CmoCh07G003080 (gene) Cucurbita moschata (Rifu)
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CCCCAAATGACCGCGATCTCTTGGTTCATTTTCCCTCGTGTTTTGGGGGTTGTTGGCAACCATGTGGCCCCCCGTCAAGCCACAGATATTTTGAAGAAGCGGACGATAAGATTTGATGAACTACAGTGATGAAAACGGAGTGTGTTAACTCAAACCTTCATCCCTGGGAGAAGAAGCTGAGAAAGAAACAATGTCTCTTGCGAAGAAGGCGTTTGAGAAGTATGTTTCGCAGCTTTACCAGCATCCTTTGAGAACCAAGGTGATTTCCCCTTTCCTTTATACTGAGATGTCTCGCTACTGGAAATTTGTAAGCTCTTAATCAGTTCCGTTCAGTGAGGTTTATAGCGACGGGGATTATGGAAGCTGAAACCCTTAAGTCATTACGGTGGAAGATAAATCAGACCCAATTTTGTTTTGTCCCAACCCGTTTTTTTTCTGTCACTCAACTCCCGTTATCTACTTCAGCGTCTACTGAACCTGTACCTTGCTGGGAAAGAGTAAAAAAGTGTCTCTTCGATTTTCACTGATGAAGGGACTTACTTGGGTTGGTGGAAGTAATAGTTATTGGCTTCATTTTCAAGATTAAAAGACCAAATTGTTATGAAACTGAGCCTTAGTTTTTCAAATACTTAGATGTTACTCAATAAATTGAGATTGATCTTGTCTGTTACCATACTTTGATTCATTGAAAAGTCCTTTGGGTTCCAGTTCTGTGAGGATTCTCTCCTTTCTATTTAAGGCTTAAGCTACGCCATTCTTGTTAAGGCACTCTTGTTAGATGTGTTCTTTTGTTGAATCAGGTAATCACTTCAGGAGTATTGATTGCGATAAGCGATGTGACTTCCCAGAAGCTTATTGGCATACAGAAACTTCAGTTGAGACGAATTCTTCTCAAAGTGGTATGGTCCTCTCTAGGTTCATTCTGAACAGTCTTTAACATTTGCTGCAAATCATCTCCCTTCTATACAAAAATAATAGTTTGAATACATAATCTTTGATGAGTATTCAATAAGCCCGTCTTGACAACCTCCTATTTTATGGGTCTATATGCATATGTTCACTGAAATTGGATAGTAGTTTATTTGTCTTCCATGCTTGTGTGTATTGTTGAAAGAAACATTGGTTCTTGCTCATGATTGGCTCATGCAGCTTTATGGATGTCTTTACCTTGGACCATTTGGCCATTTTCTTCACCAAATACTTGAAAAGATCTTCCAGGGGAAAAGAGACTCAAAAACAGTTGCCAAGAAGGTACACTGTCTGCTTCCATTTATTCTTTCTTTTGTACCAAGAATTGGGAGTAATTGATTTGATGTTTGCTATTGAATAAGAGCAGGCCCGTACTATCATGAGATCCCATTAGATTCTATTGGTAACCTACATTATTTAAATGATCATATGGCTGTATTGAAGAGGGATAATCGTATCATCAAGATAAAATGCTGTAGTATTGGAATTCCCCTGTAATGTCCCACATCGGTTACATTGGTTGGGGAGGAGAACAGAACACCATTTATAAGGGTATGGAAACCTCTAGCAGACGCGTTTTAAAGCCTCGAGGGGAAGCCCGAAAAGGAAAGCCCAAAAAGGACAATATCTGCTAGCGGTGGATCTGGGTCGTTACAAATGGTATCAGAGCCAGACACCGGACGATGTGTCAGCCAGCCTTCTTGCTGTTCCCCGAAGGGGGTAGACACGAAGCGATGTGCCAGTAGGTACGCTGGCCCCAAAGAGGGTGGATTGTGATATCCCACATTGGTTGGGGAGGAAACACCATTTATAAGGGTGTGGAAACCTTCTAGCAGAGGAAGCCCGAAAGGGAAAGTCCAAGGAGACAATGGATTTGGGTCGTTACATTCCCCAACAAAGGTTATCAAATAGTCATGGTCAATTGTTCGACCCAATTTGAGATTTATAAGTACATTTGCAATGAACTAAGCGAGATATGGGTGTTGGGTGTTAGAAACCACGGCCCTCCACGATGGTATGATATTTCCACTTTAAGCATAAGCTTTCATAGCTTTGCTTTCGGTTTCCCCAAAAGGCCTCGTACCAATGGAGATAGTGTTCCTTACTTATGAACCCATCATCTTCTTCTTAATGAACCAATGTGGGGCTACAACTCTCAATTATCCTCAACATTGGGGTTTGTCACGAATGTTGGATGTAATAAGTGAAAGTGTTAAACTCCTTATATATGACTTGTTTGGTTTTGTTCTCAGGTGCTGGTGGAACAGCTGACATCCTCTCCTTTGAGCCACTTTGTCTTCTTGGTTTATTACGGACTGATAATTGAAAGTGAGTATACTTCTCAACTTATCATATTAAAAAAGCAAGCATCTAAAAATATAAGTAAAATATTGTCCTAAAAGTTCATCTACTTCCCAGACCCCATTTTATTTATTTCAATAATAGCTTTAAGTTGATGGCGGGCACATGAAAAAAGGAAATAGAAAAAAAGGAGAAGCTTAAATAAAGGCAATGAATCTTGGTAGCTTTATCCAAACTCTTCTGTTATAGAATTCCCTTCAACCAAAGGTTCTAATCTCTATCCAAACTCTTCACTTAAACCTTAGGATGAAAGAAGAAAAAAAAAAACTTTGATTTGAGATGGAACTTTGTAAGATAGTTGTTAGATTATTTTATGATTTTCATAGCACTGAAGAACTTAAGATCTTTGCTTCTGTCTACTGGAAATTGAAATGCAGGAAGGCCTTGGGTCGTGGTAAAGGCTAAGGTTAAAAAGGAATTCCCGTCAGTTCAGCTAACTGCATGGATGGTATTTCCCTTTTCCCACTCATCATCTTTGCATTATTTTTCAACTCAAACTGGCCAGTTCTAATGCACTGAATCCCATTAGAACTCATTCATATTAATAGAGCCTATAAATTTTCAGTTCTGGCCATTTGTTGGTTGGATAAATCACCAGTACGTACCACTTCAGTTGCGTGTCATTTTCCATAGCCTGGTTGCATTCGTTTGGTACGTATACTTCGTCGGTCTCCTTTCCCTTCAATGGTTGGCGATTCTTTTGCAGTCTCCAGTTGCTAAAACCACCCTCAAACTTCTATTCTTTGGTTGTTTTCAGGGGAATATTTTTGAATCTTCGAGCCAAATCCTTGACGGTGAACAAATCTTAGGGGAGTTTAGGATATATGAATTGTCCATGGCAGGTGAAATCCATGCTCCTTAGTACTTATGTAAGCATTTGCCAATCATCACCCTCTTGTTTACCTTTACCCAGGAAATAGAAATTCGAAGACAATTATGATTGAGACGGTCGATTTCGATGATAATCATGTATATAATGATTATCTTAAACCAACTCGATATCAAACAAGATAAAAATGACATACTTGTAGTATATGTTGGAAAGAGGGACAGTGAAAGAGATAGGAATGGAAAGGAATAGATGAAAGCTGCAGTGCTCTATTATTGTCTACTAACTCGATACTTAGAGGGTTACACAATTCCAGTATTTATAGCTAATACACTGGACCAGCAATAGTAAATCATAGAAATCTAGATAAACTCAAATCTAAT CCCCAAATGACCGCGATCTCTTGGTTCATTTTCCCTCGTGTTTTGGGGGTTGTTGGCAACCATGTGGCCCCCCGTCAAGCCACAGATATTTTGAAGAAGCGGACGATAAGATTTGATGAACTACAGTGATGAAAACGGAGTGTGTTAACTCAAACCTTCATCCCTGGGAGAAGAAGCTGAGAAAGAAACAATGTCTCTTGCGAAGAAGGCGTTTGAGAAGTATGTTTCGCAGCTTTACCAGCATCCTTTGAGAACCAAGGTAATCACTTCAGGAGTATTGATTGCGATAAGCGATGTGACTTCCCAGAAGCTTATTGGCATACAGAAACTTCAGTTGAGACGAATTCTTCTCAAAGTGCTTTATGGATGTCTTTACCTTGGACCATTTGGCCATTTTCTTCACCAAATACTTGAAAAGATCTTCCAGGGGAAAAGAGACTCAAAAACAGTTGCCAAGAAGGTGCTGGTGGAACAGCTGACATCCTCTCCTTTGAGCCACTTTGTCTTCTTGGTTTATTACGGACTGATAATTGAAAGAAGGCCTTGGGTCGTGGTAAAGGCTAAGGTTAAAAAGGAATTCCCGTCAGTTCAGCTAACTGCATGGATGTTCTGGCCATTTGTTGGTTGGATAAATCACCAGTACGTACCACTTCAGTTGCGTGTCATTTTCCATAGCCTGGTTGCATTCGTTTGGGGAATATTTTTGAATCTTCGAGCCAAATCCTTGACGGTGAACAAATCTTAGGGGAGTTTAGGATATATGAATTGTCCATGGCAGGTGAAATCCATGCTCCTTAGTACTTATGTAAGCATTTGCCAATCATCACCCTCTTGTTTACCTTTACCCAGGAAATAGAAATTCGAAGACAATTATGATTGAGACGGTCGATTTCGATGATAATCATGTATATAATGATTATCTTAAACCAACTCGATATCAAACAAGATAAAAATGACATACTTGTAGTATATGTTGGAAAGAGGGACAGTGAAAGAGATAGGAATGGAAAGGAATAGATGAAAGCTGCAGTGCTCTATTATTGTCTACTAACTCGATACTTAGAGGGTTACACAATTCCAGTATTTATAGCTAATACACTGGACCAGCAATAGTAAATCATAGAAATCTAGATAAACTCAAATCTAAT ATGTCTCTTGCGAAGAAGGCGTTTGAGAAGTATGTTTCGCAGCTTTACCAGCATCCTTTGAGAACCAAGGTAATCACTTCAGGAGTATTGATTGCGATAAGCGATGTGACTTCCCAGAAGCTTATTGGCATACAGAAACTTCAGTTGAGACGAATTCTTCTCAAAGTGCTTTATGGATGTCTTTACCTTGGACCATTTGGCCATTTTCTTCACCAAATACTTGAAAAGATCTTCCAGGGGAAAAGAGACTCAAAAACAGTTGCCAAGAAGGTGCTGGTGGAACAGCTGACATCCTCTCCTTTGAGCCACTTTGTCTTCTTGGTTTATTACGGACTGATAATTGAAAGAAGGCCTTGGGTCGTGGTAAAGGCTAAGGTTAAAAAGGAATTCCCGTCAGTTCAGCTAACTGCATGGATGTTCTGGCCATTTGTTGGTTGGATAAATCACCAGTACGTACCACTTCAGTTGCGTGTCATTTTCCATAGCCTGGTTGCATTCGTTTGGGGAATATTTTTGAATCTTCGAGCCAAATCCTTGACGGTGAACAAATCTTAG
BLAST of CmoCh07G003080 vs. Swiss-Prot
Match: PMP22_ARATH (Peroxisomal membrane protein PMP22 OS=Arabidopsis thaliana GN=PMP22 PE=1 SV=1) HSP 1 Score: 245.4 bits (625), Expect = 5.0e-64 Identity = 112/177 (63.28%), Postives = 147/177 (83.05%), Query Frame = 1
BLAST of CmoCh07G003080 vs. Swiss-Prot
Match: PX24C_DICDI (PXMP2/4 family protein 3 OS=Dictyostelium discoideum GN=DDB_G0290223 PE=3 SV=1) HSP 1 Score: 92.4 bits (228), Expect = 5.4e-18 Identity = 56/178 (31.46%), Postives = 99/178 (55.62%), Query Frame = 1
BLAST of CmoCh07G003080 vs. Swiss-Prot
Match: PX24D_DICDI (PXMP2/4 family protein 4 OS=Dictyostelium discoideum GN=DDB_G0290631 PE=3 SV=1) HSP 1 Score: 80.1 bits (196), Expect = 2.8e-14 Identity = 53/175 (30.29%), Postives = 92/175 (52.57%), Query Frame = 1
BLAST of CmoCh07G003080 vs. Swiss-Prot
Match: PX24B_DICDI (PXMP2/4 family protein 2 OS=Dictyostelium discoideum GN=DDB_G0278529 PE=3 SV=1) HSP 1 Score: 78.2 bits (191), Expect = 1.1e-13 Identity = 50/176 (28.41%), Postives = 92/176 (52.27%), Query Frame = 1
BLAST of CmoCh07G003080 vs. Swiss-Prot
Match: PXMP2_MOUSE (Peroxisomal membrane protein 2 OS=Mus musculus GN=Pxmp2 PE=1 SV=2) HSP 1 Score: 75.9 bits (185), Expect = 5.3e-13 Identity = 53/178 (29.78%), Postives = 101/178 (56.74%), Query Frame = 1
BLAST of CmoCh07G003080 vs. TrEMBL
Match: A0A0A0KJV4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G513580 PE=3 SV=1) HSP 1 Score: 313.9 bits (803), Expect = 1.3e-82 Identity = 152/183 (83.06%), Postives = 169/183 (92.35%), Query Frame = 1
BLAST of CmoCh07G003080 vs. TrEMBL
Match: M5X2M8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012030mg PE=3 SV=1) HSP 1 Score: 276.2 bits (705), Expect = 2.9e-71 Identity = 129/183 (70.49%), Postives = 160/183 (87.43%), Query Frame = 1
BLAST of CmoCh07G003080 vs. TrEMBL
Match: A0A151T6U9_CAJCA (Peroxisomal membrane protein PMP22 OS=Cajanus cajan GN=KK1_017299 PE=3 SV=1) HSP 1 Score: 275.4 bits (703), Expect = 5.0e-71 Identity = 127/183 (69.40%), Postives = 157/183 (85.79%), Query Frame = 1
BLAST of CmoCh07G003080 vs. TrEMBL
Match: A0A067JML1_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21195 PE=3 SV=1) HSP 1 Score: 274.2 bits (700), Expect = 1.1e-70 Identity = 127/182 (69.78%), Postives = 159/182 (87.36%), Query Frame = 1
BLAST of CmoCh07G003080 vs. TrEMBL
Match: V4UAG0_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016857mg PE=3 SV=1) HSP 1 Score: 271.6 bits (693), Expect = 7.3e-70 Identity = 125/183 (68.31%), Postives = 157/183 (85.79%), Query Frame = 1
BLAST of CmoCh07G003080 vs. TAIR10
Match: AT4G04470.1 (AT4G04470.1 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein) HSP 1 Score: 245.4 bits (625), Expect = 2.8e-65 Identity = 112/177 (63.28%), Postives = 147/177 (83.05%), Query Frame = 1
BLAST of CmoCh07G003080 vs. TAIR10
Match: AT4G14305.1 (AT4G14305.1 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein) HSP 1 Score: 232.3 bits (591), Expect = 2.5e-61 Identity = 105/182 (57.69%), Postives = 143/182 (78.57%), Query Frame = 1
BLAST of CmoCh07G003080 vs. NCBI nr
Match: gi|449433976|ref|XP_004134772.1| (PREDICTED: peroxisomal membrane protein PMP22 [Cucumis sativus]) HSP 1 Score: 313.9 bits (803), Expect = 1.8e-82 Identity = 152/183 (83.06%), Postives = 169/183 (92.35%), Query Frame = 1
BLAST of CmoCh07G003080 vs. NCBI nr
Match: gi|659078996|ref|XP_008440019.1| (PREDICTED: peroxisomal membrane protein PMP22 [Cucumis melo]) HSP 1 Score: 313.5 bits (802), Expect = 2.4e-82 Identity = 152/183 (83.06%), Postives = 169/183 (92.35%), Query Frame = 1
BLAST of CmoCh07G003080 vs. NCBI nr
Match: gi|595874565|ref|XP_007212121.1| (hypothetical protein PRUPE_ppa012030mg [Prunus persica]) HSP 1 Score: 276.2 bits (705), Expect = 4.2e-71 Identity = 129/183 (70.49%), Postives = 160/183 (87.43%), Query Frame = 1
BLAST of CmoCh07G003080 vs. NCBI nr
Match: gi|645236354|ref|XP_008224695.1| (PREDICTED: peroxisomal membrane protein PMP22 [Prunus mume]) HSP 1 Score: 275.8 bits (704), Expect = 5.5e-71 Identity = 129/183 (70.49%), Postives = 159/183 (86.89%), Query Frame = 1
BLAST of CmoCh07G003080 vs. NCBI nr
Match: gi|1012351562|gb|KYP62751.1| (Peroxisomal membrane protein PMP22 [Cajanus cajan]) HSP 1 Score: 275.4 bits (703), Expect = 7.2e-71 Identity = 127/183 (69.40%), Postives = 157/183 (85.79%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |