CmoCh08G010470 (gene) Cucurbita moschata (Rifu)

NameCmoCh08G010470
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr08 : 6765338 .. 6765943 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTAGTGGCTGGAACAGAGTGGCTTTGTTCTCTTTGTTATGTTTTCATGTTGTTGTGTCCAGTGTGCTTGCTAGGGGAGTGGCTAAACCGAGGAATGAGGAGGAAGAGAAGTTTCTGTTCTTTGGCAAGGGTGGTGGACTAGGAGGTGGATATGGTGGTGGCAGTGGTTGTGGAGGAGGAGGAGCTGGTGGTGGCAGTGGTTTTGGAGGTGGAGGAGCTGGTGGTGGCAGTGGTTTTGGAGGTGGAAGTGGTGGCGGCGGCGGTGGTATTGGAGGTGGAAGTGGAGGAGGCTTTGGAGGGGGTCATGGGATTGGTGGTGGTGTAGGAGGTGGAGGTGGAGATGGAGATGGAGGTGGAGATGGAGATGGAGATGGAGGCCTTGGAGGTGGTGATGGTGGCGGGTTCGGTAATGGTGGTGGTTATGGCGGAGGATTTGGTAAGGGTGGAGGTCTTGGAGGTGGAGGAGGGTTCGGTAAGGGCGGTGGATACGGTGGTGGGCTTGGAAAGGGTGGTGGAGGACTTGGTGGTGATGGTGGTGGTGGAGGTGGAGGTGGAGGTGGCTCGGGCGGTGGATTTGGCGGCGGCGGAAACGGACACCACTAA

mRNA sequence

ATGGGTAGTGGCTGGAACAGAGTGGCTTTGTTCTCTTTGTTATGTTTTCATGTTGTTGTGTCCAGTGTGCTTGCTAGGGGAGTGGCTAAACCGAGGAATGAGGAGGAAGAGAAGTTTCTGTTCTTTGGCAAGGGTGGTGGACTAGGAGGTGGATATGGTGGTGGCAGTGGTTGTGGAGGAGGAGGAGCTGGTGGTGGCAGTGGTTTTGGAGGTGGAGGAGCTGGTGGTGGCAGTGGTTTTGGAGGTGGAAGTGGTGGCGGCGGCGGTGGTATTGGAGGTGGAAGTGGAGGAGGCTTTGGAGGGGGTCATGGGATTGGTGGTGGTGTAGGAGGTGGAGGTGGAGATGGAGATGGAGGTGGAGATGGAGATGGAGATGGAGGCCTTGGAGGTGGTGATGGTGGCGGGTTCGGTAATGGTGGTGGTTATGGCGGAGGATTTGGTAAGGGTGGAGGTCTTGGAGGTGGAGGAGGGTTCGGTAAGGGCGGTGGATACGGTGGTGGGCTTGGAAAGGGTGGTGGAGGACTTGGTGGTGATGGTGGTGGTGGAGGTGGAGGTGGAGGTGGCTCGGGCGGTGGATTTGGCGGCGGCGGAAACGGACACCACTAA

Coding sequence (CDS)

ATGGGTAGTGGCTGGAACAGAGTGGCTTTGTTCTCTTTGTTATGTTTTCATGTTGTTGTGTCCAGTGTGCTTGCTAGGGGAGTGGCTAAACCGAGGAATGAGGAGGAAGAGAAGTTTCTGTTCTTTGGCAAGGGTGGTGGACTAGGAGGTGGATATGGTGGTGGCAGTGGTTGTGGAGGAGGAGGAGCTGGTGGTGGCAGTGGTTTTGGAGGTGGAGGAGCTGGTGGTGGCAGTGGTTTTGGAGGTGGAAGTGGTGGCGGCGGCGGTGGTATTGGAGGTGGAAGTGGAGGAGGCTTTGGAGGGGGTCATGGGATTGGTGGTGGTGTAGGAGGTGGAGGTGGAGATGGAGATGGAGGTGGAGATGGAGATGGAGATGGAGGCCTTGGAGGTGGTGATGGTGGCGGGTTCGGTAATGGTGGTGGTTATGGCGGAGGATTTGGTAAGGGTGGAGGTCTTGGAGGTGGAGGAGGGTTCGGTAAGGGCGGTGGATACGGTGGTGGGCTTGGAAAGGGTGGTGGAGGACTTGGTGGTGATGGTGGTGGTGGAGGTGGAGGTGGAGGTGGCTCGGGCGGTGGATTTGGCGGCGGCGGAAACGGACACCACTAA
BLAST of CmoCh08G010470 vs. TrEMBL
Match: A0A0A0LIH7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G173020 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 6.2e-06
Identity = 142/206 (68.93%), Postives = 151/206 (73.30%), Query Frame = 1

Query: 1   MGSGWNRVALFSLLCFHVVVSSVLARGVAKPRNEEEEKFLFFGKGGGLGGGYGGGSGCGG 60
           M SGW RVAL SLLCF V+V +V+A+      + +EEKFLFFGK GGLG G+GGGSG GG
Sbjct: 1   MASGWKRVALLSLLCFQVIVYNVVAK-----EDGKEEKFLFFGKSGGLGSGFGGGSGFGG 60

Query: 61  GGAGGGSGFGGGGAGGGSGFGGGSGGGGGGIGGGSGGGFGGGHGIGGGVGG--GGGDGDG 120
           GG GGG   GGGG GGG GFGGG G GG   G G GGGFG G G+GGGVGG  GGG G G
Sbjct: 61  GGGGGGG--GGGGGGGGGGFGGGVGFGG---GHGIGGGFGKGGGVGGGVGGGAGGGSGVG 120

Query: 121 GGDGDGDGGLGGGDGGGFGNGGGY----GGGFGKGGGLGG--GGGFGKGGGYGGGLGKGG 180
           GG G G GGLGGG GGGFG GGG     GGGFGKGGGLGG  GGGFGKGGG GGG+GKGG
Sbjct: 121 GGIGKG-GGLGGGSGGGFGKGGGLGGGAGGGFGKGGGLGGGAGGGFGKGGGLGGGIGKGG 180

Query: 181 G-GLGGDGGGGGGGGGGSGGGFGGGG 198
           G G GG  GGG G GGG GGGFG GG
Sbjct: 181 GLGGGGGAGGGFGKGGGVGGGFGKGG 195

BLAST of CmoCh08G010470 vs. NCBI nr
Match: gi|659121438|ref|XP_008460660.1| (PREDICTED: glycine-rich cell wall structural protein 1 [Cucumis melo])

HSP 1 Score: 72.8 bits (177), Expect = 7.8e-10
Identity = 142/217 (65.44%), Postives = 149/217 (68.66%), Query Frame = 1

Query: 1   MGSGWNRVALFSLLCFHVVVSSVLARGVAKPRNEEEEKFLFFGKGGGLGGGYGGGSGCGG 60
           M SGW RVAL SLLCFHV+V +V+A+   K     EEKFLFFGK GGLGGG+GGGSG GG
Sbjct: 22  MASGWKRVALLSLLCFHVLVYNVVAKEDGK-----EEKFLFFGKSGGLGGGFGGGSGFGG 81

Query: 61  GGAGGGSGFGGGGAGGGSGFGGGSG-----------GGGGGIGGGSGGGFGGGHGIGGGV 120
           G  GGG G GGGG GGG GFGGG G           G GGG+GGG GGG GGG G GGG+
Sbjct: 82  GFGGGGGGGGGGGGGGGGGFGGGGGYGGGHGIGGGFGKGGGVGGGLGGGAGGGFGKGGGL 141

Query: 121 GGGGGDGDGGGDGDGDGGLGGGDGGGFGNGGGYGGGFGKGGGLGGG--GGFGKGGGYGGG 180
           GGG G G         GGLGGG GGGFG GGG GGG GKGGG GGG  GGFGKGGG GGG
Sbjct: 142 GGGIGKG---------GGLGGGAGGGFGKGGGLGGGIGKGGGFGGGAGGGFGKGGGVGGG 201

Query: 181 LGKGGG-------GLGGDGGGGGGGGGGSGGGFGGGG 198
            GKGGG       G GG GGGGGGGGGG GGGFG GG
Sbjct: 202 FGKGGGFGGGVGGGAGGGGGGGGGGGGGGGGGFGKGG 224

BLAST of CmoCh08G010470 vs. NCBI nr
Match: gi|700206464|gb|KGN61583.1| (hypothetical protein Csa_2G173020 [Cucumis sativus])

HSP 1 Score: 60.1 bits (144), Expect = 5.2e-06
Identity = 143/240 (59.58%), Postives = 151/240 (62.92%), Query Frame = 1

Query: 1   MGSGWNRVALFSLLCFHVVVSSVLARGVAKPRNEEEEKFLFFGKGGGLGGGYGGGSGCGG 60
           M SGW RVAL SLLCF V+V +V+A+   K     EEKFLFFGK GGLG G+GGGSG GG
Sbjct: 1   MASGWKRVALLSLLCFQVIVYNVVAKEDGK-----EEKFLFFGKSGGLGSGFGGGSGFGG 60

Query: 61  GGAGGGSGFGG----------------------------------GGAGGGSGFGGGSGG 120
           GG GGG G GG                                  GGAGGGSG GGG  G
Sbjct: 61  GGGGGGGGGGGGGGGGGFGGGVGFGGGHGIGGGFGKGGGVGGGVGGGAGGGSGVGGGI-G 120

Query: 121 GGGGIGGGSGGGFGGGHGIGGGVGGGGGDGDGGGDGDGDGGLGGGDGGGFGNGGGYGGGF 180
            GGG+GGGSGGGFG G G+GGG GGG G G         GGLGGG GGGFG GGG GGG 
Sbjct: 121 KGGGLGGGSGGGFGKGGGLGGGAGGGFGKG---------GGLGGGAGGGFGKGGGLGGGI 180

Query: 181 GKGGGLGG----GGGFGKGGGYGGGLGKG---GGGLGGDGGGGGGGGGGSGGGFGGGGNG 200
           GKGGGLGG    GGGFGKGGG GGG GKG   GGG+GG  GGGGGGGGG GGG GG GNG
Sbjct: 181 GKGGGLGGGGGAGGGFGKGGGVGGGFGKGGGFGGGVGGGAGGGGGGGGGGGGGGGGFGNG 225

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LIH7_CUCSA6.2e-0668.93Uncharacterized protein OS=Cucumis sativus GN=Csa_2G173020 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
gi|659121438|ref|XP_008460660.1|7.8e-1065.44PREDICTED: glycine-rich cell wall structural protein 1 [Cucumis melo][more]
gi|700206464|gb|KGN61583.1|5.2e-0659.58hypothetical protein Csa_2G173020 [Cucumis sativus][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh08G010470.1CmoCh08G010470.1mRNA


Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR39110FAMILY NOT NAMEDcoord: 1..196
score: 2.5

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh08G010470Cucurbita moschata (Rifu)cmocmoB233
CmoCh08G010470Cucurbita moschata (Rifu)cmocmoB310
CmoCh08G010470Cucurbita moschata (Rifu)cmocmoB402
CmoCh08G010470Cucurbita moschata (Rifu)cmocmoB484
CmoCh08G010470Cucurbita moschata (Rifu)cmocmoB446
CmoCh08G010470Cucumber (Gy14) v1cgycmoB0721
CmoCh08G010470Cucumber (Gy14) v1cgycmoB1059
CmoCh08G010470Cucurbita maxima (Rimu)cmacmoB279
CmoCh08G010470Cucurbita maxima (Rimu)cmacmoB365
CmoCh08G010470Cucurbita maxima (Rimu)cmacmoB537
CmoCh08G010470Cucurbita maxima (Rimu)cmacmoB631
CmoCh08G010470Cucurbita maxima (Rimu)cmacmoB837
CmoCh08G010470Cucurbita maxima (Rimu)cmacmoB912
CmoCh08G010470Wild cucumber (PI 183967)cmocpiB879
CmoCh08G010470Wild cucumber (PI 183967)cmocpiB883
CmoCh08G010470Cucumber (Chinese Long) v2cmocuB868
CmoCh08G010470Cucumber (Chinese Long) v2cmocuB872
CmoCh08G010470Melon (DHL92) v3.5.1cmomeB832
CmoCh08G010470Melon (DHL92) v3.5.1cmomeB826
CmoCh08G010470Melon (DHL92) v3.5.1cmomeB828
CmoCh08G010470Watermelon (Charleston Gray)cmowcgB792
CmoCh08G010470Watermelon (Charleston Gray)cmowcgB799
CmoCh08G010470Watermelon (Charleston Gray)cmowcgB808
CmoCh08G010470Watermelon (97103) v1cmowmB853
CmoCh08G010470Watermelon (97103) v1cmowmB856
CmoCh08G010470Watermelon (97103) v1cmowmB867
CmoCh08G010470Cucurbita pepo (Zucchini)cmocpeB833
CmoCh08G010470Cucurbita pepo (Zucchini)cmocpeB849
CmoCh08G010470Cucurbita pepo (Zucchini)cmocpeB853
CmoCh08G010470Cucurbita pepo (Zucchini)cmocpeB862
CmoCh08G010470Cucurbita pepo (Zucchini)cmocpeB865
CmoCh08G010470Cucurbita pepo (Zucchini)cmocpeB866
CmoCh08G010470Bottle gourd (USVL1VR-Ls)cmolsiB797
CmoCh08G010470Bottle gourd (USVL1VR-Ls)cmolsiB823
CmoCh08G010470Bottle gourd (USVL1VR-Ls)cmolsiB824
CmoCh08G010470Cucumber (Gy14) v2cgybcmoB254
CmoCh08G010470Cucumber (Gy14) v2cgybcmoB421
CmoCh08G010470Melon (DHL92) v3.6.1cmomedB933
CmoCh08G010470Melon (DHL92) v3.6.1cmomedB935
CmoCh08G010470Melon (DHL92) v3.6.1cmomedB940
CmoCh08G010470Silver-seed gourdcarcmoB0326
CmoCh08G010470Silver-seed gourdcarcmoB0333
CmoCh08G010470Silver-seed gourdcarcmoB1025
CmoCh08G010470Silver-seed gourdcarcmoB1061
CmoCh08G010470Silver-seed gourdcarcmoB1289
CmoCh08G010470Silver-seed gourdcarcmoB1452
CmoCh08G010470Cucumber (Chinese Long) v3cmocucB1026
CmoCh08G010470Cucumber (Chinese Long) v3cmocucB1032
CmoCh08G010470Watermelon (97103) v2cmowmbB896
CmoCh08G010470Watermelon (97103) v2cmowmbB886
CmoCh08G010470Watermelon (97103) v2cmowmbB903
CmoCh08G010470Wax gourdcmowgoB1084
CmoCh08G010470Wax gourdcmowgoB1106
CmoCh08G010470Wax gourdcmowgoB1111