CmoCh07G004960.1 (mRNA) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh07G004960.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	U1 small nuclear ribonucleoprotein 70 kDa, putative
Location	Cmo_Chr07 : 2233623 .. 2235551 (-)
Sequence length	707

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TATAAATACTCTCGTTAAAGCGCTAAGCCATTTCCGTCTTTTCGCTGCCGCCTCTTCTTCGTTCCCTACGTCGGGACACGATTGTACCAATTAGATCCGAGCAGAAACCACTCACCGATGTTCTCCCTCCACTCGATTTGATATCTCGTACAAATTCTTCGTTATTGTACTAGTCTTACGGACGATCGTGCGCTGCCATGGGAGATTACAATGATGCCTTCATGCGGAACCAAAACGCCGCGGTTCAGGCTCGTACCAAGGCCCAGAATCGTGCTAATGTCCTTCAGCTTAAGCTGGTAGGTGGAATGGTTTTCGATGATTATTGTTATTTCTGTAGGAGCGTTCGATTTTGGTTTGTTTGAAGAGAGCTAGGGTTTCAAGAAGTTATTTCGCACTCGTTCATTAGAAGAAATACGGATTTGTCTTTTTGTGTCGCAAAATTATGGATAAATGCTGCTGTAATAGGTCTTGCGTCTTCATGACGATCGGCTTTCGTTTTCATGTTTAGAGATGACAAATTAAGTTTTATCCGTTGAATGGCTCGTAAATTGTTACAACGTGCTGTCAATGTAAGGTGCAGTCTCTTGTTAAGGGAAAAAAAAAGGGGAAAATTATTGTTAGAGGCAGATGGTGTGAAGCGATGACATAATATCATTATTGGGAGTTGAAGTGAGGATTATGGTTCTAGAAGAAGCTTAAAGTGTTTGTAGAACATTCGATTATGGAATCTTTCGGTTTCTTAATTTTGCTTCTTATGCAGATTGGGCAGAGTCATCCCACTGGTCTTACGGCCAATCTCCTGAAGCTCTTTGAGCCCCGACCGCCTTTGGAGTATAAGCCTCCACCAGAAAAAAGAAAATGTCCTCCATTAACAGGTTTTAATTACTTTTCAAAACTTGCATATCATTTATTGATATTTTATGCACTTTTTAAAATTTATTTTTATTTTTACATTTCATTGTTTTCGCGGAGGGATATAATTCTATCTCATTTTGTTTTGAAGGGATGGCCCAGTTTGTGAGTCATTTTGCAGAACCTGATGATCCGGAATATGCACCCCCTGTTCAAGAGGGTGAAACTCCCGTAAGATGATTCACTTCTTAATGATTGTCAGATTGAATTTTAAACCATTCATACTCTCTCTCCAATACATATGTGTTGAGTATATGAATGTATAATAAGGAAAATGAATATTAAGCTTATGACTTCAAGGCTCTATTGTCACTTACGGTGCCAAAGGGTTTGTGTTTTAAACACAGTTTTAGGATTAGAAATTAGGTGGCTTGTACATTTTTAGGCTAGTGTGTAACAAACAATTTATTTGGCCATGGTTTTTGAAGGAAGCAATGCTTCAATTGTCTTTAAACAACAGAGAAATCAGAAAGATACGATTAAACTGAACGTAGGAAACAATGTTCTAAAACAGCATCTGTGCTGCCTCTTACTTATGGTGGTATCTATTTTGCAGACTAGCAGTAAAAGTCTTAATTTTTTTTTTTCCACCTAACTAGTTTATGAAGATTAATTGATGGTAGAAGTCTTAATTTTTTTTTCAGTCGCAAAGGAGGGCCAGAATTCACTTGTTAAGAATTGAAAAGGGTGCACAGAAAGCTGTTGAGGAGCTTCCAAAATGTGATAATCTCTTCAATACTTCAACACCATTTGTTAAAAGACGTTCAATGTCTTGTGTCTTACCTACGTACTTTTGTGCAGATCTTGAACGTGACGATCCAAATGTTACTGGAGATCCATACAAAACTCTCTTTGTGGCTAGACTGGTGTGTAAAATGTAGTGTACATAGTTTTTAGTCTAAGCTAATTGTTTTACTTAAAATGATCGTTATGTGATGGCAGAACTACGAGACATCTGAGAGCAGAATCAAAAGAGAGTTTGAGTCTTATGGGCCAATCAAACGGGTAGGTATTTGA

mRNA sequence

TATAAATACTCTCGTTAAAGCGCTAAGCCATTTCCGTCTTTTCGCTGCCGCCTCTTCTTCGTTCCCTACGTCGGGACACGATTGTACCAATTAGATCCGAGCAGAAACCACTCACCGATGTTCTCCCTCCACTCGATTTGATATCTCGTACAAATTCTTCGTTATTGTACTAGTCTTACGGACGATCGTGCGCTGCCATGGGAGATTACAATGATGCCTTCATGCGGAACCAAAACGCCGCGGTTCAGGCTCGTACCAAGGCCCAGAATCGTGCTAATGTCCTTCAGCTTAAGCTGATTGGGCAGAGTCATCCCACTGGTCTTACGGCCAATCTCCTGAAGCTCTTTGAGCCCCGACCGCCTTTGGAGTATAAGCCTCCACCAGAAAAAAGAAAATGTCCTCCATTAACAGGGATGGCCCAGTTTGTGAGTCATTTTGCAGAACCTGATGATCCGGAATATGCACCCCCTGTTCAAGAGGGTGAAACTCCCTCGCAAAGGAGGGCCAGAATTCACTTGTTAAGAATTGAAAAGGGTGCACAGAAAGCTGTTGAGGAGCTTCCAAAATATCTTGAACGTGACGATCCAAATGTTACTGGAGATCCATACAAAACTCTCTTTGTGGCTAGACTGAACTACGAGACATCTGAGAGCAGAATCAAAAGAGAGTTTGAGTCTTATGGGCCAATCAAACGGGTAGGTATTTGA

Coding sequence (CDS)

ATGGGAGATTACAATGATGCCTTCATGCGGAACCAAAACGCCGCGGTTCAGGCTCGTACCAAGGCCCAGAATCGTGCTAATGTCCTTCAGCTTAAGCTGATTGGGCAGAGTCATCCCACTGGTCTTACGGCCAATCTCCTGAAGCTCTTTGAGCCCCGACCGCCTTTGGAGTATAAGCCTCCACCAGAAAAAAGAAAATGTCCTCCATTAACAGGGATGGCCCAGTTTGTGAGTCATTTTGCAGAACCTGATGATCCGGAATATGCACCCCCTGTTCAAGAGGGTGAAACTCCCTCGCAAAGGAGGGCCAGAATTCACTTGTTAAGAATTGAAAAGGGTGCACAGAAAGCTGTTGAGGAGCTTCCAAAATATCTTGAACGTGACGATCCAAATGTTACTGGAGATCCATACAAAACTCTCTTTGTGGCTAGACTGAACTACGAGACATCTGAGAGCAGAATCAAAAGAGAGTTTGAGTCTTATGGGCCAATCAAACGGGTAGGTATTTGA

Homology

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BLAST of CmoCh07G004960.1 vs. Swiss-Prot
Match: RU17_ARATH (U1 small nuclear ribonucleoprotein 70 kDa OS=Arabidopsis thaliana GN=RNU1 PE=1 SV=1)

HSP 1 Score: 274.6 bits (701), Expect = 7.1e-73
Identity = 134/167 (80.24%), Postives = 145/167 (86.83%), Query Frame = 1


Query: 1   MGDYNDAFMRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLEYKP 60
           MGD  D F+RN NAAVQAR K QNRANVLQLKL+GQSHPTGLT NLLKLFEPRPPLEYKP
Sbjct: 1   MGDSGDPFLRNPNAAVQARAKVQNRANVLQLKLMGQSHPTGLTNNLLKLFEPRPPLEYKP 60

Query: 61  PPEKRKCPPLTGMAQFVSHFAEPDDPEYAPPVQEGETPSQRRARIHLLRIEKGAQKAVEE 120
           PPEKRKCPP TGMAQFVS+FAEP DPEYAPP  E E PSQ+R RIH LR+EKG +KA E+
Sbjct: 61  PPEKRKCPPYTGMAQFVSNFAEPGDPEYAPPKPEVELPSQKRERIHKLRLEKGVEKAAED 120

Query: 121 LPKYLERDDPNVTGDPYKTLFVARLNYETSESRIKREFESYGPIKRV 168
           L KY   +DPN TGDPYKTLFV+RLNYE+SES+IKREFESYGPIKRV
Sbjct: 121 LKKYDPNNDPNATGDPYKTLFVSRLNYESSESKIKREFESYGPIKRV 167

[Close]

BLAST of CmoCh07G004960.1 vs. Swiss-Prot
Match: RU17_BOVIN (U1 small nuclear ribonucleoprotein 70 kDa OS=Bos taurus GN=SNRNP70 PE=2 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 5.1e-23
Identity = 59/131 (45.04%), Postives = 78/131 (59.54%), Query Frame = 1


Query: 42  LTANLLKLFEPRPPLEYKPP-----PEKRKCPPLTGMAQFVSHFAEPDDPEYAPPVQEGE 101
           L  NLL LF PR P+ Y PP      EK    P  G+A ++  F +P D   APP    E
Sbjct: 5   LPPNLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRD---APPPTRAE 64

Query: 102 TPSQRRARIHLLRIEKGAQKAVEELPKYLERDDPNVTGDPYKTLFVARLNYETSESRIKR 161
           T  +R  R    +IE+  Q+   EL  +   +DPN  GD +KTLFVAR+NY+T+ES+++R
Sbjct: 65  TREERMERKRREKIERRQQEVETELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRR 124

Query: 162 EFESYGPIKRV 168
           EFE YGPIKR+
Sbjct: 125 EFEVYGPIKRI 132

[Close]

BLAST of CmoCh07G004960.1 vs. Swiss-Prot
Match: RU17_HUMAN (U1 small nuclear ribonucleoprotein 70 kDa OS=Homo sapiens GN=SNRNP70 PE=1 SV=2)

HSP 1 Score: 109.0 bits (271), Expect = 5.1e-23
Identity = 59/131 (45.04%), Postives = 78/131 (59.54%), Query Frame = 1


Query: 42  LTANLLKLFEPRPPLEYKPP-----PEKRKCPPLTGMAQFVSHFAEPDDPEYAPPVQEGE 101
           L  NLL LF PR P+ Y PP      EK    P  G+A ++  F +P D   APP    E
Sbjct: 5   LPPNLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRD---APPPTRAE 64

Query: 102 TPSQRRARIHLLRIEKGAQKAVEELPKYLERDDPNVTGDPYKTLFVARLNYETSESRIKR 161
           T  +R  R    +IE+  Q+   EL  +   +DPN  GD +KTLFVAR+NY+T+ES+++R
Sbjct: 65  TREERMERKRREKIERRQQEVETELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRR 124

Query: 162 EFESYGPIKRV 168
           EFE YGPIKR+
Sbjct: 125 EFEVYGPIKRI 132

[Close]

BLAST of CmoCh07G004960.1 vs. Swiss-Prot
Match: RU17_MOUSE (U1 small nuclear ribonucleoprotein 70 kDa OS=Mus musculus GN=Snrnp70 PE=1 SV=2)

HSP 1 Score: 109.0 bits (271), Expect = 5.1e-23
Identity = 59/131 (45.04%), Postives = 78/131 (59.54%), Query Frame = 1


Query: 42  LTANLLKLFEPRPPLEYKPP-----PEKRKCPPLTGMAQFVSHFAEPDDPEYAPPVQEGE 101
           L  NLL LF PR P+ Y PP      EK    P  G+A ++  F +P D   APP    E
Sbjct: 5   LPPNLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRD---APPPTRAE 64

Query: 102 TPSQRRARIHLLRIEKGAQKAVEELPKYLERDDPNVTGDPYKTLFVARLNYETSESRIKR 161
           T  +R  R    +IE+  Q+   EL  +   +DPN  GD +KTLFVAR+NY+T+ES+++R
Sbjct: 65  TREERMERKRREKIERRQQEVETELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRR 124

Query: 162 EFESYGPIKRV 168
           EFE YGPIKR+
Sbjct: 125 EFEVYGPIKRI 132

[Close]

BLAST of CmoCh07G004960.1 vs. Swiss-Prot
Match: RU17_XENLA (U1 small nuclear ribonucleoprotein 70 kDa OS=Xenopus laevis GN=snrnp70 PE=2 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 5.7e-22
Identity = 59/133 (44.36%), Postives = 77/133 (57.89%), Query Frame = 1


Query: 42  LTANLLKLFEPRPPLEYKPP-----PEKRKCPPLTGMAQFVSHFAEPDDPEYAPPVQEGE 101
           L  NLL LF PR P+ Y PP      EK    P  G+A ++  F +P D   APP    E
Sbjct: 5   LPPNLLALFAPRDPVPYLPPLDKLPHEKHHNQPYCGIAPYIREFEDPRD---APPPTRAE 64

Query: 102 TPSQRRARIHLLRIEKGAQKAVEELPKYLERDDPNVTGDPYKTLFVARLNYETSESRIKR 161
           T  +R  R    +IE+  Q    EL  +   +D N  GD +KTLFVAR+NY+T+ES+++R
Sbjct: 65  TREERMERKRREKIERRQQDVENELKIWDPHNDQNAQGDAFKTLFVARVNYDTTESKLRR 124

Query: 162 EFESYGPIKRVGI 170
           EFE YGPIKR+ I
Sbjct: 125 EFEVYGPIKRIHI 134

[Close]

BLAST of CmoCh07G004960.1 vs. TrEMBL
Match: A0A0A0KGZ1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G502610 PE=4 SV=1)

HSP 1 Score: 327.8 bits (839), Expect = 7.8e-87
Identity = 159/167 (95.21%), Postives = 166/167 (99.40%), Query Frame = 1


Query: 1   MGDYNDAFMRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLEYKP 60
           MGDYNDAFMRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLE+KP
Sbjct: 1   MGDYNDAFMRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLEFKP 60

Query: 61  PPEKRKCPPLTGMAQFVSHFAEPDDPEYAPPVQEGETPSQRRARIHLLRIEKGAQKAVEE 120
           PPEKRKCPPLTGMAQFVS+FAEPDDPEYAPPVQ+GETP++RRARIHLLRIEKGA+KA EE
Sbjct: 61  PPEKRKCPPLTGMAQFVSNFAEPDDPEYAPPVQKGETPTERRARIHLLRIEKGAEKAAEE 120

Query: 121 LPKYLERDDPNVTGDPYKTLFVARLNYETSESRIKREFESYGPIKRV 168
           LPKYLERDDPNVTGDPYKTLFVARLNYET+ESRIKREFESYGPIKRV
Sbjct: 121 LPKYLERDDPNVTGDPYKTLFVARLNYETTESRIKREFESYGPIKRV 167

[Close]

BLAST of CmoCh07G004960.1 vs. TrEMBL
Match: B9S6I9_RICCO (U1 small nuclear ribonucleoprotein 70 kDa, putative OS=Ricinus communis GN=RCOM_0536950 PE=4 SV=1)

HSP 1 Score: 298.9 bits (764), Expect = 3.9e-78
Identity = 145/167 (86.83%), Postives = 153/167 (91.62%), Query Frame = 1


Query: 1   MGDYNDAFMRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLEYKP 60
           MGDYNDAFMRNQNAAV+  TK QNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLEYKP
Sbjct: 1   MGDYNDAFMRNQNAAVRGATKGQNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLEYKP 60

Query: 61  PPEKRKCPPLTGMAQFVSHFAEPDDPEYAPPVQEGETPSQRRARIHLLRIEKGAQKAVEE 120
           PPEKRKCPP TGMAQFV+ FAEP DPEYAPPVQE ETP+QRRARIH LR+EKGA+KA EE
Sbjct: 61  PPEKRKCPPYTGMAQFVTQFAEPGDPEYAPPVQEAETPTQRRARIHQLRLEKGAEKAAEE 120

Query: 121 LPKYLERDDPNVTGDPYKTLFVARLNYETSESRIKREFESYGPIKRV 168
           L KY    DPN++GDPYKTLFVARLNYET+ESRIKREFESYGPIKRV
Sbjct: 121 LQKYDPNSDPNISGDPYKTLFVARLNYETTESRIKREFESYGPIKRV 167

[Close]

BLAST of CmoCh07G004960.1 vs. TrEMBL
Match: V4SPA8_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10025502mg PE=4 SV=1)

HSP 1 Score: 298.5 bits (763), Expect = 5.1e-78
Identity = 146/167 (87.43%), Postives = 156/167 (93.41%), Query Frame = 1


Query: 1   MGDYNDAFMRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLEYKP 60
           MGDYNDAFMRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPR PLEYKP
Sbjct: 1   MGDYNDAFMRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRAPLEYKP 60

Query: 61  PPEKRKCPPLTGMAQFVSHFAEPDDPEYAPPVQEGETPSQRRARIHLLRIEKGAQKAVEE 120
           PPEKRKCPPLTGMAQFVSHFAEP DP YAPPV++ ETP +RRARIH LR+EKGA+KA EE
Sbjct: 61  PPEKRKCPPLTGMAQFVSHFAEPGDPLYAPPVEKAETPVERRARIHKLRLEKGAEKAAEE 120

Query: 121 LPKYLERDDPNVTGDPYKTLFVARLNYETSESRIKREFESYGPIKRV 168
           L KY   +DPNV+GDPYKTLFVARL+YET+ES+IKREFESYGPIKRV
Sbjct: 121 LKKYDPHNDPNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRV 167

[Close]

BLAST of CmoCh07G004960.1 vs. TrEMBL
Match: A0A067GIN6_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g010771mg PE=4 SV=1)

HSP 1 Score: 298.5 bits (763), Expect = 5.1e-78
Identity = 146/167 (87.43%), Postives = 156/167 (93.41%), Query Frame = 1


Query: 1   MGDYNDAFMRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLEYKP 60
           MGDYNDAFMRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPR PLEYKP
Sbjct: 1   MGDYNDAFMRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRAPLEYKP 60

Query: 61  PPEKRKCPPLTGMAQFVSHFAEPDDPEYAPPVQEGETPSQRRARIHLLRIEKGAQKAVEE 120
           PPEKRKCPPLTGMAQFVSHFAEP DP YAPPV++ ETP +RRARIH LR+EKGA+KA EE
Sbjct: 61  PPEKRKCPPLTGMAQFVSHFAEPGDPLYAPPVEKAETPVERRARIHKLRLEKGAEKAAEE 120

Query: 121 LPKYLERDDPNVTGDPYKTLFVARLNYETSESRIKREFESYGPIKRV 168
           L KY   +DPNV+GDPYKTLFVARL+YET+ES+IKREFESYGPIKRV
Sbjct: 121 LKKYDPHNDPNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRV 167

[Close]

BLAST of CmoCh07G004960.1 vs. TrEMBL
Match: V4SJA7_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10025502mg PE=4 SV=1)

HSP 1 Score: 298.5 bits (763), Expect = 5.1e-78
Identity = 146/167 (87.43%), Postives = 156/167 (93.41%), Query Frame = 1


Query: 1   MGDYNDAFMRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLEYKP 60
           MGDYNDAFMRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPR PLEYKP
Sbjct: 1   MGDYNDAFMRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRAPLEYKP 60

Query: 61  PPEKRKCPPLTGMAQFVSHFAEPDDPEYAPPVQEGETPSQRRARIHLLRIEKGAQKAVEE 120
           PPEKRKCPPLTGMAQFVSHFAEP DP YAPPV++ ETP +RRARIH LR+EKGA+KA EE
Sbjct: 61  PPEKRKCPPLTGMAQFVSHFAEPGDPLYAPPVEKAETPVERRARIHKLRLEKGAEKAAEE 120

Query: 121 LPKYLERDDPNVTGDPYKTLFVARLNYETSESRIKREFESYGPIKRV 168
           L KY   +DPNV+GDPYKTLFVARL+YET+ES+IKREFESYGPIKRV
Sbjct: 121 LKKYDPHNDPNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRV 167

[Close]

BLAST of CmoCh07G004960.1 vs. TAIR10
Match: AT3G50670.1 (AT3G50670.1 U1 small nuclear ribonucleoprotein-70K)

HSP 1 Score: 274.6 bits (701), Expect = 4.0e-74
Identity = 134/167 (80.24%), Postives = 145/167 (86.83%), Query Frame = 1


Query: 1   MGDYNDAFMRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLEYKP 60
           MGD  D F+RN NAAVQAR K QNRANVLQLKL+GQSHPTGLT NLLKLFEPRPPLEYKP
Sbjct: 1   MGDSGDPFLRNPNAAVQARAKVQNRANVLQLKLMGQSHPTGLTNNLLKLFEPRPPLEYKP 60

Query: 61  PPEKRKCPPLTGMAQFVSHFAEPDDPEYAPPVQEGETPSQRRARIHLLRIEKGAQKAVEE 120
           PPEKRKCPP TGMAQFVS+FAEP DPEYAPP  E E PSQ+R RIH LR+EKG +KA E+
Sbjct: 61  PPEKRKCPPYTGMAQFVSNFAEPGDPEYAPPKPEVELPSQKRERIHKLRLEKGVEKAAED 120

Query: 121 LPKYLERDDPNVTGDPYKTLFVARLNYETSESRIKREFESYGPIKRV 168
           L KY   +DPN TGDPYKTLFV+RLNYE+SES+IKREFESYGPIKRV
Sbjct: 121 LKKYDPNNDPNATGDPYKTLFVSRLNYESSESKIKREFESYGPIKRV 167

[Close]

BLAST of CmoCh07G004960.1 vs. NCBI nr
Match: gi|449451513|ref|XP_004143506.1| (PREDICTED: U1 small nuclear ribonucleoprotein 70 kDa [Cucumis sativus])

HSP 1 Score: 327.8 bits (839), Expect = 1.1e-86
Identity = 159/167 (95.21%), Postives = 166/167 (99.40%), Query Frame = 1


Query: 1   MGDYNDAFMRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLEYKP 60
           MGDYNDAFMRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLE+KP
Sbjct: 1   MGDYNDAFMRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLEFKP 60

Query: 61  PPEKRKCPPLTGMAQFVSHFAEPDDPEYAPPVQEGETPSQRRARIHLLRIEKGAQKAVEE 120
           PPEKRKCPPLTGMAQFVS+FAEPDDPEYAPPVQ+GETP++RRARIHLLRIEKGA+KA EE
Sbjct: 61  PPEKRKCPPLTGMAQFVSNFAEPDDPEYAPPVQKGETPTERRARIHLLRIEKGAEKAAEE 120

Query: 121 LPKYLERDDPNVTGDPYKTLFVARLNYETSESRIKREFESYGPIKRV 168
           LPKYLERDDPNVTGDPYKTLFVARLNYET+ESRIKREFESYGPIKRV
Sbjct: 121 LPKYLERDDPNVTGDPYKTLFVARLNYETTESRIKREFESYGPIKRV 167

[Close]

BLAST of CmoCh07G004960.1 vs. NCBI nr
Match: gi|659080269|ref|XP_008440701.1| (PREDICTED: U1 small nuclear ribonucleoprotein 70 kDa [Cucumis melo])

HSP 1 Score: 327.8 bits (839), Expect = 1.1e-86
Identity = 159/167 (95.21%), Postives = 166/167 (99.40%), Query Frame = 1


Query: 1   MGDYNDAFMRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLEYKP 60
           MGDYNDAFMRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLE+KP
Sbjct: 1   MGDYNDAFMRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLEFKP 60

Query: 61  PPEKRKCPPLTGMAQFVSHFAEPDDPEYAPPVQEGETPSQRRARIHLLRIEKGAQKAVEE 120
           PPEKRKCPPLTGMAQFVS+FAEPDDPEYAPPVQ+GETP++RRARIHLLRIEKGA+KA EE
Sbjct: 61  PPEKRKCPPLTGMAQFVSNFAEPDDPEYAPPVQKGETPAERRARIHLLRIEKGAEKAAEE 120

Query: 121 LPKYLERDDPNVTGDPYKTLFVARLNYETSESRIKREFESYGPIKRV 168
           LPKYLERDDPNVTGDPYKTLFVARLNYET+ESRIKREFESYGPIKRV
Sbjct: 121 LPKYLERDDPNVTGDPYKTLFVARLNYETTESRIKREFESYGPIKRV 167

[Close]

BLAST of CmoCh07G004960.1 vs. NCBI nr
Match: gi|255561192|ref|XP_002521608.1| (PREDICTED: U1 small nuclear ribonucleoprotein 70 kDa [Ricinus communis])

HSP 1 Score: 298.9 bits (764), Expect = 5.6e-78
Identity = 145/167 (86.83%), Postives = 153/167 (91.62%), Query Frame = 1


Query: 1   MGDYNDAFMRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLEYKP 60
           MGDYNDAFMRNQNAAV+  TK QNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLEYKP
Sbjct: 1   MGDYNDAFMRNQNAAVRGATKGQNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLEYKP 60

Query: 61  PPEKRKCPPLTGMAQFVSHFAEPDDPEYAPPVQEGETPSQRRARIHLLRIEKGAQKAVEE 120
           PPEKRKCPP TGMAQFV+ FAEP DPEYAPPVQE ETP+QRRARIH LR+EKGA+KA EE
Sbjct: 61  PPEKRKCPPYTGMAQFVTQFAEPGDPEYAPPVQEAETPTQRRARIHQLRLEKGAEKAAEE 120

Query: 121 LPKYLERDDPNVTGDPYKTLFVARLNYETSESRIKREFESYGPIKRV 168
           L KY    DPN++GDPYKTLFVARLNYET+ESRIKREFESYGPIKRV
Sbjct: 121 LQKYDPNSDPNISGDPYKTLFVARLNYETTESRIKREFESYGPIKRV 167

[Close]

BLAST of CmoCh07G004960.1 vs. NCBI nr
Match: gi|567866145|ref|XP_006425695.1| (hypothetical protein CICLE_v10025502mg [Citrus clementina])

HSP 1 Score: 298.5 bits (763), Expect = 7.3e-78
Identity = 146/167 (87.43%), Postives = 156/167 (93.41%), Query Frame = 1


Query: 1   MGDYNDAFMRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLEYKP 60
           MGDYNDAFMRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPR PLEYKP
Sbjct: 1   MGDYNDAFMRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRAPLEYKP 60

Query: 61  PPEKRKCPPLTGMAQFVSHFAEPDDPEYAPPVQEGETPSQRRARIHLLRIEKGAQKAVEE 120
           PPEKRKCPPLTGMAQFVSHFAEP DP YAPPV++ ETP +RRARIH LR+EKGA+KA EE
Sbjct: 61  PPEKRKCPPLTGMAQFVSHFAEPGDPLYAPPVEKAETPVERRARIHKLRLEKGAEKAAEE 120

Query: 121 LPKYLERDDPNVTGDPYKTLFVARLNYETSESRIKREFESYGPIKRV 168
           L KY   +DPNV+GDPYKTLFVARL+YET+ES+IKREFESYGPIKRV
Sbjct: 121 LKKYDPHNDPNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRV 167

[Close]

BLAST of CmoCh07G004960.1 vs. NCBI nr
Match: gi|1009145204|ref|XP_015890205.1| (PREDICTED: U1 small nuclear ribonucleoprotein 70 kDa isoform X1 [Ziziphus jujuba])

HSP 1 Score: 298.5 bits (763), Expect = 7.3e-78
Identity = 144/167 (86.23%), Postives = 157/167 (94.01%), Query Frame = 1


Query: 1   MGDYNDAFMRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLEYKP 60
           MGDYNDAFMRNQN+AVQARTKAQNRANVLQLKLIGQSHPTGLT NLLKLFEPRPPLE+KP
Sbjct: 1   MGDYNDAFMRNQNSAVQARTKAQNRANVLQLKLIGQSHPTGLTNNLLKLFEPRPPLEFKP 60

Query: 61  PPEKRKCPPLTGMAQFVSHFAEPDDPEYAPPVQEGETPSQRRARIHLLRIEKGAQKAVEE 120
           PPEKRKCPPLTG+AQFVS FAEP DPEYAPPVQ+GETP +RRARIH LR+EKGA+KA EE
Sbjct: 61  PPEKRKCPPLTGVAQFVSKFAEPGDPEYAPPVQKGETPVERRARIHKLRLEKGAEKAAEE 120

Query: 121 LPKYLERDDPNVTGDPYKTLFVARLNYETSESRIKREFESYGPIKRV 168
           L KY   +DPNVTGDPYKTLFVARLNYET+ESRI+REF++YGPIKR+
Sbjct: 121 LEKYDPANDPNVTGDPYKTLFVARLNYETTESRIRREFDTYGPIKRI 167

The following BLAST results are available for this feature:

BLAST of CmoCh07G004960.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RU17_ARATH	7.1e-73	80.24	U1 small nuclear ribonucleoprotein 70 kDa OS=Arabidopsis thaliana GN=RNU1 PE=1 S...	[more]
RU17_BOVIN	5.1e-23	45.04	U1 small nuclear ribonucleoprotein 70 kDa OS=Bos taurus GN=SNRNP70 PE=2 SV=1	[more]
RU17_HUMAN	5.1e-23	45.04	U1 small nuclear ribonucleoprotein 70 kDa OS=Homo sapiens GN=SNRNP70 PE=1 SV=2	[more]
RU17_MOUSE	5.1e-23	45.04	U1 small nuclear ribonucleoprotein 70 kDa OS=Mus musculus GN=Snrnp70 PE=1 SV=2	[more]
RU17_XENLA	5.7e-22	44.36	U1 small nuclear ribonucleoprotein 70 kDa OS=Xenopus laevis GN=snrnp70 PE=2 SV=1	[more]

BLAST of CmoCh07G004960.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KGZ1_CUCSA	7.8e-87	95.21	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G502610 PE=4 SV=1	[more]
B9S6I9_RICCO	3.9e-78	86.83	U1 small nuclear ribonucleoprotein 70 kDa, putative OS=Ricinus communis GN=RCOM_...	[more]
V4SPA8_9ROSI	5.1e-78	87.43	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10025502mg PE=4 SV=1	[more]
A0A067GIN6_CITSI	5.1e-78	87.43	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g010771mg PE=4 SV=1	[more]
V4SJA7_9ROSI	5.1e-78	87.43	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10025502mg PE=4 SV=1	[more]

BLAST of CmoCh07G004960.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G50670.1	4.0e-74	80.24	U1 small nuclear ribonucleoprotein-70K	[more]

BLAST of CmoCh07G004960.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449451513\|ref\|XP_004143506.1\|	1.1e-86	95.21	PREDICTED: U1 small nuclear ribonucleoprotein 70 kDa [Cucumis sativus]	[more]
gi\|659080269\|ref\|XP_008440701.1\|	1.1e-86	95.21	PREDICTED: U1 small nuclear ribonucleoprotein 70 kDa [Cucumis melo]	[more]
gi\|255561192\|ref\|XP_002521608.1\|	5.6e-78	86.83	PREDICTED: U1 small nuclear ribonucleoprotein 70 kDa [Ricinus communis]	[more]
gi\|567866145\|ref\|XP_006425695.1\|	7.3e-78	87.43	hypothetical protein CICLE_v10025502mg [Citrus clementina]	[more]
gi\|1009145204\|ref\|XP_015890205.1\|	7.3e-78	86.23	PREDICTED: U1 small nuclear ribonucleoprotein 70 kDa isoform X1 [Ziziphus jujuba...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR022023	U1snRNP70_N

Vocabulary: **Molecular Function**
Term	Definition
GO:0000166	nucleotide binding

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0030529	intracellular ribonucleoprotein complex
cellular_component	GO:0005634	nucleus
cellular_component	GO:0019013	viral nucleocapsid
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0003676	nucleic acid binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh07G004960	CmoCh07G004960	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh07G004960.1	CmoCh07G004960.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh07G004960.1.CDS.6	CmoCh07G004960.1.CDS.6	CDS
CmoCh07G004960.1.CDS.5	CmoCh07G004960.1.CDS.5	CDS
CmoCh07G004960.1.CDS.4	CmoCh07G004960.1.CDS.4	CDS
CmoCh07G004960.1.CDS.3	CmoCh07G004960.1.CDS.3	CDS
CmoCh07G004960.1.CDS.2	CmoCh07G004960.1.CDS.2	CDS
CmoCh07G004960.1.CDS.1	CmoCh07G004960.1.CDS.1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh07G004960.1.five_prime_UTR.1	CmoCh07G004960.1.five_prime_UTR.1	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh07G004960.1.exon.6	CmoCh07G004960.1.exon.6	exon
CmoCh07G004960.1.exon.5	CmoCh07G004960.1.exon.5	exon
CmoCh07G004960.1.exon.4	CmoCh07G004960.1.exon.4	exon
CmoCh07G004960.1.exon.3	CmoCh07G004960.1.exon.3	exon
CmoCh07G004960.1.exon.2	CmoCh07G004960.1.exon.2	exon
CmoCh07G004960.1.exon.1	CmoCh07G004960.1.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012677	Nucleotide-binding alpha-beta plait domain	GENE3D	G3DSA:3.30.70.330		coord: 116..167 score: 2.
IPR012677	Nucleotide-binding alpha-beta plait domain	unknown	SSF54928	RNA-binding domain, RBD	coord: 127..167 score: 1.7
IPR022023	U1 small nuclear ribonucleoprotein of 70kDa N-terminal	PFAM	PF12220	U1snRNP70_N	coord: 41..129 score: 4.5
None	No IPR available	PANTHER	PTHR13952	U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KD	coord: 32..167 score: 6.9