CmoCh08G008450.1 (mRNA) Cucurbita moschata (Rifu)
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CTGTGGCATTTGAATGTTGATGATGGGCGCGGCGATTCCTTTTACTTGCAATCAGCACTTGTGGATTTCTACCATTTCTCGTCATTCGCTCCAAAGTAGCCCTGATTTTCGAATCTCTTGCCAATCGAAGGTAATTTTTGAAATCCGTTTTGAATGTCCTTATGTTATGTTTTAGAGAGAAAATGAATGAATTATAATGTACAGAGAGGAAGGAGGTATTGTCCAATGCTAGAAAGTTGTTTGGTGGAAGGAATTAGTTCCTGATATTTGGAGGTTTTCAGCGGAGAGGTATGGCGATCGGGTAGCATTACTGGATCCATATCATAATCATGCTTCCAAGATTACTTATAAACAGGTATCCATACCATAATCTTGTTAGTATTCCTCGTTTGCTTCTTCAGCATAGTCAGTGATTATGTTTTTGCTTCATTTTAGCAACGAAACACCATCTTGTTTTTTATATTACTTACTTTTCTTTTCTTTTTTTTCTTCATAAATTTAAATTTGCAGCTAGAACAAATTATCTTGAATTTCTGTGAAGGTCTTAGGGCCATTGGAATAAAGCCAGATGAAAAGATTGCACTCTTTTCTGATAATTCATGCCGATGACTTGTTGCCGATCAAGGTATGCGTTGATTGTATAAAATATTGTAGTTCATTTTGTTATATTTTAATAGTTTGGGTTCAGGTATTATGAGTATGGGAGCAATTAATGTTGTTAGAGGTTCAAGATCATCAAGTGAGGAGTTGTTGCAAATATACAATTGAAAGGTTTCTTAAATTGCTTCATAGGTTTTAACATAAACTATGTTTTGGTTTTAAATTTAAACTTTCACTGTGTAGCATTAGTTGTAGACAACCCTGAATTGTTCAATCGAATCATTGAAACATTCCGTTCGAAGGCATCCACGAGATGTATCATTCTTCTATGGGGCGAAAACTCAAGCCTGGCAGCTGAGGGACTGGACGGTATTGGACATCATGGATATGGGATGAGAGAGTCGTAAACTTATGCTTCATAGTAAGTTATATACATATGAAGCTATCAACTTGGATGATATTGCTACTCTTATCTATACAAGTAGCACAACTGGATACCCTAAAGCTGTCATGCTTACCCACAGAAATTTATTGCACCAGGTTTGTTTCACTACTCCTCTTTATTTCACCAAAGTATGATGTGTTCTAAGGCTGCTTGGTATGTCAAACATTTTCCAGATAAAGAATTTATGGGATGTTATACCTGCTAAAGTTGGGGATAAATTTCTAAGCATGCTTTCACCTTGGCATGCGTACGAACGGGCTTGTGAATATTTCATATTTACACTTGGAGTGGAGCAAACGTACACAACAACAAGAAAGTTAAAGGTATTTCAATTACACCAAATCTGGGAAATTAGAATTTTTTTTAAACTCCTCTGTATTTGAGTTGTCAGGATGATCTTCGTGATTATCAACCAGACTACTTGGTTTCTGTTCCATTGGTGTGATTATAGTTCCCAACAAGGGACAACTGTTGTCTGCTACATCCTATCTTAGCAATGAAACCTTGACAAACCTGATTTATAGTGAACTCAGAAAATGGTTAGACTTTTGTGATGTTCCTATGTTCATCATTAGCCATTGACTGTTCGTTCTTAGTCTTTTGTGAAGAAGGAAGGGTGGTTGATAGCAATATAATATGTTGGTTTCATGCAGGACTTCAGAGTGTTCATTTCAAATTAGACCAATCCTCATTGTCAATGAACCATTCACGGTATGAAATTCGTGAAAAAGATACTTCCAATTTGCAAATCTTTTAATTTACTTTTGAACACTTTGAATTGTAGATGGATAATGGGTTACTGAGCCCTACAATGAAAGTTCGAAGACACAACGTTACTGCTTATTACAAGAAGGAAACAGAGAACTTATTCAAGGCAATATAATGTGGTAAGGCAATATAACGTGGTTAATTAGTCTCTGGACTTGGACAAACATTTAGCACAAGCTATATATATAAATAACTTTATAATATGCTACATGTGATACAAGCCTTTATATGATATTCTAGGATTAGTCCATGAACGCAAGTACCAAGATACTATCCTAAG CTGTGGCATTTGAATGTTGATGATGGGCGCGGCGATTCCTTTTACTTGCAATCAGCACTTGTGGATTTCTACCATTTCTCGTCATTCGCTCCAAAGTAGCCCTGATTTTCGAATCTCTTGCCAATCGAAGAGAGGAAGGAGGTATTGTCCAATGCTAGAAACATTAGTTGTAGACAACCCTGAATTGTTCAATCGAATCATTGAAACATTCCGTTCGAAGGCATCCACGAGATGTATCATTCTTCTATGGGGCGAAAACTCAAGCCTGGCAGCTGAGGGACTGGACGCTATCAACTTGGATGATATTGCTACTCTTATCTATACAAGTAGCACAACTGGATACCCTAAAGCTGTCATGCTTACCCACAGAAATTTATTGCACCAGATAAAGAATTTATGGGATGTTATACCTGCTAAAGTTGGGGATAAATTTCTAAGCATGCTTTCACCTTGGCATGCGTACGAACGGGCTTGTGAATATTTCATATTTACACTTGGAGTGGAGCAAACACTACTTGGTTTCTGTTCCATTGGTGTGATTATAGTTCCCAACAAGGGACAACTGTTGTCTGCTACATCCTATCTTAGCAATGAAACCTTGACAAACCTGATTTATAGTGAACTCAGAAAATGGACTTCAGAGTGTTCATTTCAAATTAGACCAATCCTCATTGTCAATGAACCATTCACGATGGATAATGGGTTACTGAGCCCTACAATGAAAGTTCGAAGACACAACGTTACTGCTTATTACAAGAAGGAAACAGAGAACTTATTCAAGGCAATATAATGTGGTAAGGCAATATAACGTGGTTAATTAGTCTCTGGACTTGGACAAACATTTAGCACAAGCTATATATATAAATAACTTTATAATATGCTACATGTGATACAAGCCTTTATATGATATTCTAGGATTAGTCCATGAACGCAAGTACCAAGATACTATCCTAAG ATGTTGATGATGGGCGCGGCGATTCCTTTTACTTGCAATCAGCACTTGTGGATTTCTACCATTTCTCGTCATTCGCTCCAAAGTAGCCCTGATTTTCGAATCTCTTGCCAATCGAAGAGAGGAAGGAGGTATTGTCCAATGCTAGAAACATTAGTTGTAGACAACCCTGAATTGTTCAATCGAATCATTGAAACATTCCGTTCGAAGGCATCCACGAGATGTATCATTCTTCTATGGGGCGAAAACTCAAGCCTGGCAGCTGAGGGACTGGACGCTATCAACTTGGATGATATTGCTACTCTTATCTATACAAGTAGCACAACTGGATACCCTAAAGCTGTCATGCTTACCCACAGAAATTTATTGCACCAGATAAAGAATTTATGGGATGTTATACCTGCTAAAGTTGGGGATAAATTTCTAAGCATGCTTTCACCTTGGCATGCGTACGAACGGGCTTGTGAATATTTCATATTTACACTTGGAGTGGAGCAAACACTACTTGGTTTCTGTTCCATTGGTGTGATTATAGTTCCCAACAAGGGACAACTGTTGTCTGCTACATCCTATCTTAGCAATGAAACCTTGACAAACCTGATTTATAGTGAACTCAGAAAATGGACTTCAGAGTGTTCATTTCAAATTAGACCAATCCTCATTGTCAATGAACCATTCACGATGGATAATGGGTTACTGAGCCCTACAATGAAAGTTCGAAGACACAACGTTACTGCTTATTACAAGAAGGAAACAGAGAACTTATTCAAGGCAATATAA
BLAST of CmoCh08G008450.1 vs. Swiss-Prot
Match: AAE16_ARATH (Probable acyl-activating enzyme 16, chloroplastic OS=Arabidopsis thaliana GN=AAE16 PE=2 SV=1) HSP 1 Score: 152.5 bits (384), Expect = 6.2e-36 Identity = 79/147 (53.74%), Postives = 92/147 (62.59%), Query Frame = 1
BLAST of CmoCh08G008450.1 vs. Swiss-Prot
Match: AAE15_ARATH (Long-chain-fatty-acid--[acyl-carrier-protein] ligase AEE15, chloroplastic OS=Arabidopsis thaliana GN=AAE15 PE=1 SV=1) HSP 1 Score: 136.3 bits (342), Expect = 4.6e-31 Identity = 76/147 (51.70%), Postives = 88/147 (59.86%), Query Frame = 1
BLAST of CmoCh08G008450.1 vs. Swiss-Prot
Match: FAC15_MYCMM (Long-chain-fatty-acid--CoA ligase FadD15 OS=Mycobacterium marinum (strain ATCC BAA-535 / M) GN=fadD15 PE=3 SV=1) HSP 1 Score: 59.3 bits (142), Expect = 7.1e-08 Identity = 35/85 (41.18%), Postives = 44/85 (51.76%), Query Frame = 1
BLAST of CmoCh08G008450.1 vs. Swiss-Prot
Match: FAD11_MYCTO (Putative fatty-acid--CoA ligase fadD11 OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) GN=fadD11 PE=3 SV=1) HSP 1 Score: 54.7 bits (130), Expect = 1.8e-06 Identity = 27/61 (44.26%), Postives = 37/61 (60.66%), Query Frame = 1
BLAST of CmoCh08G008450.1 vs. Swiss-Prot
Match: FAD11_MYCTU (Putative fatty-acid--CoA ligase fadD11 OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) GN=fadD11 PE=3 SV=1) HSP 1 Score: 54.7 bits (130), Expect = 1.8e-06 Identity = 27/61 (44.26%), Postives = 37/61 (60.66%), Query Frame = 1
BLAST of CmoCh08G008450.1 vs. TrEMBL
Match: M5XAK3_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa001870mg PE=4 SV=1) HSP 1 Score: 175.3 bits (443), Expect = 9.9e-41 Identity = 88/147 (59.86%), Postives = 99/147 (67.35%), Query Frame = 1
BLAST of CmoCh08G008450.1 vs. TrEMBL
Match: A0A0L9TMD9_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan01g115700 PE=4 SV=1) HSP 1 Score: 166.4 bits (420), Expect = 4.6e-38 Identity = 85/146 (58.22%), Postives = 96/146 (65.75%), Query Frame = 1
BLAST of CmoCh08G008450.1 vs. TrEMBL
Match: A0A0S3R1K6_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.01G214400 PE=4 SV=1) HSP 1 Score: 166.4 bits (420), Expect = 4.6e-38 Identity = 85/146 (58.22%), Postives = 96/146 (65.75%), Query Frame = 1
BLAST of CmoCh08G008450.1 vs. TrEMBL
Match: V7C657_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_003G051300g PE=4 SV=1) HSP 1 Score: 164.5 bits (415), Expect = 1.8e-37 Identity = 83/146 (56.85%), Postives = 94/146 (64.38%), Query Frame = 1
BLAST of CmoCh08G008450.1 vs. TrEMBL
Match: U5FIS5_POPTR (Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0017s087001g PE=4 SV=1) HSP 1 Score: 162.2 bits (409), Expect = 8.7e-37 Identity = 85/149 (57.05%), Postives = 96/149 (64.43%), Query Frame = 1
BLAST of CmoCh08G008450.1 vs. TAIR10
Match: AT3G23790.1 (AT3G23790.1 AMP-dependent synthetase and ligase family protein) HSP 1 Score: 152.5 bits (384), Expect = 3.5e-37 Identity = 79/147 (53.74%), Postives = 92/147 (62.59%), Query Frame = 1
BLAST of CmoCh08G008450.1 vs. TAIR10
Match: AT4G14070.1 (AT4G14070.1 acyl-activating enzyme 15) HSP 1 Score: 136.3 bits (342), Expect = 2.6e-32 Identity = 76/147 (51.70%), Postives = 88/147 (59.86%), Query Frame = 1
BLAST of CmoCh08G008450.1 vs. TAIR10
Match: AT3G05970.1 (AT3G05970.1 long-chain acyl-CoA synthetase 6) HSP 1 Score: 53.5 bits (127), Expect = 2.2e-07 Identity = 37/107 (34.58%), Postives = 52/107 (48.60%), Query Frame = 1
BLAST of CmoCh08G008450.1 vs. TAIR10
Match: AT5G27600.1 (AT5G27600.1 long-chain acyl-CoA synthetase 7) HSP 1 Score: 51.6 bits (122), Expect = 8.4e-07 Identity = 38/106 (35.85%), Postives = 51/106 (48.11%), Query Frame = 1
BLAST of CmoCh08G008450.1 vs. TAIR10
Match: AT1G77590.1 (AT1G77590.1 long chain acyl-CoA synthetase 9) HSP 1 Score: 51.2 bits (121), Expect = 1.1e-06 Identity = 39/146 (26.71%), Postives = 67/146 (45.89%), Query Frame = 1
BLAST of CmoCh08G008450.1 vs. NCBI nr
Match: gi|596085684|ref|XP_007221302.1| (hypothetical protein PRUPE_ppa001870mg [Prunus persica]) HSP 1 Score: 175.3 bits (443), Expect = 1.4e-40 Identity = 88/147 (59.86%), Postives = 99/147 (67.35%), Query Frame = 1
BLAST of CmoCh08G008450.1 vs. NCBI nr
Match: gi|645232166|ref|XP_008222739.1| (PREDICTED: probable acyl-activating enzyme 16, chloroplastic isoform X2 [Prunus mume]) HSP 1 Score: 173.7 bits (439), Expect = 4.1e-40 Identity = 88/147 (59.86%), Postives = 98/147 (66.67%), Query Frame = 1
BLAST of CmoCh08G008450.1 vs. NCBI nr
Match: gi|645232163|ref|XP_008222738.1| (PREDICTED: probable acyl-activating enzyme 16, chloroplastic isoform X1 [Prunus mume]) HSP 1 Score: 173.7 bits (439), Expect = 4.1e-40 Identity = 88/147 (59.86%), Postives = 98/147 (66.67%), Query Frame = 1
BLAST of CmoCh08G008450.1 vs. NCBI nr
Match: gi|1009175670|ref|XP_015869012.1| (PREDICTED: long-chain-fatty-acid--[acyl-carrier-protein]) HSP 1 Score: 171.4 bits (433), Expect = 2.1e-39 Identity = 88/149 (59.06%), Postives = 97/149 (65.10%), Query Frame = 1
BLAST of CmoCh08G008450.1 vs. NCBI nr
Match: gi|965658051|dbj|BAT74470.1| (hypothetical protein VIGAN_01214400 [Vigna angularis var. angularis]) HSP 1 Score: 166.4 bits (420), Expect = 6.6e-38 Identity = 85/146 (58.22%), Postives = 96/146 (65.75%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
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