CmoCh08G004720.1 (mRNA) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh08G004720.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	WRKY transcription factor 23
Location	Cmo_Chr08 : 2911698 .. 2912749 (+)
Sequence length	851

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AACCCCTCAATTCTCTCTCTAAAAGCCTTATTTCACGGGTAGGGTTTATGGAGCTTGATTTAATTTGGTCGCAATTTGATATGTTTTCGACGTCGTCTTACCCAATTCAAAATCCTGCTATCGACCCCGAGAATTTGGAGATATTGAATGCATGGCCTACATCGTCCACCCAGCTCATCAACGATGAATTGTCGGAGTTGAAGCTACAAGAAGAAGAGAAACCTCGACCAAAAACGGTTAAACCTAACCACTCGTTAGTGTTCCGTCTTTTTTTTTCTCTTTTTAATTCAACAATATTTAGAGGCAAATATCATTTGTTGATGTATTTAAAACATTAAATTTAGGTCGAAAACAAAGAAAACGAATCAGAAGAAGAAAGAGCAAGAACAACGATACACGTTCATGACGAAGAGCAAAGTTGATCATTTAGAAGATGGATATAGATGGAGAAAGTACGGGCAAAAAGCTGTAAAAAACAGCCCTTATCCTAGGTAATATCGTTGTACTCAAATTACTATTATACCCTAAATCTTATGGTGCACGGATGTTTCTAACATGTTTTTTTTTTCTTTTTGTAGGAGCTATTATCGTTGTACTAGTGTAGCATGTAATGTAAAGAAACGAGTGGAGAGATGCTTGAAAGATCCCAGCATTGTTATCACAACTTATGAAGGCCAACACCCTCACTCTACCCCTGTCATGGCTCGATCAACCTTCGTCCCTCCGCCTATCTCTACCTCTCTCCACGAGGGTTCCACATCGTTCACCTCCACCCCTCCTTATCTCTTTCACAACCAAAACGTTCATAATTTAAATTTTGCCCGCCACCCCAATGACTTTGTGGCACCGTCATTTCATCACGAGCGATTGCCACAACACACTGCCTCCTTCGATCCACCTACTCATTTATTTGCTTCTACTACTAATTATGAGTTACTTCAAGATGTTAGTTGGTCGACATGATGTATTGTAACAGCCCAAGTTCACTACTAACAGATATTATCTACTTTGACCCGTTATGTTTCGCCGTCAGCTTCACGATTTTAAAACGC

mRNA sequence

AACCCCTCAATTCTCTCTCTAAAAGCCTTATTTCACGGGTAGGGTTTATGGAGCTTGATTTAATTTGGTCGCAATTTGATATGTTTTCGACGTCGTCTTACCCAATTCAAAATCCTGCTATCGACCCCGAGAATTTGGAGATATTGAATGCATGGCCTACATCGTCCACCCAGCTCATCAACGATGAATTGTCGGAGTTGAAGCTACAAGAAGAAGAGAAACCTCGACCAAAAACGGTTAAACCTAACCACTCGTCGAAAACAAAGAAAACGAATCAGAAGAAGAAAGAGCAAGAACAACGATACACGTTCATGACGAAGAGCAAAGTTGATCATTTAGAAGATGGATATAGATGGAGAAAGTACGGGCAAAAAGCTGAGCTATTATCGTTGTACTAGTGTAGCATGTAATGTAAAGAAACGAGTGGAGAGATGCTTGAAAGATCCCAGCATTGTTATCACAACTTATGAAGGCCAACACCCTCACTCTACCCCTGTCATGGCTCGATCAACCTTCGTCCCTCCGCCTATCTCTACCTCTCTCCACGAGGGTTCCACATCGTTCACCTCCACCCCTCCTTATCTCTTTCACAACCAAAACGTTCATAATTTAAATTTTGCCCGCCACCCCAATGACTTTGTGGCACCGTCATTTCATCACGAGCGATTGCCACAACACACTGCCTCCTTCGATCCACCTACTCATTTATTTGCTTCTACTACTAATTATGAGTTACTTCAAGATGTTAGTTGGTCGACATGATGTATTGTAACAGCCCAAGTTCACTACTAACAGATATTATCTACTTTGACCCGTTATGTTTCGCCGTCAGCTTCACGATTTTAAAACGC

Coding sequence (CDS)

ATGGAGCTTGATTTAATTTGGTCGCAATTTGATATGTTTTCGACGTCGTCTTACCCAATTCAAAATCCTGCTATCGACCCCGAGAATTTGGAGATATTGAATGCATGGCCTACATCGTCCACCCAGCTCATCAACGATGAATTGTCGGAGTTGAAGCTACAAGAAGAAGAGAAACCTCGACCAAAAACGGTTAAACCTAACCACTCGTCGAAAACAAAGAAAACGAATCAGAAGAAGAAAGAGCAAGAACAACGATACACGTTCATGACGAAGAGCAAAGTTGATCATTTAGAAGATGGATATAGATGGAGAAAGTACGGGCAAAAAGCTGAGCTATTATCGTTGTACTAG

Homology

[Close]

BLAST of CmoCh08G004720.1 vs. Swiss-Prot
Match: WRK23_ARATH (Probable WRKY transcription factor 23 OS=Arabidopsis thaliana GN=WRKY23 PE=2 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.7e-09
Identity = 41/96 (42.71%), Postives = 59/96 (61.46%), Query Frame = 1


Query: 16  SSYPIQNPAIDPENLEILNAWPTSSTQLINDELSELKLQEEEKPRPKTVKPNHSSKTK-K 75
           S + + NP   P +  I +A    S++ +N+E  + +  EEE    +  K +   + K K
Sbjct: 95  SDHLLINPPATPNSSSISSA----SSEALNEEKPKTEDNEEEGGEDQQEKSHTKKQLKAK 154

Query: 76  TNQKKKEQEQRYTFMTKSKVDHLEDGYRWRKYGQKA 111
            N +K+++E R  FMTKS+VDHLEDGYRWRKYGQKA
Sbjct: 155 KNNQKRQREARVAFMTKSEVDHLEDGYRWRKYGQKA 186

[Close]

BLAST of CmoCh08G004720.1 vs. Swiss-Prot
Match: WRK28_ARATH (Probable WRKY transcription factor 28 OS=Arabidopsis thaliana GN=WRKY28 PE=2 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.9e-08
Identity = 33/46 (71.74%), Postives = 38/46 (82.61%), Query Frame = 1


Query: 71  KTKKTNQKKKEQEQRYTFMTKSKVDHLEDGYRWRKYGQKAELLSLY 117
           KTKKT + KK++E R +FMTKS+VDHLEDGYRWRKYGQKA   S Y
Sbjct: 146 KTKKT-EVKKQREPRVSFMTKSEVDHLEDGYRWRKYGQKAVKNSPY 190

[Close]

BLAST of CmoCh08G004720.1 vs. Swiss-Prot
Match: WRK48_ARATH (Probable WRKY transcription factor 48 OS=Arabidopsis thaliana GN=WRKY48 PE=2 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.5e-08
Identity = 52/135 (38.52%), Postives = 68/135 (50.37%), Query Frame = 1


Query: 8   SQFDMFSTSSYPIQN-----------PAIDPENLEILNAWPTS---------STQLINDE 67
           S    FS  ++P+ N           P    E+ E++N  PTS         S +  ND 
Sbjct: 108 SNSSSFSFDAFPLPNNNNNTSFFTDLPLPQAESSEVVNTTPTSPNSTSVSSSSNEAANDN 167

Query: 68  LS----ELKLQEE--EKPRPKTVKPNHSSKTKKTNQKKKEQEQRYTFMTKSKVDHLEDGY 117
            S     +K QEE  ++   K  KP    K KK NQKK  +E R+ F+TKS +D+L+DGY
Sbjct: 168 NSGKEVTVKDQEEGDQQQEQKGTKPQ--LKAKKKNQKKA-REARFAFLTKSDIDNLDDGY 227

[Close]

BLAST of CmoCh08G004720.1 vs. Swiss-Prot
Match: WRK71_ARATH (Probable WRKY transcription factor 71 OS=Arabidopsis thaliana GN=WRKY71 PE=2 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 6.0e-07
Identity = 42/118 (35.59%), Postives = 63/118 (53.39%), Query Frame = 1


Query: 13  FSTSSYPIQN--PAIDPENLEILNAWPTSSTQLINDELSELKLQEEEKPRPKTVKPNHS- 72
           FS  S P Q+  P+++   L +     TS++ +++   +E + +E    +   ++ N   
Sbjct: 42  FSPYSSPFQSVSPSVNNPYLNL-----TSNSPVVSSSSNEGEPKENTNDKSDQMEDNEGD 101

Query: 73  -----------SKTKKTNQKKKEQEQRYTFMTKSKVDHLEDGYRWRKYGQKAELLSLY 117
                      +K  K   +KKE+E R  FMTKS++DHLEDGYRWRKYGQKA   S Y
Sbjct: 102 LHGVGESSKQLTKQGKKKGEKKEREVRVAFMTKSEIDHLEDGYRWRKYGQKAVKNSPY 154

[Close]

BLAST of CmoCh08G004720.1 vs. Swiss-Prot
Match: WRK45_ARATH (Probable WRKY transcription factor 45 OS=Arabidopsis thaliana GN=WRKY45 PE=2 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 7.9e-07
Identity = 29/49 (59.18%), Postives = 39/49 (79.59%), Query Frame = 1


Query: 63  TVKPNHSSKTK-KTNQKKKEQEQRYTFMTKSKVDHLEDGYRWRKYGQKA 111
           + +P  SS+ K ++ +KKKE+E RY F T+S+VD L+DGYRWRKYGQKA
Sbjct: 29  SAQPTTSSEEKPRSKKKKKEREARYAFQTRSQVDILDDGYRWRKYGQKA 77

[Close]

BLAST of CmoCh08G004720.1 vs. TrEMBL
Match: E7CEY6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=WRKY52 PE=2 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 4.5e-17
Identity = 59/117 (50.43%), Postives = 78/117 (66.67%), Query Frame = 1


Query: 8   SQFDMFSTSSYPIQNPAI-DPENLEILNAWPTS----------STQLINDELS---ELKL 67
           SQFD+F TSS  + +  I +PENLEI N WPT+          S++++N EL+    L+ 
Sbjct: 39  SQFDVFETSSPSLSSSLISNPENLEIWNQWPTTPNYSSSISSTSSEIVNGELTTEPNLEG 98

Query: 68  QEEEKPRPKTVKPNHSSKTKKTNQKKKEQEQRYTFMTKSKVDHLEDGYRWRKYGQKA 111
            E+++ +  TVK +   KTKK + KKK  E R+ FMTKS+VDHLEDGYRWRKYGQKA
Sbjct: 99  GEQKQDQQPTVKADKQLKTKKRSPKKKGAEPRFAFMTKSEVDHLEDGYRWRKYGQKA 155

[Close]

BLAST of CmoCh08G004720.1 vs. TrEMBL
Match: A0A0D5YAG9_SALMI (WRKY protein OS=Salvia miltiorrhiza GN=WRKY57 PE=2 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 3.7e-11
Identity = 52/113 (46.02%), Postives = 67/113 (59.29%), Query Frame = 1


Query: 11  DMFSTSSYPIQNPAIDPE--NLEILNAWPTSSTQLINDELS-----------ELKLQEEE 70
           D F+     +++P+I P   + E+LNA  T +   I+ E S           E +  EEE
Sbjct: 46  DHFAAFEEEVEDPSIHPNWNSSEVLNAPQTPNCSSISSESSDGVKDERVNEEEDEEDEEE 105

Query: 71  KPRPKTVKPNHSSKTKKTNQKKKEQEQRYTFMTKSKVDHLEDGYRWRKYGQKA 111
               +  K +   K KKTNQKKK +EQR+ FMTKS+VDHLEDGYRWRKYGQKA
Sbjct: 106 DDNDQKKKTSKQLKVKKTNQKKK-REQRFAFMTKSEVDHLEDGYRWRKYGQKA 157

[Close]

BLAST of CmoCh08G004720.1 vs. TrEMBL
Match: G3FFC1_9ROSI (WRKY transcription factor 13-2 (Fragment) OS=Dimocarpus longan PE=2 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 4.8e-11
Identity = 50/105 (47.62%), Postives = 70/105 (66.67%), Query Frame = 1


Query: 14  STSSYPIQNPAIDPENLEILN--------AWPTSSTQLINDELSELKLQEEEKPRPKTVK 73
           S+SS P        E+ E+LN        +  ++S++ +NDE  ++K++EEE+ + KT K
Sbjct: 70  SSSSSPNPTAVTKMESPELLNQPLTPNSSSISSASSEAVNDE--QIKVEEEEEDQQKTKK 129

Query: 74  PNHSSKTKKTNQKKKEQEQRYTFMTKSKVDHLEDGYRWRKYGQKA 111
                K KKTNQK+ ++E R+ FMTKS+VDHLEDGYRWRKYGQKA
Sbjct: 130 ---QLKPKKTNQKR-QREPRFAFMTKSEVDHLEDGYRWRKYGQKA 168

[Close]

BLAST of CmoCh08G004720.1 vs. TrEMBL
Match: A0A0A0L834_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G168410 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 2.4e-10
Identity = 48/112 (42.86%), Postives = 68/112 (60.71%), Query Frame = 1


Query: 8   SQFDMFSTSSYPIQNPAID-PENLEILNAWPTSSTQLINDELSELKLQEEEKPRPKTVKP 67
           S FD+ ST++ P+ +PA   PE+ E++NA  T ++  ++   +E    EE      T   
Sbjct: 71  SFFDLLSTAAPPLSSPASTVPESSEVVNAPTTPNSSSVSSSSNEAAAIEEVNNSTTTHDK 130

Query: 68  NHSSKTKKTNQK--KKEQEQRYTFMTKSKVDHLEDGYRWRKYGQKAELLSLY 117
             +SK  K  +K  KK++E R+ FMTKS +DHL+DGYRWRKYGQKA   S Y
Sbjct: 131 PSASKVLKPIKKNQKKQREPRFAFMTKSDIDHLDDGYRWRKYGQKAVKNSPY 182

[Close]

BLAST of CmoCh08G004720.1 vs. TrEMBL
Match: A0A140H8K6_MANES (WRKY transcription factor 2 OS=Manihot esculenta PE=2 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 2.0e-09
Identity = 54/116 (46.55%), Postives = 70/116 (60.34%), Query Frame = 1


Query: 8   SQFDMFSTSSYPIQNPAIDP-----ENLEILN--AWPTSST------QLINDELSELKLQ 67
           S FD+    S  +Q  A +P     E+ E LN  A P SS+      + +NDEL ++   
Sbjct: 58  SMFDVLQVPSM-VQPAASNPVVTKVESPEALNQPATPNSSSISSASSEALNDELVKVADN 117

Query: 68  EEEKPRPKTVKPNHSSKTKKTNQKKKEQEQRYTFMTKSKVDHLEDGYRWRKYGQKA 111
           EEE+ +    K     K KKTNQK+ ++E R+ FMTKS+VDHLEDGYRWRKYGQKA
Sbjct: 118 EEEEQQ----KTKKELKPKKTNQKR-QREPRFAFMTKSEVDHLEDGYRWRKYGQKA 167

[Close]

BLAST of CmoCh08G004720.1 vs. TAIR10
Match: AT2G47260.1 (AT2G47260.1 WRKY DNA-binding protein 23)

HSP 1 Score: 63.5 bits (153), Expect = 9.6e-11
Identity = 41/96 (42.71%), Postives = 59/96 (61.46%), Query Frame = 1


Query: 16  SSYPIQNPAIDPENLEILNAWPTSSTQLINDELSELKLQEEEKPRPKTVKPNHSSKTK-K 75
           S + + NP   P +  I +A    S++ +N+E  + +  EEE    +  K +   + K K
Sbjct: 95  SDHLLINPPATPNSSSISSA----SSEALNEEKPKTEDNEEEGGEDQQEKSHTKKQLKAK 154

Query: 76  TNQKKKEQEQRYTFMTKSKVDHLEDGYRWRKYGQKA 111
            N +K+++E R  FMTKS+VDHLEDGYRWRKYGQKA
Sbjct: 155 KNNQKRQREARVAFMTKSEVDHLEDGYRWRKYGQKA 186

[Close]

BLAST of CmoCh08G004720.1 vs. TAIR10
Match: AT4G18170.1 (AT4G18170.1 WRKY DNA-binding protein 28)

HSP 1 Score: 60.1 bits (144), Expect = 1.1e-09
Identity = 33/46 (71.74%), Postives = 38/46 (82.61%), Query Frame = 1


Query: 71  KTKKTNQKKKEQEQRYTFMTKSKVDHLEDGYRWRKYGQKAELLSLY 117
           KTKKT + KK++E R +FMTKS+VDHLEDGYRWRKYGQKA   S Y
Sbjct: 146 KTKKT-EVKKQREPRVSFMTKSEVDHLEDGYRWRKYGQKAVKNSPY 190

[Close]

BLAST of CmoCh08G004720.1 vs. TAIR10
Match: AT5G49520.1 (AT5G49520.1 WRKY DNA-binding protein 48)

HSP 1 Score: 59.7 bits (143), Expect = 1.4e-09
Identity = 52/135 (38.52%), Postives = 68/135 (50.37%), Query Frame = 1


Query: 8   SQFDMFSTSSYPIQN-----------PAIDPENLEILNAWPTS---------STQLINDE 67
           S    FS  ++P+ N           P    E+ E++N  PTS         S +  ND 
Sbjct: 108 SNSSSFSFDAFPLPNNNNNTSFFTDLPLPQAESSEVVNTTPTSPNSTSVSSSSNEAANDN 167

Query: 68  LS----ELKLQEE--EKPRPKTVKPNHSSKTKKTNQKKKEQEQRYTFMTKSKVDHLEDGY 117
            S     +K QEE  ++   K  KP    K KK NQKK  +E R+ F+TKS +D+L+DGY
Sbjct: 168 NSGKEVTVKDQEEGDQQQEQKGTKPQ--LKAKKKNQKKA-REARFAFLTKSDIDNLDDGY 227

[Close]

BLAST of CmoCh08G004720.1 vs. TAIR10
Match: AT1G29860.1 (AT1G29860.1 WRKY DNA-binding protein 71)

HSP 1 Score: 55.1 bits (131), Expect = 3.4e-08
Identity = 42/118 (35.59%), Postives = 63/118 (53.39%), Query Frame = 1


Query: 13  FSTSSYPIQN--PAIDPENLEILNAWPTSSTQLINDELSELKLQEEEKPRPKTVKPNHS- 72
           FS  S P Q+  P+++   L +     TS++ +++   +E + +E    +   ++ N   
Sbjct: 42  FSPYSSPFQSVSPSVNNPYLNL-----TSNSPVVSSSSNEGEPKENTNDKSDQMEDNEGD 101

Query: 73  -----------SKTKKTNQKKKEQEQRYTFMTKSKVDHLEDGYRWRKYGQKAELLSLY 117
                      +K  K   +KKE+E R  FMTKS++DHLEDGYRWRKYGQKA   S Y
Sbjct: 102 LHGVGESSKQLTKQGKKKGEKKEREVRVAFMTKSEIDHLEDGYRWRKYGQKAVKNSPY 154

[Close]

BLAST of CmoCh08G004720.1 vs. TAIR10
Match: AT3G01970.1 (AT3G01970.1 WRKY DNA-binding protein 45)

HSP 1 Score: 54.7 bits (130), Expect = 4.5e-08
Identity = 29/49 (59.18%), Postives = 39/49 (79.59%), Query Frame = 1


Query: 63  TVKPNHSSKTK-KTNQKKKEQEQRYTFMTKSKVDHLEDGYRWRKYGQKA 111
           + +P  SS+ K ++ +KKKE+E RY F T+S+VD L+DGYRWRKYGQKA
Sbjct: 29  SAQPTTSSEEKPRSKKKKKEREARYAFQTRSQVDILDDGYRWRKYGQKA 77

[Close]

BLAST of CmoCh08G004720.1 vs. NCBI nr
Match: gi|659101173|ref|XP_008451465.1| (PREDICTED: probable WRKY transcription factor 23 [Cucumis melo])

HSP 1 Score: 101.7 bits (252), Expect = 9.0e-19
Identity = 62/116 (53.45%), Postives = 79/116 (68.10%), Query Frame = 1


Query: 8   SQFDMFSTSSYPIQNPAI-DPENLEILNAWPTS----------STQLINDELSELKLQ-- 67
           SQFD+F TSS  + +  I +PENLEI N WPT+          S++++N EL+E  L+  
Sbjct: 92  SQFDVFETSSPSLSSSLISNPENLEIWNQWPTTPNYSSSISSTSSEIVNGELTEPNLEGG 151

Query: 68  EEEKPRPKTVKPNHSSKTKKTNQKKKEQEQRYTFMTKSKVDHLEDGYRWRKYGQKA 111
           EE++ R  TVK +   KTKK + KKK  E R+ FMTKS+VDHLEDGYRWRKYGQKA
Sbjct: 152 EEKQDRQPTVKTDKQLKTKKRSPKKKGVEPRFAFMTKSEVDHLEDGYRWRKYGQKA 207

[Close]

BLAST of CmoCh08G004720.1 vs. NCBI nr
Match: gi|525507288|ref|NP_001267684.1| (probable WRKY transcription factor 68-like [Cucumis sativus])

HSP 1 Score: 95.5 bits (236), Expect = 6.5e-17
Identity = 59/117 (50.43%), Postives = 78/117 (66.67%), Query Frame = 1


Query: 8   SQFDMFSTSSYPIQNPAI-DPENLEILNAWPTS----------STQLINDELS---ELKL 67
           SQFD+F TSS  + +  I +PENLEI N WPT+          S++++N EL+    L+ 
Sbjct: 39  SQFDVFETSSPSLSSSLISNPENLEIWNQWPTTPNYSSSISSTSSEIVNGELTTEPNLEG 98

Query: 68  QEEEKPRPKTVKPNHSSKTKKTNQKKKEQEQRYTFMTKSKVDHLEDGYRWRKYGQKA 111
            E+++ +  TVK +   KTKK + KKK  E R+ FMTKS+VDHLEDGYRWRKYGQKA
Sbjct: 99  GEQKQDQQPTVKADKQLKTKKRSPKKKGAEPRFAFMTKSEVDHLEDGYRWRKYGQKA 155

[Close]

BLAST of CmoCh08G004720.1 vs. NCBI nr
Match: gi|659077791|ref|XP_008439387.1| (PREDICTED: probable WRKY transcription factor 48 [Cucumis melo])

HSP 1 Score: 77.4 bits (189), Expect = 1.8e-11
Identity = 52/113 (46.02%), Postives = 70/113 (61.95%), Query Frame = 1


Query: 8   SQFDMFSTSSYPIQNPAID-PENLEILNAWPTSSTQLINDELSELKLQEEEKPRPKTVKP 67
           S FD+ ST++ P+ +PA   PE+ E++NA  T ++  ++   +E    EE      T   
Sbjct: 71  SFFDLLSTAAPPLSSPASTVPESSEVVNAPTTPNSSSVSSSSNEAAAIEEVNNSTTTHDK 130

Query: 68  NHSSK---TKKTNQKKKEQEQRYTFMTKSKVDHLEDGYRWRKYGQKAELLSLY 117
             SSK   TKK NQKK ++E R+ FMTKS +DHL+DGYRWRKYGQKA   S Y
Sbjct: 131 PSSSKVVETKKKNQKK-QREPRFAFMTKSDIDHLDDGYRWRKYGQKAVKNSPY 182

[Close]

BLAST of CmoCh08G004720.1 vs. NCBI nr
Match: gi|787592992|gb|AKA27923.1| (WRKY protein [Salvia miltiorrhiza])

HSP 1 Score: 75.9 bits (185), Expect = 5.3e-11
Identity = 52/113 (46.02%), Postives = 67/113 (59.29%), Query Frame = 1


Query: 11  DMFSTSSYPIQNPAIDPE--NLEILNAWPTSSTQLINDELS-----------ELKLQEEE 70
           D F+     +++P+I P   + E+LNA  T +   I+ E S           E +  EEE
Sbjct: 46  DHFAAFEEEVEDPSIHPNWNSSEVLNAPQTPNCSSISSESSDGVKDERVNEEEDEEDEEE 105

Query: 71  KPRPKTVKPNHSSKTKKTNQKKKEQEQRYTFMTKSKVDHLEDGYRWRKYGQKA 111
               +  K +   K KKTNQKKK +EQR+ FMTKS+VDHLEDGYRWRKYGQKA
Sbjct: 106 DDNDQKKKTSKQLKVKKTNQKKK-REQRFAFMTKSEVDHLEDGYRWRKYGQKA 157

[Close]

BLAST of CmoCh08G004720.1 vs. NCBI nr
Match: gi|346456312|gb|AEO31518.1| (WRKY transcription factor 13-2 [Dimocarpus longan])

HSP 1 Score: 75.5 bits (184), Expect = 6.9e-11
Identity = 50/105 (47.62%), Postives = 70/105 (66.67%), Query Frame = 1


Query: 14  STSSYPIQNPAIDPENLEILN--------AWPTSSTQLINDELSELKLQEEEKPRPKTVK 73
           S+SS P        E+ E+LN        +  ++S++ +NDE  ++K++EEE+ + KT K
Sbjct: 70  SSSSSPNPTAVTKMESPELLNQPLTPNSSSISSASSEAVNDE--QIKVEEEEEDQQKTKK 129

Query: 74  PNHSSKTKKTNQKKKEQEQRYTFMTKSKVDHLEDGYRWRKYGQKA 111
                K KKTNQK+ ++E R+ FMTKS+VDHLEDGYRWRKYGQKA
Sbjct: 130 ---QLKPKKTNQKR-QREPRFAFMTKSEVDHLEDGYRWRKYGQKA 168

The following BLAST results are available for this feature:

BLAST of CmoCh08G004720.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
WRK23_ARATH	1.7e-09	42.71	Probable WRKY transcription factor 23 OS=Arabidopsis thaliana GN=WRKY23 PE=2 SV=...	[more]
WRK28_ARATH	1.9e-08	71.74	Probable WRKY transcription factor 28 OS=Arabidopsis thaliana GN=WRKY28 PE=2 SV=...	[more]
WRK48_ARATH	2.5e-08	38.52	Probable WRKY transcription factor 48 OS=Arabidopsis thaliana GN=WRKY48 PE=2 SV=...	[more]
WRK71_ARATH	6.0e-07	35.59	Probable WRKY transcription factor 71 OS=Arabidopsis thaliana GN=WRKY71 PE=2 SV=...	[more]
WRK45_ARATH	7.9e-07	59.18	Probable WRKY transcription factor 45 OS=Arabidopsis thaliana GN=WRKY45 PE=2 SV=...	[more]

BLAST of CmoCh08G004720.1 vs. TrEMBL


Match Name	E-value	Identity	Description
E7CEY6_CUCSA	4.5e-17	50.43	Uncharacterized protein OS=Cucumis sativus GN=WRKY52 PE=2 SV=1	[more]
A0A0D5YAG9_SALMI	3.7e-11	46.02	WRKY protein OS=Salvia miltiorrhiza GN=WRKY57 PE=2 SV=1	[more]
G3FFC1_9ROSI	4.8e-11	47.62	WRKY transcription factor 13-2 (Fragment) OS=Dimocarpus longan PE=2 SV=1	[more]
A0A0A0L834_CUCSA	2.4e-10	42.86	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G168410 PE=4 SV=1	[more]
A0A140H8K6_MANES	2.0e-09	46.55	WRKY transcription factor 2 OS=Manihot esculenta PE=2 SV=1	[more]

BLAST of CmoCh08G004720.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G47260.1	9.6e-11	42.71	WRKY DNA-binding protein 23	[more]
AT4G18170.1	1.1e-09	71.74	WRKY DNA-binding protein 28	[more]
AT5G49520.1	1.4e-09	38.52	WRKY DNA-binding protein 48	[more]
AT1G29860.1	3.4e-08	35.59	WRKY DNA-binding protein 71	[more]
AT3G01970.1	4.5e-08	59.18	WRKY DNA-binding protein 45	[more]

BLAST of CmoCh08G004720.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659101173\|ref\|XP_008451465.1\|	9.0e-19	53.45	PREDICTED: probable WRKY transcription factor 23 [Cucumis melo]	[more]
gi\|525507288\|ref\|NP_001267684.1\|	6.5e-17	50.43	probable WRKY transcription factor 68-like [Cucumis sativus]	[more]
gi\|659077791\|ref\|XP_008439387.1\|	1.8e-11	46.02	PREDICTED: probable WRKY transcription factor 48 [Cucumis melo]	[more]
gi\|787592992\|gb\|AKA27923.1\|	5.3e-11	46.02	WRKY protein [Salvia miltiorrhiza]	[more]
gi\|346456312\|gb\|AEO31518.1\|	6.9e-11	47.62	WRKY transcription factor 13-2 [Dimocarpus longan]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR003657	WRKY_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0003700	transcription factor activity, sequence-specific DNA binding
GO:0043565	sequence-specific DNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005667	transcription factor complex
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh08G004720	CmoCh08G004720	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh08G004720.1	CmoCh08G004720.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh08G004720.1.exon.1	CmoCh08G004720.1.exon.1	exon
CmoCh08G004720.1.exon.2	CmoCh08G004720.1.exon.2	exon
CmoCh08G004720.1.exon.3	CmoCh08G004720.1.exon.3	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh08G004720.1.five_prime_UTR.1	CmoCh08G004720.1.five_prime_UTR.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh08G004720.1.CDS.1	CmoCh08G004720.1.CDS.1	CDS
CmoCh08G004720.1.CDS.2	CmoCh08G004720.1.CDS.2	CDS
CmoCh08G004720.1.CDS.3	CmoCh08G004720.1.CDS.3	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh08G004720.1.three_prime_UTR.1	CmoCh08G004720.1.three_prime_UTR.1	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003657	WRKY domain	GENE3D	G3DSA:2.20.25.80		coord: 82..110 score: 7.
IPR003657	WRKY domain	PROFILE	PS50811	WRKY	coord: 92..109 score:
IPR003657	WRKY domain	unknown	SSF118290	WRKY DNA-binding domain	coord: 89..110 score: 7.0
None	No IPR available	PANTHER	PTHR31221	FAMILY NOT NAMED	coord: 1..110 score: 5.7
None	No IPR available	PANTHER	PTHR31221:SF23	WRKY TRANSCRIPTION FACTOR 23-RELATED	coord: 1..110 score: 5.7