CmoCh07G003080.1 (mRNA) Cucurbita moschata (Rifu)

Overview
NameCmoCh07G003080.1
TypemRNA
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionPeroxisomal membrane MPV17/PMP22-like protein
LocationCmo_Chr07 : 1486334 .. 1489876 (+)
Sequence length1148
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CCCCAAATGACCGCGATCTCTTGGTTCATTTTCCCTCGTGTTTTGGGGGTTGTTGGCAACCATGTGGCCCCCCGTCAAGCCACAGATATTTTGAAGAAGCGGACGATAAGATTTGATGAACTACAGTGATGAAAACGGAGTGTGTTAACTCAAACCTTCATCCCTGGGAGAAGAAGCTGAGAAAGAAACAATGTCTCTTGCGAAGAAGGCGTTTGAGAAGTATGTTTCGCAGCTTTACCAGCATCCTTTGAGAACCAAGGTGATTTCCCCTTTCCTTTATACTGAGATGTCTCGCTACTGGAAATTTGTAAGCTCTTAATCAGTTCCGTTCAGTGAGGTTTATAGCGACGGGGATTATGGAAGCTGAAACCCTTAAGTCATTACGGTGGAAGATAAATCAGACCCAATTTTGTTTTGTCCCAACCCGTTTTTTTTCTGTCACTCAACTCCCGTTATCTACTTCAGCGTCTACTGAACCTGTACCTTGCTGGGAAAGAGTAAAAAAGTGTCTCTTCGATTTTCACTGATGAAGGGACTTACTTGGGTTGGTGGAAGTAATAGTTATTGGCTTCATTTTCAAGATTAAAAGACCAAATTGTTATGAAACTGAGCCTTAGTTTTTCAAATACTTAGATGTTACTCAATAAATTGAGATTGATCTTGTCTGTTACCATACTTTGATTCATTGAAAAGTCCTTTGGGTTCCAGTTCTGTGAGGATTCTCTCCTTTCTATTTAAGGCTTAAGCTACGCCATTCTTGTTAAGGCACTCTTGTTAGATGTGTTCTTTTGTTGAATCAGGTAATCACTTCAGGAGTATTGATTGCGATAAGCGATGTGACTTCCCAGAAGCTTATTGGCATACAGAAACTTCAGTTGAGACGAATTCTTCTCAAAGTGGTATGGTCCTCTCTAGGTTCATTCTGAACAGTCTTTAACATTTGCTGCAAATCATCTCCCTTCTATACAAAAATAATAGTTTGAATACATAATCTTTGATGAGTATTCAATAAGCCCGTCTTGACAACCTCCTATTTTATGGGTCTATATGCATATGTTCACTGAAATTGGATAGTAGTTTATTTGTCTTCCATGCTTGTGTGTATTGTTGAAAGAAACATTGGTTCTTGCTCATGATTGGCTCATGCAGCTTTATGGATGTCTTTACCTTGGACCATTTGGCCATTTTCTTCACCAAATACTTGAAAAGATCTTCCAGGGGAAAAGAGACTCAAAAACAGTTGCCAAGAAGGTACACTGTCTGCTTCCATTTATTCTTTCTTTTGTACCAAGAATTGGGAGTAATTGATTTGATGTTTGCTATTGAATAAGAGCAGGCCCGTACTATCATGAGATCCCATTAGATTCTATTGGTAACCTACATTATTTAAATGATCATATGGCTGTATTGAAGAGGGATAATCGTATCATCAAGATAAAATGCTGTAGTATTGGAATTCCCCTGTAATGTCCCACATCGGTTACATTGGTTGGGGAGGAGAACAGAACACCATTTATAAGGGTATGGAAACCTCTAGCAGACGCGTTTTAAAGCCTCGAGGGGAAGCCCGAAAAGGAAAGCCCAAAAAGGACAATATCTGCTAGCGGTGGATCTGGGTCGTTACAAATGGTATCAGAGCCAGACACCGGACGATGTGTCAGCCAGCCTTCTTGCTGTTCCCCGAAGGGGGTAGACACGAAGCGATGTGCCAGTAGGTACGCTGGCCCCAAAGAGGGTGGATTGTGATATCCCACATTGGTTGGGGAGGAAACACCATTTATAAGGGTGTGGAAACCTTCTAGCAGAGGAAGCCCGAAAGGGAAAGTCCAAGGAGACAATGGATTTGGGTCGTTACATTCCCCAACAAAGGTTATCAAATAGTCATGGTCAATTGTTCGACCCAATTTGAGATTTATAAGTACATTTGCAATGAACTAAGCGAGATATGGGTGTTGGGTGTTAGAAACCACGGCCCTCCACGATGGTATGATATTTCCACTTTAAGCATAAGCTTTCATAGCTTTGCTTTCGGTTTCCCCAAAAGGCCTCGTACCAATGGAGATAGTGTTCCTTACTTATGAACCCATCATCTTCTTCTTAATGAACCAATGTGGGGCTACAACTCTCAATTATCCTCAACATTGGGGTTTGTCACGAATGTTGGATGTAATAAGTGAAAGTGTTAAACTCCTTATATATGACTTGTTTGGTTTTGTTCTCAGGTGCTGGTGGAACAGCTGACATCCTCTCCTTTGAGCCACTTTGTCTTCTTGGTTTATTACGGACTGATAATTGAAAGTGAGTATACTTCTCAACTTATCATATTAAAAAAGCAAGCATCTAAAAATATAAGTAAAATATTGTCCTAAAAGTTCATCTACTTCCCAGACCCCATTTTATTTATTTCAATAATAGCTTTAAGTTGATGGCGGGCACATGAAAAAAGGAAATAGAAAAAAAGGAGAAGCTTAAATAAAGGCAATGAATCTTGGTAGCTTTATCCAAACTCTTCTGTTATAGAATTCCCTTCAACCAAAGGTTCTAATCTCTATCCAAACTCTTCACTTAAACCTTAGGATGAAAGAAGAAAAAAAAAAACTTTGATTTGAGATGGAACTTTGTAAGATAGTTGTTAGATTATTTTATGATTTTCATAGCACTGAAGAACTTAAGATCTTTGCTTCTGTCTACTGGAAATTGAAATGCAGGAAGGCCTTGGGTCGTGGTAAAGGCTAAGGTTAAAAAGGAATTCCCGTCAGTTCAGCTAACTGCATGGATGGTATTTCCCTTTTCCCACTCATCATCTTTGCATTATTTTTCAACTCAAACTGGCCAGTTCTAATGCACTGAATCCCATTAGAACTCATTCATATTAATAGAGCCTATAAATTTTCAGTTCTGGCCATTTGTTGGTTGGATAAATCACCAGTACGTACCACTTCAGTTGCGTGTCATTTTCCATAGCCTGGTTGCATTCGTTTGGTACGTATACTTCGTCGGTCTCCTTTCCCTTCAATGGTTGGCGATTCTTTTGCAGTCTCCAGTTGCTAAAACCACCCTCAAACTTCTATTCTTTGGTTGTTTTCAGGGGAATATTTTTGAATCTTCGAGCCAAATCCTTGACGGTGAACAAATCTTAGGGGAGTTTAGGATATATGAATTGTCCATGGCAGGTGAAATCCATGCTCCTTAGTACTTATGTAAGCATTTGCCAATCATCACCCTCTTGTTTACCTTTACCCAGGAAATAGAAATTCGAAGACAATTATGATTGAGACGGTCGATTTCGATGATAATCATGTATATAATGATTATCTTAAACCAACTCGATATCAAACAAGATAAAAATGACATACTTGTAGTATATGTTGGAAAGAGGGACAGTGAAAGAGATAGGAATGGAAAGGAATAGATGAAAGCTGCAGTGCTCTATTATTGTCTACTAACTCGATACTTAGAGGGTTACACAATTCCAGTATTTATAGCTAATACACTGGACCAGCAATAGTAAATCATAGAAATCTAGATAAACTCAAATCTAAT

mRNA sequence

CCCCAAATGACCGCGATCTCTTGGTTCATTTTCCCTCGTGTTTTGGGGGTTGTTGGCAACCATGTGGCCCCCCGTCAAGCCACAGATATTTTGAAGAAGCGGACGATAAGATTTGATGAACTACAGTGATGAAAACGGAGTGTGTTAACTCAAACCTTCATCCCTGGGAGAAGAAGCTGAGAAAGAAACAATGTCTCTTGCGAAGAAGGCGTTTGAGAAGTATGTTTCGCAGCTTTACCAGCATCCTTTGAGAACCAAGGTAATCACTTCAGGAGTATTGATTGCGATAAGCGATGTGACTTCCCAGAAGCTTATTGGCATACAGAAACTTCAGTTGAGACGAATTCTTCTCAAAGTGCTTTATGGATGTCTTTACCTTGGACCATTTGGCCATTTTCTTCACCAAATACTTGAAAAGATCTTCCAGGGGAAAAGAGACTCAAAAACAGTTGCCAAGAAGGTGCTGGTGGAACAGCTGACATCCTCTCCTTTGAGCCACTTTGTCTTCTTGGTTTATTACGGACTGATAATTGAAAGAAGGCCTTGGGTCGTGGTAAAGGCTAAGGTTAAAAAGGAATTCCCGTCAGTTCAGCTAACTGCATGGATGTTCTGGCCATTTGTTGGTTGGATAAATCACCAGTACGTACCACTTCAGTTGCGTGTCATTTTCCATAGCCTGGTTGCATTCGTTTGGGGAATATTTTTGAATCTTCGAGCCAAATCCTTGACGGTGAACAAATCTTAGGGGAGTTTAGGATATATGAATTGTCCATGGCAGGTGAAATCCATGCTCCTTAGTACTTATGTAAGCATTTGCCAATCATCACCCTCTTGTTTACCTTTACCCAGGAAATAGAAATTCGAAGACAATTATGATTGAGACGGTCGATTTCGATGATAATCATGTATATAATGATTATCTTAAACCAACTCGATATCAAACAAGATAAAAATGACATACTTGTAGTATATGTTGGAAAGAGGGACAGTGAAAGAGATAGGAATGGAAAGGAATAGATGAAAGCTGCAGTGCTCTATTATTGTCTACTAACTCGATACTTAGAGGGTTACACAATTCCAGTATTTATAGCTAATACACTGGACCAGCAATAGTAAATCATAGAAATCTAGATAAACTCAAATCTAAT

Coding sequence (CDS)

ATGTCTCTTGCGAAGAAGGCGTTTGAGAAGTATGTTTCGCAGCTTTACCAGCATCCTTTGAGAACCAAGGTAATCACTTCAGGAGTATTGATTGCGATAAGCGATGTGACTTCCCAGAAGCTTATTGGCATACAGAAACTTCAGTTGAGACGAATTCTTCTCAAAGTGCTTTATGGATGTCTTTACCTTGGACCATTTGGCCATTTTCTTCACCAAATACTTGAAAAGATCTTCCAGGGGAAAAGAGACTCAAAAACAGTTGCCAAGAAGGTGCTGGTGGAACAGCTGACATCCTCTCCTTTGAGCCACTTTGTCTTCTTGGTTTATTACGGACTGATAATTGAAAGAAGGCCTTGGGTCGTGGTAAAGGCTAAGGTTAAAAAGGAATTCCCGTCAGTTCAGCTAACTGCATGGATGTTCTGGCCATTTGTTGGTTGGATAAATCACCAGTACGTACCACTTCAGTTGCGTGTCATTTTCCATAGCCTGGTTGCATTCGTTTGGGGAATATTTTTGAATCTTCGAGCCAAATCCTTGACGGTGAACAAATCTTAG
Homology
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BLAST of CmoCh07G003080.1 vs. Swiss-Prot
Match: PMP22_ARATH (Peroxisomal membrane protein PMP22 OS=Arabidopsis thaliana GN=PMP22 PE=1 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 5.0e-64
Identity = 112/177 (63.28%), Postives = 147/177 (83.05%), Query Frame = 1 

Query: 5   KKAFEKYVSQLYQHPLRTKVITSGVLIAISDVTSQKLIGIQKLQLRRILLKVLYGCLYLG 64
           K   ++Y+SQL QHPLRTK IT+GVL  +SDV SQKL GIQK+QLRR+LLKV++   +LG
Sbjct: 8   KTTLQRYLSQLQQHPLRTKAITAGVLSGVSDVVSQKLSGIQKIQLRRVLLKVIFAGGFLG 67

Query: 65  PFGHFLHQILEKIFQGKRDSKTVAKKVLVEQLTSSPLSHFVFLVYYGLIIERRPWVVVKA 124
           P GHF H  L+K F+GK+D++TVAKKV++EQLT SPL+H +F++YYG++IER PW +V+ 
Sbjct: 68  PAGHFFHTYLDKFFKGKKDTQTVAKKVILEQLTLSPLNHLLFMIYYGVVIERTPWTLVRE 127

Query: 125 KVKKEFPSVQLTAWMFWPFVGWINHQYVPLQLRVIFHSLVAFVWGIFLNLRAKSLTV 182
           ++KK +P+VQLTAW F+P VGWIN++YVPL  RVI HSLVAF WGIFL LRA+S+T+
Sbjct: 128 RIKKTYPTVQLTAWTFFPVVGWINYKYVPLHFRVILHSLVAFFWGIFLTLRARSMTL 184

[Close]
BLAST of CmoCh07G003080.1 vs. Swiss-Prot
Match: PX24C_DICDI (PXMP2/4 family protein 3 OS=Dictyostelium discoideum GN=DDB_G0290223 PE=3 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 5.4e-18
Identity = 56/178 (31.46%), Postives = 99/178 (55.62%), Query Frame = 1 

Query: 1   MSLAKKAFEKYVSQLYQHPLRTKVITSGVLIAISDVTSQKLIGIQKLQLRRILLKVLYGC 60
           +SL       Y+ +L   P++TK +TS  L  IS V +QK I  +K+    ++   ++G 
Sbjct: 7   LSLTDAVTTWYMKKLKSKPIQTKALTSATLSFISSVVAQKFIEKKKINWNAVVKFTVWG- 66

Query: 61  LYLGPFGHFLHQILEKIFQGKRDSKTVAKKVLVEQLTSSPLSHFVFLVYYGL--IIERRP 120
           L   P  H+ H IL+++F+  +D      K++V+QL  +P   F+ + +Y +  I++ +P
Sbjct: 67  LISSPLVHYWHIILDRLFKNIKDKYQSWGKLIVDQLVFAP---FINIAFYSVLAILDGKP 126

Query: 121 WVVVKAKVKKEFPSVQLTAWMFWPFVGWINHQYVPLQLRVIFHSLVAFVWGIFLNLRA 177
             ++       FP+++  +W  WP    IN ++VP  LRV+F +LV F WGI+L++ A
Sbjct: 127 KSILFKLYFDLFPTLK-ASWKVWPLAQLINFRFVPSHLRVLFGNLVGFCWGIYLSILA 179

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BLAST of CmoCh07G003080.1 vs. Swiss-Prot
Match: PX24D_DICDI (PXMP2/4 family protein 4 OS=Dictyostelium discoideum GN=DDB_G0290631 PE=3 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 2.8e-14
Identity = 53/175 (30.29%), Postives = 92/175 (52.57%), Query Frame = 1 

Query: 5   KKAFEKYVSQLYQHPLRTKVITSGVLIAISDVTSQKLIGIQ-------KLQLRRILLKVL 64
           K A   Y+SQL+++P+ TK +TSG L  ISD   Q   GI+       K   +R +   +
Sbjct: 9   KLAQSHYLSQLHKYPVATKAVTSGFLYLISDSLVQ---GIELSRDKDKKYDFKRSMRMAV 68

Query: 65  YGCLYLGPFGHFLHQILEKIFQGKRDSKTVAKKVLVEQLTSSPLSHFVFLVYYGLIIERR 124
           +G    GP  H+  + L+K F  K+  +    K+ ++Q+  SP+ +F+F    G I+E +
Sbjct: 69  FGFAVTGPLFHYWFKYLDKHFP-KKSYRHAFIKLTIDQVVCSPVFNFLFFSGMG-ILEGK 128

Query: 125 PWVVVKAKVKKEFPSVQLTAWMFWPFVGWINHQYVPLQLRVIFHSLVAFVWGIFL 173
               +  K+KK++ +  ++  + WPF+ ++N  Y+    RV F ++    WG FL
Sbjct: 129 SKDDIVEKLKKDWLTTYVSDCVVWPFINFVNFAYISSIHRVTFMNVCNIGWGAFL 178

[Close]
BLAST of CmoCh07G003080.1 vs. Swiss-Prot
Match: PX24B_DICDI (PXMP2/4 family protein 2 OS=Dictyostelium discoideum GN=DDB_G0278529 PE=3 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.1e-13
Identity = 50/176 (28.41%), Postives = 92/176 (52.27%), Query Frame = 1 

Query: 5   KKAFEKYVSQLYQHPLRTKVITSGVLIAISDVTSQKL-------IGIQKLQLRRILLKVL 64
           +K +  Y+  L  HPL TK +++G L+   D+ +Q+L           KL  +R+     
Sbjct: 2   RKLWGLYLGLLDNHPLVTKSLSTGFLMGTGDILAQRLEHKFKDEKSQFKLDYKRVATMST 61

Query: 65  YGCLYLGPFGHFLHQILEKIFQGKRDSKTVAKKVLVEQLTSSPLSHFVFLVYYGLIIERR 124
            G  Y GP  H+ ++ L+ + +G+  S  + KK+L++QL  +P++   F+     I  + 
Sbjct: 62  VGIFYSGPMLHYWYRSLDIMVKGEGRS-VIIKKMLIDQLLFAPVAIGGFMTVTNFINNKG 121

Query: 125 PWVVVKAKVKKEFPSVQLTAWMFWPFVGWINHQYVPLQLRVIFHSLVAFVWGIFLN 174
               ++   K+ F +V++  W+ WP    IN   VP  LRV++ S+++  WG+FL+
Sbjct: 122 ELKNLENFTKELFYAVKIN-WLIWPAAQIINFSLVPPNLRVLYSSIISIFWGMFLS 175

[Close]
BLAST of CmoCh07G003080.1 vs. Swiss-Prot
Match: PXMP2_MOUSE (Peroxisomal membrane protein 2 OS=Mus musculus GN=Pxmp2 PE=1 SV=2)

HSP 1 Score: 75.9 bits (185), Expect = 5.3e-13
Identity = 53/178 (29.78%), Postives = 101/178 (56.74%), Query Frame = 1 

Query: 2   SLAKKAFEKYVSQLYQHPLRTKVITSGVLIAISDVTSQKLIGIQK-----LQLRRILLKV 61
           SL K+A  +Y+  L  +P+ TK ++SG+L A+ ++ +Q +   Q+     L++  +L  +
Sbjct: 16  SLPKRALAQYLLLLKLYPVLTKAVSSGILSALGNLLAQTIEKKQRKDSRLLEVSGLLRYL 75

Query: 62  LYGCLYLGPFGHFLHQILEKIFQGKRDSKTVAKKVLVEQLTSSPLSHFVFLVYYGL-IIE 121
           +YG    GP  H+L+  +E     +    +V K++L+++L  +P   F+ L ++ + ++E
Sbjct: 76  VYGLFVTGPLSHYLYLFMEYSVPPEVPWASV-KRLLLDRLFFAPT--FLLLFFFVMNLLE 135

Query: 122 RRPWVVVKAKVKKEF-PSVQLTAWMFWPFVGWINHQYVPLQLRVIFHSLVAFVWGIFL 173
            +   V  AK++  F P++Q+  W  W  + +IN  YVPLQ RV+F ++ A  W  +L
Sbjct: 136 GKNVSVFVAKMRSGFWPALQMN-WRMWTPLQFININYVPLQFRVLFANMAALFWYAYL 189

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BLAST of CmoCh07G003080.1 vs. TrEMBL
Match: A0A0A0KJV4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G513580 PE=3 SV=1)

HSP 1 Score: 313.9 bits (803), Expect = 1.3e-82
Identity = 152/183 (83.06%), Postives = 169/183 (92.35%), Query Frame = 1 

Query: 2   SLAKKAFEKYVSQLYQHPLRTKVITSGVLIAISDVTSQKLIGIQKLQLRRILLKVLYGCL 61
           SLAKKA  KY+SQL  HPLRTKVITSGVL+A+SDVTSQKL GIQKLQL+RILLKVLYGCL
Sbjct: 3   SLAKKALNKYLSQLNHHPLRTKVITSGVLVALSDVTSQKLTGIQKLQLKRILLKVLYGCL 62

Query: 62  YLGPFGHFLHQILEKIFQGKRDSKTVAKKVLVEQLTSSPLSHFVFLVYYGLIIERRPWVV 121
           YLGPF H+LHQIL+KIF GKRD+KTVAKKV +EQLT+SP +HFVFLVYYGLIIE R WV 
Sbjct: 63  YLGPFAHYLHQILDKIFHGKRDTKTVAKKVALEQLTASPWNHFVFLVYYGLIIEGRTWVQ 122

Query: 122 VKAKVKKEFPSVQLTAWMFWPFVGWINHQYVPLQLRVIFHSLVAFVWGIFLNLRAKSLTV 181
           VKAKVKKEFPS+QLTAWMFWPFVGWINHQ++PLQ RVIFHSLVAF WG+FLN+RAKS+T+
Sbjct: 123 VKAKVKKEFPSLQLTAWMFWPFVGWINHQFMPLQFRVIFHSLVAFCWGLFLNVRAKSVTL 182

Query: 182 NKS 185
           NKS
Sbjct: 183 NKS 185

[Close]
BLAST of CmoCh07G003080.1 vs. TrEMBL
Match: M5X2M8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012030mg PE=3 SV=1)

HSP 1 Score: 276.2 bits (705), Expect = 2.9e-71
Identity = 129/183 (70.49%), Postives = 160/183 (87.43%), Query Frame = 1 

Query: 2   SLAKKAFEKYVSQLYQHPLRTKVITSGVLIAISDVTSQKLIGIQKLQLRRILLKVLYGCL 61
           S+AKK  ++Y+ QL  HPLRTK IT+GVL AISD+ SQKL GIQKLQLRR+LLKVL+G +
Sbjct: 3   SIAKKGLQQYLLQLQHHPLRTKAITAGVLSAISDIVSQKLTGIQKLQLRRLLLKVLFGAV 62

Query: 62  YLGPFGHFLHQILEKIFQGKRDSKTVAKKVLVEQLTSSPLSHFVFLVYYGLIIERRPWVV 121
           YLGPFGHFLH IL+KIF+GK+DSKTVAKKVLVEQLTSSP ++ +F++YYGL++E RPW+ 
Sbjct: 63  YLGPFGHFLHLILDKIFKGKKDSKTVAKKVLVEQLTSSPWNNLLFMLYYGLVVEGRPWMH 122

Query: 122 VKAKVKKEFPSVQLTAWMFWPFVGWINHQYVPLQLRVIFHSLVAFVWGIFLNLRAKSLTV 181
           VK K+KK++PSVQ T+W FWP +GWINHQYVPL LRV+FHSLVAF WGIFLNL+A+S+ +
Sbjct: 123 VKNKIKKDYPSVQYTSWTFWPVLGWINHQYVPLHLRVVFHSLVAFGWGIFLNLQARSVAL 182

Query: 182 NKS 185
            K+
Sbjct: 183 PKA 185

[Close]
BLAST of CmoCh07G003080.1 vs. TrEMBL
Match: A0A151T6U9_CAJCA (Peroxisomal membrane protein PMP22 OS=Cajanus cajan GN=KK1_017299 PE=3 SV=1)

HSP 1 Score: 275.4 bits (703), Expect = 5.0e-71
Identity = 127/183 (69.40%), Postives = 157/183 (85.79%), Query Frame = 1 

Query: 2   SLAKKAFEKYVSQLYQHPLRTKVITSGVLIAISDVTSQKLIGIQKLQLRRILLKVLYGCL 61
           SLAKK    YV QL  HPLRTKVIT+GVL AISD+ SQKL GI KLQ++R+LLKV++G  
Sbjct: 3   SLAKKGLNNYVKQLQHHPLRTKVITAGVLSAISDIVSQKLTGIHKLQVKRLLLKVVFGAA 62

Query: 62  YLGPFGHFLHQILEKIFQGKRDSKTVAKKVLVEQLTSSPLSHFVFLVYYGLIIERRPWVV 121
           YLGPFGH+ H +L+KIF+GK+DSKTVAKKVL+EQLTSSP ++F+FL+YYGL++E RPWV 
Sbjct: 63  YLGPFGHYFHLMLDKIFKGKKDSKTVAKKVLIEQLTSSPWNNFLFLIYYGLVVEGRPWVH 122

Query: 122 VKAKVKKEFPSVQLTAWMFWPFVGWINHQYVPLQLRVIFHSLVAFVWGIFLNLRAKSLTV 181
           VKAKVKK++PSVQ T+W FWP VGWINH+++PL  RV+FHSLVAF WGIFLNLRA+S+ +
Sbjct: 123 VKAKVKKDYPSVQYTSWTFWPVVGWINHKFLPLHFRVVFHSLVAFCWGIFLNLRARSMAL 182

Query: 182 NKS 185
            K+
Sbjct: 183 TKA 185

[Close]
BLAST of CmoCh07G003080.1 vs. TrEMBL
Match: A0A067JML1_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21195 PE=3 SV=1)

HSP 1 Score: 274.2 bits (700), Expect = 1.1e-70
Identity = 127/182 (69.78%), Postives = 159/182 (87.36%), Query Frame = 1 

Query: 2   SLAKKAFEKYVSQLYQHPLRTKVITSGVLIAISDVTSQKLIGIQKLQLRRILLKVLYGCL 61
           S+AKK  ++Y+ QL +HPLRTK IT+GVL AISD+ +QKL GIQKLQLRR+LLKVL+G  
Sbjct: 3   SVAKKGLQQYLLQLQRHPLRTKAITAGVLSAISDIVAQKLSGIQKLQLRRLLLKVLFGFA 62

Query: 62  YLGPFGHFLHQILEKIFQGKRDSKTVAKKVLVEQLTSSPLSHFVFLVYYGLIIERRPWVV 121
           YLGPFGHFLH IL+KIF+GK+D++TVAKKVL+EQLTSSP ++ +F++YYG+I+ERRPW+ 
Sbjct: 63  YLGPFGHFLHIILDKIFKGKKDTQTVAKKVLLEQLTSSPWNNMLFMIYYGVIVERRPWMH 122

Query: 122 VKAKVKKEFPSVQLTAWMFWPFVGWINHQYVPLQLRVIFHSLVAFVWGIFLNLRAKSLTV 181
           VK K+KKE+P+VQ T+W FWP VGWINHQYVPLQ RVIFHS++A  WGIFLNLRAKS+ +
Sbjct: 123 VKTKIKKEYPTVQFTSWTFWPVVGWINHQYVPLQFRVIFHSVIACCWGIFLNLRAKSMAL 182

Query: 182 NK 184
            K
Sbjct: 183 TK 184

[Close]
BLAST of CmoCh07G003080.1 vs. TrEMBL
Match: V4UAG0_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016857mg PE=3 SV=1)

HSP 1 Score: 271.6 bits (693), Expect = 7.3e-70
Identity = 125/183 (68.31%), Postives = 157/183 (85.79%), Query Frame = 1 

Query: 2   SLAKKAFEKYVSQLYQHPLRTKVITSGVLIAISDVTSQKLIGIQKLQLRRILLKVLYGCL 61
           S+AKK  ++Y+ QL QHPLRTK IT+GVL AISD+ +QKL GIQKLQLRR+LLKVL+GC 
Sbjct: 3   SIAKKGLQQYLIQLQQHPLRTKAITAGVLSAISDIVAQKLTGIQKLQLRRLLLKVLFGCA 62

Query: 62  YLGPFGHFLHQILEKIFQGKRDSKTVAKKVLVEQLTSSPLSHFVFLVYYGLIIERRPWVV 121
           YLGPFGHFLH IL+KIF+GK+D+ TVAKKV++EQLTSSP ++ +F++YYG+++E RPW  
Sbjct: 63  YLGPFGHFLHLILDKIFKGKKDTSTVAKKVVLEQLTSSPWNNLMFMIYYGVVVEGRPWRD 122

Query: 122 VKAKVKKEFPSVQLTAWMFWPFVGWINHQYVPLQLRVIFHSLVAFVWGIFLNLRAKSLTV 181
           VK K+KK++P+VQ T+W FWP VGWINH YVPLQ RVIFHSLVA  WGIFLNLRA+S+ +
Sbjct: 123 VKTKIKKDYPTVQYTSWTFWPVVGWINHLYVPLQFRVIFHSLVAMCWGIFLNLRARSMAL 182

Query: 182 NKS 185
            K+
Sbjct: 183 PKA 185

[Close]
BLAST of CmoCh07G003080.1 vs. TAIR10
Match: AT4G04470.1 (AT4G04470.1 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein)

HSP 1 Score: 245.4 bits (625), Expect = 2.8e-65
Identity = 112/177 (63.28%), Postives = 147/177 (83.05%), Query Frame = 1 

Query: 5   KKAFEKYVSQLYQHPLRTKVITSGVLIAISDVTSQKLIGIQKLQLRRILLKVLYGCLYLG 64
           K   ++Y+SQL QHPLRTK IT+GVL  +SDV SQKL GIQK+QLRR+LLKV++   +LG
Sbjct: 8   KTTLQRYLSQLQQHPLRTKAITAGVLSGVSDVVSQKLSGIQKIQLRRVLLKVIFAGGFLG 67

Query: 65  PFGHFLHQILEKIFQGKRDSKTVAKKVLVEQLTSSPLSHFVFLVYYGLIIERRPWVVVKA 124
           P GHF H  L+K F+GK+D++TVAKKV++EQLT SPL+H +F++YYG++IER PW +V+ 
Sbjct: 68  PAGHFFHTYLDKFFKGKKDTQTVAKKVILEQLTLSPLNHLLFMIYYGVVIERTPWTLVRE 127

Query: 125 KVKKEFPSVQLTAWMFWPFVGWINHQYVPLQLRVIFHSLVAFVWGIFLNLRAKSLTV 182
           ++KK +P+VQLTAW F+P VGWIN++YVPL  RVI HSLVAF WGIFL LRA+S+T+
Sbjct: 128 RIKKTYPTVQLTAWTFFPVVGWINYKYVPLHFRVILHSLVAFFWGIFLTLRARSMTL 184

[Close]
BLAST of CmoCh07G003080.1 vs. TAIR10
Match: AT4G14305.1 (AT4G14305.1 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein)

HSP 1 Score: 232.3 bits (591), Expect = 2.5e-61
Identity = 105/182 (57.69%), Postives = 143/182 (78.57%), Query Frame = 1 

Query: 3   LAKKAFEKYVSQLYQHPLRTKVITSGVLIAISDVTSQKLIGIQKLQLRRILLKVLYGCLY 62
           LAK A+ KY+ QL  HPLRTK IT+GVL   SD  +QK+ G++++Q RR+LL +LYG  Y
Sbjct: 4   LAKDAWRKYLIQLQAHPLRTKAITAGVLAGCSDAIAQKISGVKRIQFRRLLLLMLYGFAY 63

Query: 63  LGPFGHFLHQILEKIFQGKRDSKTVAKKVLVEQLTSSPLSHFVFLVYYGLIIERRPWVVV 122
            GPFGHF H++++ IF+GK+ + TVAKKVL+EQLTSSP ++F+F+ YYGL++E RPW +V
Sbjct: 64  GGPFGHFFHKLMDTIFKGKKGNSTVAKKVLLEQLTSSPWNNFLFMSYYGLVVEGRPWKLV 123

Query: 123 KAKVKKEFPSVQLTAWMFWPFVGWINHQYVPLQLRVIFHSLVAFVWGIFLNLRAKSLTVN 182
           K K+ K++P++QLTAW FWP VGW+N+QYVPLQ RV+F S VA  W IFLNL+A+S  + 
Sbjct: 124 KHKLGKDYPTIQLTAWKFWPIVGWVNYQYVPLQFRVLFSSFVASCWSIFLNLKARSPVIK 183

Query: 183 KS 185
            +
Sbjct: 184 NA 185

[Close]
BLAST of CmoCh07G003080.1 vs. NCBI nr
Match: gi|449433976|ref|XP_004134772.1| (PREDICTED: peroxisomal membrane protein PMP22 [Cucumis sativus])

HSP 1 Score: 313.9 bits (803), Expect = 1.8e-82
Identity = 152/183 (83.06%), Postives = 169/183 (92.35%), Query Frame = 1 

Query: 2   SLAKKAFEKYVSQLYQHPLRTKVITSGVLIAISDVTSQKLIGIQKLQLRRILLKVLYGCL 61
           SLAKKA  KY+SQL  HPLRTKVITSGVL+A+SDVTSQKL GIQKLQL+RILLKVLYGCL
Sbjct: 3   SLAKKALNKYLSQLNHHPLRTKVITSGVLVALSDVTSQKLTGIQKLQLKRILLKVLYGCL 62

Query: 62  YLGPFGHFLHQILEKIFQGKRDSKTVAKKVLVEQLTSSPLSHFVFLVYYGLIIERRPWVV 121
           YLGPF H+LHQIL+KIF GKRD+KTVAKKV +EQLT+SP +HFVFLVYYGLIIE R WV 
Sbjct: 63  YLGPFAHYLHQILDKIFHGKRDTKTVAKKVALEQLTASPWNHFVFLVYYGLIIEGRTWVQ 122

Query: 122 VKAKVKKEFPSVQLTAWMFWPFVGWINHQYVPLQLRVIFHSLVAFVWGIFLNLRAKSLTV 181
           VKAKVKKEFPS+QLTAWMFWPFVGWINHQ++PLQ RVIFHSLVAF WG+FLN+RAKS+T+
Sbjct: 123 VKAKVKKEFPSLQLTAWMFWPFVGWINHQFMPLQFRVIFHSLVAFCWGLFLNVRAKSVTL 182

Query: 182 NKS 185
           NKS
Sbjct: 183 NKS 185

[Close]
BLAST of CmoCh07G003080.1 vs. NCBI nr
Match: gi|659078996|ref|XP_008440019.1| (PREDICTED: peroxisomal membrane protein PMP22 [Cucumis melo])

HSP 1 Score: 313.5 bits (802), Expect = 2.4e-82
Identity = 152/183 (83.06%), Postives = 169/183 (92.35%), Query Frame = 1 

Query: 2   SLAKKAFEKYVSQLYQHPLRTKVITSGVLIAISDVTSQKLIGIQKLQLRRILLKVLYGCL 61
           SLAKK   KY+SQL QHPLRTKVITSGVL+A+SDVTSQKL GIQKLQL+RILLKVLYGCL
Sbjct: 3   SLAKKGLNKYLSQLNQHPLRTKVITSGVLVALSDVTSQKLTGIQKLQLKRILLKVLYGCL 62

Query: 62  YLGPFGHFLHQILEKIFQGKRDSKTVAKKVLVEQLTSSPLSHFVFLVYYGLIIERRPWVV 121
           YLGPF H+LHQIL+KIF GKRD+KTVAKKV +EQLT+SP +HFVFLVYYGLIIE R WV 
Sbjct: 63  YLGPFSHYLHQILDKIFHGKRDTKTVAKKVALEQLTASPWNHFVFLVYYGLIIEGRTWVQ 122

Query: 122 VKAKVKKEFPSVQLTAWMFWPFVGWINHQYVPLQLRVIFHSLVAFVWGIFLNLRAKSLTV 181
           VKAKVKKEFPS+QLTAWMFWPFVGWINHQ++PLQLRVIFHSLVAF WG+FLN+RAKS+T+
Sbjct: 123 VKAKVKKEFPSLQLTAWMFWPFVGWINHQFMPLQLRVIFHSLVAFCWGLFLNVRAKSVTL 182

Query: 182 NKS 185
            KS
Sbjct: 183 KKS 185

[Close]
BLAST of CmoCh07G003080.1 vs. NCBI nr
Match: gi|595874565|ref|XP_007212121.1| (hypothetical protein PRUPE_ppa012030mg [Prunus persica])

HSP 1 Score: 276.2 bits (705), Expect = 4.2e-71
Identity = 129/183 (70.49%), Postives = 160/183 (87.43%), Query Frame = 1 

Query: 2   SLAKKAFEKYVSQLYQHPLRTKVITSGVLIAISDVTSQKLIGIQKLQLRRILLKVLYGCL 61
           S+AKK  ++Y+ QL  HPLRTK IT+GVL AISD+ SQKL GIQKLQLRR+LLKVL+G +
Sbjct: 3   SIAKKGLQQYLLQLQHHPLRTKAITAGVLSAISDIVSQKLTGIQKLQLRRLLLKVLFGAV 62

Query: 62  YLGPFGHFLHQILEKIFQGKRDSKTVAKKVLVEQLTSSPLSHFVFLVYYGLIIERRPWVV 121
           YLGPFGHFLH IL+KIF+GK+DSKTVAKKVLVEQLTSSP ++ +F++YYGL++E RPW+ 
Sbjct: 63  YLGPFGHFLHLILDKIFKGKKDSKTVAKKVLVEQLTSSPWNNLLFMLYYGLVVEGRPWMH 122

Query: 122 VKAKVKKEFPSVQLTAWMFWPFVGWINHQYVPLQLRVIFHSLVAFVWGIFLNLRAKSLTV 181
           VK K+KK++PSVQ T+W FWP +GWINHQYVPL LRV+FHSLVAF WGIFLNL+A+S+ +
Sbjct: 123 VKNKIKKDYPSVQYTSWTFWPVLGWINHQYVPLHLRVVFHSLVAFGWGIFLNLQARSVAL 182

Query: 182 NKS 185
            K+
Sbjct: 183 PKA 185

[Close]
BLAST of CmoCh07G003080.1 vs. NCBI nr
Match: gi|645236354|ref|XP_008224695.1| (PREDICTED: peroxisomal membrane protein PMP22 [Prunus mume])

HSP 1 Score: 275.8 bits (704), Expect = 5.5e-71
Identity = 129/183 (70.49%), Postives = 159/183 (86.89%), Query Frame = 1 

Query: 2   SLAKKAFEKYVSQLYQHPLRTKVITSGVLIAISDVTSQKLIGIQKLQLRRILLKVLYGCL 61
           S+AKK  ++Y+ QL  HPLRTK IT+GVL AISD+ SQKL GIQKLQLRR+LLKVL+G +
Sbjct: 3   SIAKKGLQQYLLQLQHHPLRTKAITAGVLSAISDIVSQKLTGIQKLQLRRLLLKVLFGAV 62

Query: 62  YLGPFGHFLHQILEKIFQGKRDSKTVAKKVLVEQLTSSPLSHFVFLVYYGLIIERRPWVV 121
           YLGPFGHFLH IL+KIF+GK+DSKTVAKKVLVEQLTSSP ++ +F++YYGL++E RPW  
Sbjct: 63  YLGPFGHFLHLILDKIFKGKKDSKTVAKKVLVEQLTSSPWNNLLFMLYYGLVVEGRPWTH 122

Query: 122 VKAKVKKEFPSVQLTAWMFWPFVGWINHQYVPLQLRVIFHSLVAFVWGIFLNLRAKSLTV 181
           VK K+KK++PSVQ T+W FWP +GWINHQYVPL LRV+FHSLVAF WGIFLNL+A+S+ +
Sbjct: 123 VKNKIKKDYPSVQYTSWTFWPVLGWINHQYVPLHLRVVFHSLVAFGWGIFLNLQARSVAL 182

Query: 182 NKS 185
            K+
Sbjct: 183 PKA 185

[Close]
BLAST of CmoCh07G003080.1 vs. NCBI nr
Match: gi|1012351562|gb|KYP62751.1| (Peroxisomal membrane protein PMP22 [Cajanus cajan])

HSP 1 Score: 275.4 bits (703), Expect = 7.2e-71
Identity = 127/183 (69.40%), Postives = 157/183 (85.79%), Query Frame = 1 

Query: 2   SLAKKAFEKYVSQLYQHPLRTKVITSGVLIAISDVTSQKLIGIQKLQLRRILLKVLYGCL 61
           SLAKK    YV QL  HPLRTKVIT+GVL AISD+ SQKL GI KLQ++R+LLKV++G  
Sbjct: 3   SLAKKGLNNYVKQLQHHPLRTKVITAGVLSAISDIVSQKLTGIHKLQVKRLLLKVVFGAA 62

Query: 62  YLGPFGHFLHQILEKIFQGKRDSKTVAKKVLVEQLTSSPLSHFVFLVYYGLIIERRPWVV 121
           YLGPFGH+ H +L+KIF+GK+DSKTVAKKVL+EQLTSSP ++F+FL+YYGL++E RPWV 
Sbjct: 63  YLGPFGHYFHLMLDKIFKGKKDSKTVAKKVLIEQLTSSPWNNFLFLIYYGLVVEGRPWVH 122

Query: 122 VKAKVKKEFPSVQLTAWMFWPFVGWINHQYVPLQLRVIFHSLVAFVWGIFLNLRAKSLTV 181
           VKAKVKK++PSVQ T+W FWP VGWINH+++PL  RV+FHSLVAF WGIFLNLRA+S+ +
Sbjct: 123 VKAKVKKDYPSVQYTSWTFWPVVGWINHKFLPLHFRVVFHSLVAFCWGIFLNLRARSMAL 182

Query: 182 NKS 185
            K+
Sbjct: 183 TKA 185

The following BLAST results are available for this feature:
BLAST of CmoCh07G003080.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PMP22_ARATH5.0e-6463.28Peroxisomal membrane protein PMP22 OS=Arabidopsis thaliana GN=PMP22 PE=1 SV=1[more]
PX24C_DICDI5.4e-1831.46PXMP2/4 family protein 3 OS=Dictyostelium discoideum GN=DDB_G0290223 PE=3 SV=1[more]
PX24D_DICDI2.8e-1430.29PXMP2/4 family protein 4 OS=Dictyostelium discoideum GN=DDB_G0290631 PE=3 SV=1[more]
PX24B_DICDI1.1e-1328.41PXMP2/4 family protein 2 OS=Dictyostelium discoideum GN=DDB_G0278529 PE=3 SV=1[more]
PXMP2_MOUSE5.3e-1329.78Peroxisomal membrane protein 2 OS=Mus musculus GN=Pxmp2 PE=1 SV=2[more]
BLAST of CmoCh07G003080.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KJV4_CUCSA1.3e-8283.06Uncharacterized protein OS=Cucumis sativus GN=Csa_6G513580 PE=3 SV=1[more]
M5X2M8_PRUPE2.9e-7170.49Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012030mg PE=3 SV=1[more]
A0A151T6U9_CAJCA5.0e-7169.40Peroxisomal membrane protein PMP22 OS=Cajanus cajan GN=KK1_017299 PE=3 SV=1[more]
A0A067JML1_JATCU1.1e-7069.78Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21195 PE=3 SV=1[more]
V4UAG0_9ROSI7.3e-7068.31Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016857mg PE=3 SV=1[more]
BLAST of CmoCh07G003080.1 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G04470.12.8e-6563.28 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein[more]
AT4G14305.12.5e-6157.69 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein[more]
BLAST of CmoCh07G003080.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449433976|ref|XP_004134772.1|1.8e-8283.06PREDICTED: peroxisomal membrane protein PMP22 [Cucumis sativus][more]
gi|659078996|ref|XP_008440019.1|2.4e-8283.06PREDICTED: peroxisomal membrane protein PMP22 [Cucumis melo][more]
gi|595874565|ref|XP_007212121.1|4.2e-7170.49hypothetical protein PRUPE_ppa012030mg [Prunus persica][more]
gi|645236354|ref|XP_008224695.1|5.5e-7170.49PREDICTED: peroxisomal membrane protein PMP22 [Prunus mume][more]
gi|1012351562|gb|KYP62751.1|7.2e-7169.40Peroxisomal membrane protein PMP22 [Cajanus cajan][more]
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR007248Mpv17_PMP22
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmoCh07G003080CmoCh07G003080gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmoCh07G003080.1CmoCh07G003080.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh07G003080.1.exon.1CmoCh07G003080.1.exon.1exon
CmoCh07G003080.1.exon.2CmoCh07G003080.1.exon.2exon
CmoCh07G003080.1.exon.3CmoCh07G003080.1.exon.3exon
CmoCh07G003080.1.exon.4CmoCh07G003080.1.exon.4exon
CmoCh07G003080.1.exon.5CmoCh07G003080.1.exon.5exon
CmoCh07G003080.1.exon.6CmoCh07G003080.1.exon.6exon
CmoCh07G003080.1.exon.7CmoCh07G003080.1.exon.7exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh07G003080.1.five_prime_UTR.1CmoCh07G003080.1.five_prime_UTR.1five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh07G003080.1.CDS.1CmoCh07G003080.1.CDS.1CDS
CmoCh07G003080.1.CDS.2CmoCh07G003080.1.CDS.2CDS
CmoCh07G003080.1.CDS.3CmoCh07G003080.1.CDS.3CDS
CmoCh07G003080.1.CDS.4CmoCh07G003080.1.CDS.4CDS
CmoCh07G003080.1.CDS.5CmoCh07G003080.1.CDS.5CDS
CmoCh07G003080.1.CDS.6CmoCh07G003080.1.CDS.6CDS
CmoCh07G003080.1.CDS.7CmoCh07G003080.1.CDS.7CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh07G003080.1.three_prime_UTR.1CmoCh07G003080.1.three_prime_UTR.1three_prime_UTR


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007248Mpv17/PMP22PANTHERPTHR11266PEROXISOMAL MEMBRANE PROTEIN 2, PXMP2 MPV17coord: 2..178
score: 1.1E
IPR007248Mpv17/PMP22PFAMPF04117Mpv17_PMP22coord: 113..172
score: 5.7
NoneNo IPR availablePANTHERPTHR11266:SF15PEROXISOMAL MEMBRANE PROTEIN PMP22coord: 2..178
score: 1.1E