CmoCh07G004960 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh07G004960
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionU1 small nuclear ribonucleoprotein 70 kDa, putative
LocationCmo_Chr07 : 2233623 .. 2235551 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TATAAATACTCTCGTTAAAGCGCTAAGCCATTTCCGTCTTTTCGCTGCCGCCTCTTCTTCGTTCCCTACGTCGGGACACGATTGTACCAATTAGATCCGAGCAGAAACCACTCACCGATGTTCTCCCTCCACTCGATTTGATATCTCGTACAAATTCTTCGTTATTGTACTAGTCTTACGGACGATCGTGCGCTGCCATGGGAGATTACAATGATGCCTTCATGCGGAACCAAAACGCCGCGGTTCAGGCTCGTACCAAGGCCCAGAATCGTGCTAATGTCCTTCAGCTTAAGCTGGTAGGTGGAATGGTTTTCGATGATTATTGTTATTTCTGTAGGAGCGTTCGATTTTGGTTTGTTTGAAGAGAGCTAGGGTTTCAAGAAGTTATTTCGCACTCGTTCATTAGAAGAAATACGGATTTGTCTTTTTGTGTCGCAAAATTATGGATAAATGCTGCTGTAATAGGTCTTGCGTCTTCATGACGATCGGCTTTCGTTTTCATGTTTAGAGATGACAAATTAAGTTTTATCCGTTGAATGGCTCGTAAATTGTTACAACGTGCTGTCAATGTAAGGTGCAGTCTCTTGTTAAGGGAAAAAAAAAGGGGAAAATTATTGTTAGAGGCAGATGGTGTGAAGCGATGACATAATATCATTATTGGGAGTTGAAGTGAGGATTATGGTTCTAGAAGAAGCTTAAAGTGTTTGTAGAACATTCGATTATGGAATCTTTCGGTTTCTTAATTTTGCTTCTTATGCAGATTGGGCAGAGTCATCCCACTGGTCTTACGGCCAATCTCCTGAAGCTCTTTGAGCCCCGACCGCCTTTGGAGTATAAGCCTCCACCAGAAAAAAGAAAATGTCCTCCATTAACAGGTTTTAATTACTTTTCAAAACTTGCATATCATTTATTGATATTTTATGCACTTTTTAAAATTTATTTTTATTTTTACATTTCATTGTTTTCGCGGAGGGATATAATTCTATCTCATTTTGTTTTGAAGGGATGGCCCAGTTTGTGAGTCATTTTGCAGAACCTGATGATCCGGAATATGCACCCCCTGTTCAAGAGGGTGAAACTCCCGTAAGATGATTCACTTCTTAATGATTGTCAGATTGAATTTTAAACCATTCATACTCTCTCTCCAATACATATGTGTTGAGTATATGAATGTATAATAAGGAAAATGAATATTAAGCTTATGACTTCAAGGCTCTATTGTCACTTACGGTGCCAAAGGGTTTGTGTTTTAAACACAGTTTTAGGATTAGAAATTAGGTGGCTTGTACATTTTTAGGCTAGTGTGTAACAAACAATTTATTTGGCCATGGTTTTTGAAGGAAGCAATGCTTCAATTGTCTTTAAACAACAGAGAAATCAGAAAGATACGATTAAACTGAACGTAGGAAACAATGTTCTAAAACAGCATCTGTGCTGCCTCTTACTTATGGTGGTATCTATTTTGCAGACTAGCAGTAAAAGTCTTAATTTTTTTTTTTCCACCTAACTAGTTTATGAAGATTAATTGATGGTAGAAGTCTTAATTTTTTTTTCAGTCGCAAAGGAGGGCCAGAATTCACTTGTTAAGAATTGAAAAGGGTGCACAGAAAGCTGTTGAGGAGCTTCCAAAATGTGATAATCTCTTCAATACTTCAACACCATTTGTTAAAAGACGTTCAATGTCTTGTGTCTTACCTACGTACTTTTGTGCAGATCTTGAACGTGACGATCCAAATGTTACTGGAGATCCATACAAAACTCTCTTTGTGGCTAGACTGGTGTGTAAAATGTAGTGTACATAGTTTTTAGTCTAAGCTAATTGTTTTACTTAAAATGATCGTTATGTGATGGCAGAACTACGAGACATCTGAGAGCAGAATCAAAAGAGAGTTTGAGTCTTATGGGCCAATCAAACGGGTAGGTATTTGA

mRNA sequence

TATAAATACTCTCGTTAAAGCGCTAAGCCATTTCCGTCTTTTCGCTGCCGCCTCTTCTTCGTTCCCTACGTCGGGACACGATTGTACCAATTAGATCCGAGCAGAAACCACTCACCGATGTTCTCCCTCCACTCGATTTGATATCTCGTACAAATTCTTCGTTATTGTACTAGTCTTACGGACGATCGTGCGCTGCCATGGGAGATTACAATGATGCCTTCATGCGGAACCAAAACGCCGCGGTTCAGGCTCGTACCAAGGCCCAGAATCGTGCTAATGTCCTTCAGCTTAAGCTGATTGGGCAGAGTCATCCCACTGGTCTTACGGCCAATCTCCTGAAGCTCTTTGAGCCCCGACCGCCTTTGGAGTATAAGCCTCCACCAGAAAAAAGAAAATGTCCTCCATTAACAGGGATGGCCCAGTTTGTGAGTCATTTTGCAGAACCTGATGATCCGGAATATGCACCCCCTGTTCAAGAGGGTGAAACTCCCTCGCAAAGGAGGGCCAGAATTCACTTGTTAAGAATTGAAAAGGGTGCACAGAAAGCTGTTGAGGAGCTTCCAAAATATCTTGAACGTGACGATCCAAATGTTACTGGAGATCCATACAAAACTCTCTTTGTGGCTAGACTGAACTACGAGACATCTGAGAGCAGAATCAAAAGAGAGTTTGAGTCTTATGGGCCAATCAAACGGGTAGGTATTTGA

Coding sequence (CDS)

ATGGGAGATTACAATGATGCCTTCATGCGGAACCAAAACGCCGCGGTTCAGGCTCGTACCAAGGCCCAGAATCGTGCTAATGTCCTTCAGCTTAAGCTGATTGGGCAGAGTCATCCCACTGGTCTTACGGCCAATCTCCTGAAGCTCTTTGAGCCCCGACCGCCTTTGGAGTATAAGCCTCCACCAGAAAAAAGAAAATGTCCTCCATTAACAGGGATGGCCCAGTTTGTGAGTCATTTTGCAGAACCTGATGATCCGGAATATGCACCCCCTGTTCAAGAGGGTGAAACTCCCTCGCAAAGGAGGGCCAGAATTCACTTGTTAAGAATTGAAAAGGGTGCACAGAAAGCTGTTGAGGAGCTTCCAAAATATCTTGAACGTGACGATCCAAATGTTACTGGAGATCCATACAAAACTCTCTTTGTGGCTAGACTGAACTACGAGACATCTGAGAGCAGAATCAAAAGAGAGTTTGAGTCTTATGGGCCAATCAAACGGGTAGGTATTTGA
Homology
[Close]
BLAST of CmoCh07G004960 vs. Swiss-Prot
Match: RU17_ARATH (U1 small nuclear ribonucleoprotein 70 kDa OS=Arabidopsis thaliana GN=RNU1 PE=1 SV=1)

HSP 1 Score: 274.6 bits (701), Expect = 7.1e-73
Identity = 134/167 (80.24%), Postives = 145/167 (86.83%), Query Frame = 1 

Query: 1   MGDYNDAFMRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLEYKP 60
           MGD  D F+RN NAAVQAR K QNRANVLQLKL+GQSHPTGLT NLLKLFEPRPPLEYKP
Sbjct: 1   MGDSGDPFLRNPNAAVQARAKVQNRANVLQLKLMGQSHPTGLTNNLLKLFEPRPPLEYKP 60

Query: 61  PPEKRKCPPLTGMAQFVSHFAEPDDPEYAPPVQEGETPSQRRARIHLLRIEKGAQKAVEE 120
           PPEKRKCPP TGMAQFVS+FAEP DPEYAPP  E E PSQ+R RIH LR+EKG +KA E+
Sbjct: 61  PPEKRKCPPYTGMAQFVSNFAEPGDPEYAPPKPEVELPSQKRERIHKLRLEKGVEKAAED 120

Query: 121 LPKYLERDDPNVTGDPYKTLFVARLNYETSESRIKREFESYGPIKRV 168
           L KY   +DPN TGDPYKTLFV+RLNYE+SES+IKREFESYGPIKRV
Sbjct: 121 LKKYDPNNDPNATGDPYKTLFVSRLNYESSESKIKREFESYGPIKRV 167

[Close]
BLAST of CmoCh07G004960 vs. Swiss-Prot
Match: RU17_BOVIN (U1 small nuclear ribonucleoprotein 70 kDa OS=Bos taurus GN=SNRNP70 PE=2 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 5.1e-23
Identity = 59/131 (45.04%), Postives = 78/131 (59.54%), Query Frame = 1 

Query: 42  LTANLLKLFEPRPPLEYKPP-----PEKRKCPPLTGMAQFVSHFAEPDDPEYAPPVQEGE 101
           L  NLL LF PR P+ Y PP      EK    P  G+A ++  F +P D   APP    E
Sbjct: 5   LPPNLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRD---APPPTRAE 64

Query: 102 TPSQRRARIHLLRIEKGAQKAVEELPKYLERDDPNVTGDPYKTLFVARLNYETSESRIKR 161
           T  +R  R    +IE+  Q+   EL  +   +DPN  GD +KTLFVAR+NY+T+ES+++R
Sbjct: 65  TREERMERKRREKIERRQQEVETELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRR 124

Query: 162 EFESYGPIKRV 168
           EFE YGPIKR+
Sbjct: 125 EFEVYGPIKRI 132

[Close]
BLAST of CmoCh07G004960 vs. Swiss-Prot
Match: RU17_HUMAN (U1 small nuclear ribonucleoprotein 70 kDa OS=Homo sapiens GN=SNRNP70 PE=1 SV=2)

HSP 1 Score: 109.0 bits (271), Expect = 5.1e-23
Identity = 59/131 (45.04%), Postives = 78/131 (59.54%), Query Frame = 1 

Query: 42  LTANLLKLFEPRPPLEYKPP-----PEKRKCPPLTGMAQFVSHFAEPDDPEYAPPVQEGE 101
           L  NLL LF PR P+ Y PP      EK    P  G+A ++  F +P D   APP    E
Sbjct: 5   LPPNLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRD---APPPTRAE 64

Query: 102 TPSQRRARIHLLRIEKGAQKAVEELPKYLERDDPNVTGDPYKTLFVARLNYETSESRIKR 161
           T  +R  R    +IE+  Q+   EL  +   +DPN  GD +KTLFVAR+NY+T+ES+++R
Sbjct: 65  TREERMERKRREKIERRQQEVETELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRR 124

Query: 162 EFESYGPIKRV 168
           EFE YGPIKR+
Sbjct: 125 EFEVYGPIKRI 132

[Close]
BLAST of CmoCh07G004960 vs. Swiss-Prot
Match: RU17_MOUSE (U1 small nuclear ribonucleoprotein 70 kDa OS=Mus musculus GN=Snrnp70 PE=1 SV=2)

HSP 1 Score: 109.0 bits (271), Expect = 5.1e-23
Identity = 59/131 (45.04%), Postives = 78/131 (59.54%), Query Frame = 1 

Query: 42  LTANLLKLFEPRPPLEYKPP-----PEKRKCPPLTGMAQFVSHFAEPDDPEYAPPVQEGE 101
           L  NLL LF PR P+ Y PP      EK    P  G+A ++  F +P D   APP    E
Sbjct: 5   LPPNLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRD---APPPTRAE 64

Query: 102 TPSQRRARIHLLRIEKGAQKAVEELPKYLERDDPNVTGDPYKTLFVARLNYETSESRIKR 161
           T  +R  R    +IE+  Q+   EL  +   +DPN  GD +KTLFVAR+NY+T+ES+++R
Sbjct: 65  TREERMERKRREKIERRQQEVETELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRR 124

Query: 162 EFESYGPIKRV 168
           EFE YGPIKR+
Sbjct: 125 EFEVYGPIKRI 132

[Close]
BLAST of CmoCh07G004960 vs. Swiss-Prot
Match: RU17_XENLA (U1 small nuclear ribonucleoprotein 70 kDa OS=Xenopus laevis GN=snrnp70 PE=2 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 5.7e-22
Identity = 59/133 (44.36%), Postives = 77/133 (57.89%), Query Frame = 1 

Query: 42  LTANLLKLFEPRPPLEYKPP-----PEKRKCPPLTGMAQFVSHFAEPDDPEYAPPVQEGE 101
           L  NLL LF PR P+ Y PP      EK    P  G+A ++  F +P D   APP    E
Sbjct: 5   LPPNLLALFAPRDPVPYLPPLDKLPHEKHHNQPYCGIAPYIREFEDPRD---APPPTRAE 64

Query: 102 TPSQRRARIHLLRIEKGAQKAVEELPKYLERDDPNVTGDPYKTLFVARLNYETSESRIKR 161
           T  +R  R    +IE+  Q    EL  +   +D N  GD +KTLFVAR+NY+T+ES+++R
Sbjct: 65  TREERMERKRREKIERRQQDVENELKIWDPHNDQNAQGDAFKTLFVARVNYDTTESKLRR 124

Query: 162 EFESYGPIKRVGI 170
           EFE YGPIKR+ I
Sbjct: 125 EFEVYGPIKRIHI 134

[Close]
BLAST of CmoCh07G004960 vs. TrEMBL
Match: A0A0A0KGZ1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G502610 PE=4 SV=1)

HSP 1 Score: 327.8 bits (839), Expect = 7.8e-87
Identity = 159/167 (95.21%), Postives = 166/167 (99.40%), Query Frame = 1 

Query: 1   MGDYNDAFMRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLEYKP 60
           MGDYNDAFMRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLE+KP
Sbjct: 1   MGDYNDAFMRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLEFKP 60

Query: 61  PPEKRKCPPLTGMAQFVSHFAEPDDPEYAPPVQEGETPSQRRARIHLLRIEKGAQKAVEE 120
           PPEKRKCPPLTGMAQFVS+FAEPDDPEYAPPVQ+GETP++RRARIHLLRIEKGA+KA EE
Sbjct: 61  PPEKRKCPPLTGMAQFVSNFAEPDDPEYAPPVQKGETPTERRARIHLLRIEKGAEKAAEE 120

Query: 121 LPKYLERDDPNVTGDPYKTLFVARLNYETSESRIKREFESYGPIKRV 168
           LPKYLERDDPNVTGDPYKTLFVARLNYET+ESRIKREFESYGPIKRV
Sbjct: 121 LPKYLERDDPNVTGDPYKTLFVARLNYETTESRIKREFESYGPIKRV 167

[Close]
BLAST of CmoCh07G004960 vs. TrEMBL
Match: B9S6I9_RICCO (U1 small nuclear ribonucleoprotein 70 kDa, putative OS=Ricinus communis GN=RCOM_0536950 PE=4 SV=1)

HSP 1 Score: 298.9 bits (764), Expect = 3.9e-78
Identity = 145/167 (86.83%), Postives = 153/167 (91.62%), Query Frame = 1 

Query: 1   MGDYNDAFMRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLEYKP 60
           MGDYNDAFMRNQNAAV+  TK QNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLEYKP
Sbjct: 1   MGDYNDAFMRNQNAAVRGATKGQNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLEYKP 60

Query: 61  PPEKRKCPPLTGMAQFVSHFAEPDDPEYAPPVQEGETPSQRRARIHLLRIEKGAQKAVEE 120
           PPEKRKCPP TGMAQFV+ FAEP DPEYAPPVQE ETP+QRRARIH LR+EKGA+KA EE
Sbjct: 61  PPEKRKCPPYTGMAQFVTQFAEPGDPEYAPPVQEAETPTQRRARIHQLRLEKGAEKAAEE 120

Query: 121 LPKYLERDDPNVTGDPYKTLFVARLNYETSESRIKREFESYGPIKRV 168
           L KY    DPN++GDPYKTLFVARLNYET+ESRIKREFESYGPIKRV
Sbjct: 121 LQKYDPNSDPNISGDPYKTLFVARLNYETTESRIKREFESYGPIKRV 167

[Close]
BLAST of CmoCh07G004960 vs. TrEMBL
Match: V4SPA8_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10025502mg PE=4 SV=1)

HSP 1 Score: 298.5 bits (763), Expect = 5.1e-78
Identity = 146/167 (87.43%), Postives = 156/167 (93.41%), Query Frame = 1 

Query: 1   MGDYNDAFMRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLEYKP 60
           MGDYNDAFMRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPR PLEYKP
Sbjct: 1   MGDYNDAFMRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRAPLEYKP 60

Query: 61  PPEKRKCPPLTGMAQFVSHFAEPDDPEYAPPVQEGETPSQRRARIHLLRIEKGAQKAVEE 120
           PPEKRKCPPLTGMAQFVSHFAEP DP YAPPV++ ETP +RRARIH LR+EKGA+KA EE
Sbjct: 61  PPEKRKCPPLTGMAQFVSHFAEPGDPLYAPPVEKAETPVERRARIHKLRLEKGAEKAAEE 120

Query: 121 LPKYLERDDPNVTGDPYKTLFVARLNYETSESRIKREFESYGPIKRV 168
           L KY   +DPNV+GDPYKTLFVARL+YET+ES+IKREFESYGPIKRV
Sbjct: 121 LKKYDPHNDPNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRV 167

[Close]
BLAST of CmoCh07G004960 vs. TrEMBL
Match: A0A067GIN6_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g010771mg PE=4 SV=1)

HSP 1 Score: 298.5 bits (763), Expect = 5.1e-78
Identity = 146/167 (87.43%), Postives = 156/167 (93.41%), Query Frame = 1 

Query: 1   MGDYNDAFMRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLEYKP 60
           MGDYNDAFMRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPR PLEYKP
Sbjct: 1   MGDYNDAFMRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRAPLEYKP 60

Query: 61  PPEKRKCPPLTGMAQFVSHFAEPDDPEYAPPVQEGETPSQRRARIHLLRIEKGAQKAVEE 120
           PPEKRKCPPLTGMAQFVSHFAEP DP YAPPV++ ETP +RRARIH LR+EKGA+KA EE
Sbjct: 61  PPEKRKCPPLTGMAQFVSHFAEPGDPLYAPPVEKAETPVERRARIHKLRLEKGAEKAAEE 120

Query: 121 LPKYLERDDPNVTGDPYKTLFVARLNYETSESRIKREFESYGPIKRV 168
           L KY   +DPNV+GDPYKTLFVARL+YET+ES+IKREFESYGPIKRV
Sbjct: 121 LKKYDPHNDPNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRV 167

[Close]
BLAST of CmoCh07G004960 vs. TrEMBL
Match: V4SJA7_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10025502mg PE=4 SV=1)

HSP 1 Score: 298.5 bits (763), Expect = 5.1e-78
Identity = 146/167 (87.43%), Postives = 156/167 (93.41%), Query Frame = 1 

Query: 1   MGDYNDAFMRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLEYKP 60
           MGDYNDAFMRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPR PLEYKP
Sbjct: 1   MGDYNDAFMRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRAPLEYKP 60

Query: 61  PPEKRKCPPLTGMAQFVSHFAEPDDPEYAPPVQEGETPSQRRARIHLLRIEKGAQKAVEE 120
           PPEKRKCPPLTGMAQFVSHFAEP DP YAPPV++ ETP +RRARIH LR+EKGA+KA EE
Sbjct: 61  PPEKRKCPPLTGMAQFVSHFAEPGDPLYAPPVEKAETPVERRARIHKLRLEKGAEKAAEE 120

Query: 121 LPKYLERDDPNVTGDPYKTLFVARLNYETSESRIKREFESYGPIKRV 168
           L KY   +DPNV+GDPYKTLFVARL+YET+ES+IKREFESYGPIKRV
Sbjct: 121 LKKYDPHNDPNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRV 167

[Close]
BLAST of CmoCh07G004960 vs. TAIR10
Match: AT3G50670.1 (AT3G50670.1 U1 small nuclear ribonucleoprotein-70K)

HSP 1 Score: 274.6 bits (701), Expect = 4.0e-74
Identity = 134/167 (80.24%), Postives = 145/167 (86.83%), Query Frame = 1 

Query: 1   MGDYNDAFMRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLEYKP 60
           MGD  D F+RN NAAVQAR K QNRANVLQLKL+GQSHPTGLT NLLKLFEPRPPLEYKP
Sbjct: 1   MGDSGDPFLRNPNAAVQARAKVQNRANVLQLKLMGQSHPTGLTNNLLKLFEPRPPLEYKP 60

Query: 61  PPEKRKCPPLTGMAQFVSHFAEPDDPEYAPPVQEGETPSQRRARIHLLRIEKGAQKAVEE 120
           PPEKRKCPP TGMAQFVS+FAEP DPEYAPP  E E PSQ+R RIH LR+EKG +KA E+
Sbjct: 61  PPEKRKCPPYTGMAQFVSNFAEPGDPEYAPPKPEVELPSQKRERIHKLRLEKGVEKAAED 120

Query: 121 LPKYLERDDPNVTGDPYKTLFVARLNYETSESRIKREFESYGPIKRV 168
           L KY   +DPN TGDPYKTLFV+RLNYE+SES+IKREFESYGPIKRV
Sbjct: 121 LKKYDPNNDPNATGDPYKTLFVSRLNYESSESKIKREFESYGPIKRV 167

[Close]
BLAST of CmoCh07G004960 vs. NCBI nr
Match: gi|449451513|ref|XP_004143506.1| (PREDICTED: U1 small nuclear ribonucleoprotein 70 kDa [Cucumis sativus])

HSP 1 Score: 327.8 bits (839), Expect = 1.1e-86
Identity = 159/167 (95.21%), Postives = 166/167 (99.40%), Query Frame = 1 

Query: 1   MGDYNDAFMRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLEYKP 60
           MGDYNDAFMRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLE+KP
Sbjct: 1   MGDYNDAFMRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLEFKP 60

Query: 61  PPEKRKCPPLTGMAQFVSHFAEPDDPEYAPPVQEGETPSQRRARIHLLRIEKGAQKAVEE 120
           PPEKRKCPPLTGMAQFVS+FAEPDDPEYAPPVQ+GETP++RRARIHLLRIEKGA+KA EE
Sbjct: 61  PPEKRKCPPLTGMAQFVSNFAEPDDPEYAPPVQKGETPTERRARIHLLRIEKGAEKAAEE 120

Query: 121 LPKYLERDDPNVTGDPYKTLFVARLNYETSESRIKREFESYGPIKRV 168
           LPKYLERDDPNVTGDPYKTLFVARLNYET+ESRIKREFESYGPIKRV
Sbjct: 121 LPKYLERDDPNVTGDPYKTLFVARLNYETTESRIKREFESYGPIKRV 167

[Close]
BLAST of CmoCh07G004960 vs. NCBI nr
Match: gi|659080269|ref|XP_008440701.1| (PREDICTED: U1 small nuclear ribonucleoprotein 70 kDa [Cucumis melo])

HSP 1 Score: 327.8 bits (839), Expect = 1.1e-86
Identity = 159/167 (95.21%), Postives = 166/167 (99.40%), Query Frame = 1 

Query: 1   MGDYNDAFMRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLEYKP 60
           MGDYNDAFMRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLE+KP
Sbjct: 1   MGDYNDAFMRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLEFKP 60

Query: 61  PPEKRKCPPLTGMAQFVSHFAEPDDPEYAPPVQEGETPSQRRARIHLLRIEKGAQKAVEE 120
           PPEKRKCPPLTGMAQFVS+FAEPDDPEYAPPVQ+GETP++RRARIHLLRIEKGA+KA EE
Sbjct: 61  PPEKRKCPPLTGMAQFVSNFAEPDDPEYAPPVQKGETPAERRARIHLLRIEKGAEKAAEE 120

Query: 121 LPKYLERDDPNVTGDPYKTLFVARLNYETSESRIKREFESYGPIKRV 168
           LPKYLERDDPNVTGDPYKTLFVARLNYET+ESRIKREFESYGPIKRV
Sbjct: 121 LPKYLERDDPNVTGDPYKTLFVARLNYETTESRIKREFESYGPIKRV 167

[Close]
BLAST of CmoCh07G004960 vs. NCBI nr
Match: gi|255561192|ref|XP_002521608.1| (PREDICTED: U1 small nuclear ribonucleoprotein 70 kDa [Ricinus communis])

HSP 1 Score: 298.9 bits (764), Expect = 5.6e-78
Identity = 145/167 (86.83%), Postives = 153/167 (91.62%), Query Frame = 1 

Query: 1   MGDYNDAFMRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLEYKP 60
           MGDYNDAFMRNQNAAV+  TK QNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLEYKP
Sbjct: 1   MGDYNDAFMRNQNAAVRGATKGQNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLEYKP 60

Query: 61  PPEKRKCPPLTGMAQFVSHFAEPDDPEYAPPVQEGETPSQRRARIHLLRIEKGAQKAVEE 120
           PPEKRKCPP TGMAQFV+ FAEP DPEYAPPVQE ETP+QRRARIH LR+EKGA+KA EE
Sbjct: 61  PPEKRKCPPYTGMAQFVTQFAEPGDPEYAPPVQEAETPTQRRARIHQLRLEKGAEKAAEE 120

Query: 121 LPKYLERDDPNVTGDPYKTLFVARLNYETSESRIKREFESYGPIKRV 168
           L KY    DPN++GDPYKTLFVARLNYET+ESRIKREFESYGPIKRV
Sbjct: 121 LQKYDPNSDPNISGDPYKTLFVARLNYETTESRIKREFESYGPIKRV 167

[Close]
BLAST of CmoCh07G004960 vs. NCBI nr
Match: gi|567866145|ref|XP_006425695.1| (hypothetical protein CICLE_v10025502mg [Citrus clementina])

HSP 1 Score: 298.5 bits (763), Expect = 7.3e-78
Identity = 146/167 (87.43%), Postives = 156/167 (93.41%), Query Frame = 1 

Query: 1   MGDYNDAFMRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLEYKP 60
           MGDYNDAFMRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPR PLEYKP
Sbjct: 1   MGDYNDAFMRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRAPLEYKP 60

Query: 61  PPEKRKCPPLTGMAQFVSHFAEPDDPEYAPPVQEGETPSQRRARIHLLRIEKGAQKAVEE 120
           PPEKRKCPPLTGMAQFVSHFAEP DP YAPPV++ ETP +RRARIH LR+EKGA+KA EE
Sbjct: 61  PPEKRKCPPLTGMAQFVSHFAEPGDPLYAPPVEKAETPVERRARIHKLRLEKGAEKAAEE 120

Query: 121 LPKYLERDDPNVTGDPYKTLFVARLNYETSESRIKREFESYGPIKRV 168
           L KY   +DPNV+GDPYKTLFVARL+YET+ES+IKREFESYGPIKRV
Sbjct: 121 LKKYDPHNDPNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRV 167

[Close]
BLAST of CmoCh07G004960 vs. NCBI nr
Match: gi|1009145204|ref|XP_015890205.1| (PREDICTED: U1 small nuclear ribonucleoprotein 70 kDa isoform X1 [Ziziphus jujuba])

HSP 1 Score: 298.5 bits (763), Expect = 7.3e-78
Identity = 144/167 (86.23%), Postives = 157/167 (94.01%), Query Frame = 1 

Query: 1   MGDYNDAFMRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLEYKP 60
           MGDYNDAFMRNQN+AVQARTKAQNRANVLQLKLIGQSHPTGLT NLLKLFEPRPPLE+KP
Sbjct: 1   MGDYNDAFMRNQNSAVQARTKAQNRANVLQLKLIGQSHPTGLTNNLLKLFEPRPPLEFKP 60

Query: 61  PPEKRKCPPLTGMAQFVSHFAEPDDPEYAPPVQEGETPSQRRARIHLLRIEKGAQKAVEE 120
           PPEKRKCPPLTG+AQFVS FAEP DPEYAPPVQ+GETP +RRARIH LR+EKGA+KA EE
Sbjct: 61  PPEKRKCPPLTGVAQFVSKFAEPGDPEYAPPVQKGETPVERRARIHKLRLEKGAEKAAEE 120

Query: 121 LPKYLERDDPNVTGDPYKTLFVARLNYETSESRIKREFESYGPIKRV 168
           L KY   +DPNVTGDPYKTLFVARLNYET+ESRI+REF++YGPIKR+
Sbjct: 121 LEKYDPANDPNVTGDPYKTLFVARLNYETTESRIRREFDTYGPIKRI 167

The following BLAST results are available for this feature:
BLAST of CmoCh07G004960 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RU17_ARATH7.1e-7380.24U1 small nuclear ribonucleoprotein 70 kDa OS=Arabidopsis thaliana GN=RNU1 PE=1 S... [more]
RU17_BOVIN5.1e-2345.04U1 small nuclear ribonucleoprotein 70 kDa OS=Bos taurus GN=SNRNP70 PE=2 SV=1[more]
RU17_HUMAN5.1e-2345.04U1 small nuclear ribonucleoprotein 70 kDa OS=Homo sapiens GN=SNRNP70 PE=1 SV=2[more]
RU17_MOUSE5.1e-2345.04U1 small nuclear ribonucleoprotein 70 kDa OS=Mus musculus GN=Snrnp70 PE=1 SV=2[more]
RU17_XENLA5.7e-2244.36U1 small nuclear ribonucleoprotein 70 kDa OS=Xenopus laevis GN=snrnp70 PE=2 SV=1[more]
BLAST of CmoCh07G004960 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KGZ1_CUCSA7.8e-8795.21Uncharacterized protein OS=Cucumis sativus GN=Csa_6G502610 PE=4 SV=1[more]
B9S6I9_RICCO3.9e-7886.83U1 small nuclear ribonucleoprotein 70 kDa, putative OS=Ricinus communis GN=RCOM_... [more]
V4SPA8_9ROSI5.1e-7887.43Uncharacterized protein OS=Citrus clementina GN=CICLE_v10025502mg PE=4 SV=1[more]
A0A067GIN6_CITSI5.1e-7887.43Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g010771mg PE=4 SV=1[more]
V4SJA7_9ROSI5.1e-7887.43Uncharacterized protein OS=Citrus clementina GN=CICLE_v10025502mg PE=4 SV=1[more]
BLAST of CmoCh07G004960 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G50670.14.0e-7480.24 U1 small nuclear ribonucleoprotein-70K[more]
BLAST of CmoCh07G004960 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449451513|ref|XP_004143506.1|1.1e-8695.21PREDICTED: U1 small nuclear ribonucleoprotein 70 kDa [Cucumis sativus][more]
gi|659080269|ref|XP_008440701.1|1.1e-8695.21PREDICTED: U1 small nuclear ribonucleoprotein 70 kDa [Cucumis melo][more]
gi|255561192|ref|XP_002521608.1|5.6e-7886.83PREDICTED: U1 small nuclear ribonucleoprotein 70 kDa [Ricinus communis][more]
gi|567866145|ref|XP_006425695.1|7.3e-7887.43hypothetical protein CICLE_v10025502mg [Citrus clementina][more]
gi|1009145204|ref|XP_015890205.1|7.3e-7886.23PREDICTED: U1 small nuclear ribonucleoprotein 70 kDa isoform X1 [Ziziphus jujuba... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR012677Nucleotide-bd_a/b_plait_sf
IPR022023U1snRNP70_N
Vocabulary: Molecular Function
TermDefinition
GO:0000166nucleotide binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000398 mRNA splicing, via spliceosome
cellular_component GO:0030529 intracellular ribonucleoprotein complex
cellular_component GO:0005634 nucleus
cellular_component GO:0019013 viral nucleocapsid
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0000166 nucleotide binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh07G004960.1CmoCh07G004960.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012677Nucleotide-binding alpha-beta plait domainGENE3DG3DSA:3.30.70.330coord: 116..167
score: 2.
IPR012677Nucleotide-binding alpha-beta plait domainunknownSSF54928RNA-binding domain, RBDcoord: 127..167
score: 1.7
IPR022023U1 small nuclear ribonucleoprotein of 70kDa N-terminalPFAMPF12220U1snRNP70_Ncoord: 41..129
score: 4.5
NoneNo IPR availablePANTHERPTHR13952U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KDcoord: 32..167
score: 6.9

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh07G004960Silver-seed gourdcarcmoB0554
CmoCh07G004960Silver-seed gourdcarcmoB1029
CmoCh07G004960Silver-seed gourdcarcmoB1266
CmoCh07G004960Silver-seed gourdcarcmoB1321
CmoCh07G004960Cucumber (Chinese Long) v3cmocucB0994
CmoCh07G004960Cucumber (Chinese Long) v3cmocucB1019
CmoCh07G004960Watermelon (97103) v2cmowmbB849
CmoCh07G004960Watermelon (97103) v2cmowmbB874
CmoCh07G004960Wax gourdcmowgoB1065
CmoCh07G004960Melon (DHL92) v3.5.1cmomeB793
CmoCh07G004960Cucurbita moschata (Rifu)cmocmoB162
CmoCh07G004960Cucurbita moschata (Rifu)cmocmoB377
CmoCh07G004960Cucurbita moschata (Rifu)cmocmoB455
CmoCh07G004960Cucumber (Gy14) v1cgycmoB0338
CmoCh07G004960Cucumber (Gy14) v1cgycmoB0945
CmoCh07G004960Cucurbita maxima (Rimu)cmacmoB489
CmoCh07G004960Cucurbita maxima (Rimu)cmacmoB667
CmoCh07G004960Cucurbita maxima (Rimu)cmacmoB875
CmoCh07G004960Wild cucumber (PI 183967)cmocpiB855
CmoCh07G004960Wild cucumber (PI 183967)cmocpiB873
CmoCh07G004960Watermelon (Charleston Gray)cmowcgB755
CmoCh07G004960Cucumber (Chinese Long) v2cmocuB865
CmoCh07G004960Watermelon (Charleston Gray)cmowcgB773
CmoCh07G004960Watermelon (97103) v1cmowmB812
CmoCh07G004960Watermelon (97103) v1cmowmB816
CmoCh07G004960Cucurbita pepo (Zucchini)cmocpeB806
CmoCh07G004960Cucurbita pepo (Zucchini)cmocpeB813
CmoCh07G004960Cucurbita pepo (Zucchini)cmocpeB817
CmoCh07G004960Cucurbita pepo (Zucchini)cmocpeB819
CmoCh07G004960Bottle gourd (USVL1VR-Ls)cmolsiB774
CmoCh07G004960Bottle gourd (USVL1VR-Ls)cmolsiB794
CmoCh07G004960Cucumber (Gy14) v2cgybcmoB252
CmoCh07G004960Cucumber (Gy14) v2cgybcmoB843
CmoCh07G004960Melon (DHL92) v3.6.1cmomedB876
CmoCh07G004960Melon (DHL92) v3.6.1cmomedB896