGCGGTGGATACGGTGGTGGGCTTGGAAAGGGTGGTGGAGGACTTGGTGGTGATGGTGGTGGTGGAGGTGGAGGTGGAGGTGGCTCGGGCGGTGGATTTGGCGGCGGCGGAAACGGACACCACTAA

mRNA sequence

ATGGGTAGTGGCTGGAACAGAGTGGCTTTGTTCTCTTTGTTATGTTTTCATGTTGTTGTGTCCAGTGTGCTTGCTAGGGGAGTGGCTAAACCGAGGAATGAGGAGGAAGAGAAGTTTCTGTTCTTTGGCAAGGGTGGTGGACTAGGAGGTGGATATGGTGGTGGCAGTGGTTGTGGAGGAGGAGGAGCTGGTGGTGGCAGTGGTTTTGGAGGTGGAGGAGCTGGTGGTGGCAGTGGTTTTGGAGGTGGAAGTGGTGGCGGCGGCGGTGGTATTGGAGGTGGAAGTGGAGGAGGCTTTGGAGGGGGTCATGGGATTGGTGGTGGTGTAGGAGGTGGAGGTGGAGATGGAGATGGAGGTGGAGATGGAGATGGAGATGGAGGCCTTGGAGGTGGTGATGGTGGCGGGTTCGGTAATGGTGGTGGTTATGGCGGAGGATTTGGTAAGGGTGGAGGTCTTGGAGGTGGAGGAGGGTTCGGTAAGGGCGGTGGATACGGTGGTGGGCTTGGAAAGGGTGGTGGAGGACTTGGTGGTGATGGTGGTGGTGGAGGTGGAGGTGGAGGTGGCTCGGGCGGTGGATTTGGCGGCGGCGGAAACGGACACCACTAA

Coding sequence (CDS)

ATGGGTAGTGGCTGGAACAGAGTGGCTTTGTTCTCTTTGTTATGTTTTCATGTTGTTGTGTCCAGTGTGCTTGCTAGGGGAGTGGCTAAACCGAGGAATGAGGAGGAAGAGAAGTTTCTGTTCTTTGGCAAGGGTGGTGGACTAGGAGGTGGATATGGTGGTGGCAGTGGTTGTGGAGGAGGAGGAGCTGGTGGTGGCAGTGGTTTTGGAGGTGGAGGAGCTGGTGGTGGCAGTGGTTTTGGAGGTGGAAGTGGTGGCGGCGGCGGTGGTATTGGAGGTGGAAGTGGAGGAGGCTTTGGAGGGGGTCATGGGATTGGTGGTGGTGTAGGAGGTGGAGGTGGAGATGGAGATGGAGGTGGAGATGGAGATGGAGATGGAGGCCTTGGAGGTGGTGATGGTGGCGGGTTCGGTAATGGTGGTGGTTATGGCGGAGGATTTGGTAAGGGTGGAGGTCTTGGAGGTGGAGGAGGGTTCGGTAAGGGCGGTGGATACGGTGGTGGGCTTGGAAAGGGTGGTGGAGGACTTGGTGGTGATGGTGGTGGTGGAGGTGGAGGTGGAGGTGGCTCGGGCGGTGGATTTGGCGGCGGCGGAAACGGACACCACTAA

Homology

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BLAST of CmoCh08G010470.1 vs. TrEMBL
Match: A0A0A0LIH7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G173020 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 6.2e-06
Identity = 142/206 (68.93%), Postives = 151/206 (73.30%), Query Frame = 1


Query: 1   MGSGWNRVALFSLLCFHVVVSSVLARGVAKPRNEEEEKFLFFGKGGGLGGGYGGGSGCGG 60
           M SGW RVAL SLLCF V+V +V+A+      + +EEKFLFFGK GGLG G+GGGSG GG
Sbjct: 1   MASGWKRVALLSLLCFQVIVYNVVAK-----EDGKEEKFLFFGKSGGLGSGFGGGSGFGG 60

Query: 61  GGAGGGSGFGGGGAGGGSGFGGGSGGGGGGIGGGSGGGFGGGHGIGGGVGG--GGGDGDG 120
           GG GGG   GGGG GGG GFGGG G GG   G G GGGFG G G+GGGVGG  GGG G G
Sbjct: 61  GGGGGGG--GGGGGGGGGGFGGGVGFGG---GHGIGGGFGKGGGVGGGVGGGAGGGSGVG 120

Query: 121 GGDGDGDGGLGGGDGGGFGNGGGY----GGGFGKGGGLGG--GGGFGKGGGYGGGLGKGG 180
           GG G G GGLGGG GGGFG GGG     GGGFGKGGGLGG  GGGFGKGGG GGG+GKGG
Sbjct: 121 GGIGKG-GGLGGGSGGGFGKGGGLGGGAGGGFGKGGGLGGGAGGGFGKGGGLGGGIGKGG 180

Query: 181 G-GLGGDGGGGGGGGGGSGGGFGGGG 198
           G G GG  GGG G GGG GGGFG GG
Sbjct: 181 GLGGGGGAGGGFGKGGGVGGGFGKGG 195

[Close]

BLAST of CmoCh08G010470.1 vs. NCBI nr
Match: gi|659121438|ref|XP_008460660.1| (PREDICTED: glycine-rich cell wall structural protein 1 [Cucumis melo])

HSP 1 Score: 72.8 bits (177), Expect = 7.8e-10
Identity = 142/217 (65.44%), Postives = 149/217 (68.66%), Query Frame = 1


Query: 1   MGSGWNRVALFSLLCFHVVVSSVLARGVAKPRNEEEEKFLFFGKGGGLGGGYGGGSGCGG 60
           M SGW RVAL SLLCFHV+V +V+A+   K     EEKFLFFGK GGLGGG+GGGSG GG
Sbjct: 22  MASGWKRVALLSLLCFHVLVYNVVAKEDGK-----EEKFLFFGKSGGLGGGFGGGSGFGG 81

Query: 61  GGAGGGSGFGGGGAGGGSGFGGGSG-----------GGGGGIGGGSGGGFGGGHGIGGGV 120
           G  GGG G GGGG GGG GFGGG G           G GGG+GGG GGG GGG G GGG+
Sbjct: 82  GFGGGGGGGGGGGGGGGGGFGGGGGYGGGHGIGGGFGKGGGVGGGLGGGAGGGFGKGGGL 141

Query: 121 GGGGGDGDGGGDGDGDGGLGGGDGGGFGNGGGYGGGFGKGGGLGGG--GGFGKGGGYGGG 180
           GGG G G         GGLGGG GGGFG GGG GGG GKGGG GGG  GGFGKGGG GGG
Sbjct: 142 GGGIGKG---------GGLGGGAGGGFGKGGGLGGGIGKGGGFGGGAGGGFGKGGGVGGG 201

Query: 181 LGKGGG-------GLGGDGGGGGGGGGGSGGGFGGGG 198
            GKGGG       G GG GGGGGGGGGG GGGFG GG
Sbjct: 202 FGKGGGFGGGVGGGAGGGGGGGGGGGGGGGGGFGKGG 224

[Close]

BLAST of CmoCh08G010470.1 vs. NCBI nr
Match: gi|700206464|gb|KGN61583.1| (hypothetical protein Csa_2G173020 [Cucumis sativus])

HSP 1 Score: 60.1 bits (144), Expect = 5.2e-06
Identity = 143/240 (59.58%), Postives = 151/240 (62.92%), Query Frame = 1


Query: 1   MGSGWNRVALFSLLCFHVVVSSVLARGVAKPRNEEEEKFLFFGKGGGLGGGYGGGSGCGG 60
           M SGW RVAL SLLCF V+V +V+A+   K     EEKFLFFGK GGLG G+GGGSG GG
Sbjct: 1   MASGWKRVALLSLLCFQVIVYNVVAKEDGK-----EEKFLFFGKSGGLGSGFGGGSGFGG 60

Query: 61  GGAGGGSGFGG----------------------------------GGAGGGSGFGGGSGG 120
           GG GGG G GG                                  GGAGGGSG GGG  G
Sbjct: 61  GGGGGGGGGGGGGGGGGFGGGVGFGGGHGIGGGFGKGGGVGGGVGGGAGGGSGVGGGI-G 120

Query: 121 GGGGIGGGSGGGFGGGHGIGGGVGGGGGDGDGGGDGDGDGGLGGGDGGGFGNGGGYGGGF 180
            GGG+GGGSGGGFG G G+GGG GGG G G         GGLGGG GGGFG GGG GGG 
Sbjct: 121 KGGGLGGGSGGGFGKGGGLGGGAGGGFGKG---------GGLGGGAGGGFGKGGGLGGGI 180

Query: 181 GKGGGLGG----GGGFGKGGGYGGGLGKG---GGGLGGDGGGGGGGGGGSGGGFGGGGNG 200
           GKGGGLGG    GGGFGKGGG GGG GKG   GGG+GG  GGGGGGGGG GGG GG GNG
Sbjct: 181 GKGGGLGGGGGAGGGFGKGGGVGGGFGKGGGFGGGVGGGAGGGGGGGGGGGGGGGGFGNG 225

The following BLAST results are available for this feature:

BLAST of CmoCh08G010470.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh08G010470.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LIH7_CUCSA	6.2e-06	68.93	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G173020 PE=4 SV=1	[more]

BLAST of CmoCh08G010470.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh08G010470.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659121438\|ref\|XP_008460660.1\|	7.8e-10	65.44	PREDICTED: glycine-rich cell wall structural protein 1 [Cucumis melo]	[more]
gi\|700206464\|gb\|KGN61583.1\|	5.2e-06	59.58	hypothetical protein Csa_2G173020 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh08G010470	CmoCh08G010470	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh08G010470.1	CmoCh08G010470.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh08G010470.1.CDS.1	CmoCh08G010470.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh08G010470.1.exon.1	CmoCh08G010470.1.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR39110	FAMILY NOT NAMED	coord: 1..196 score: 2.5