CmoCh05G001370.1 (mRNA) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh05G001370.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Unknown protein
Location	Cmo_Chr05 : 597682 .. 599676 (-)
Sequence length	1198

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GTAAGCCGGCAGTATCATCTTCAGAGTTGCCTCTTTCAACTGCTCCCGCAAATCCAAATCTGGAATGCAATACGCGGTTCTGTGTTTATGTGAGAATTCCCTTAGAGCCTTCACGAATGCTTCCATTTTTGTTTTCGCTAATTCTTCCACGGTTTCCTTGTTCGGTAATCGCACGTCTTCCATGTCCATTACTGAAAGCAAGGGCTCCCAACATAGCATTTGGTAAGTGTAAGCCGATTCCTCTGCCACTGCTTTGTAATTCTTTCTCATATACTGTTCTCCTAGAAATCTTCCTAGTTCCGTGTTTCGGATCCGCATGTAGATGTACCAGTATGTGTTCATTGAGAAGATATGCGGTAGGATTTTGTCTCTGTAGCGCGATTTTTTGGATTCCACGTTTCTTTGTAGGGCTTCCATTACGTTAGAGAAGGCGTCTTTGAGGAGATTATCCTCGTCTTCCGATTTCAAAACGACTCCGCCCTTCCATGATTTCTGTATTTGGAGAACTTTGGTCATGGCGAAACTGTAGTTGTCACTTGCAAGGTACTTGAGGTAGTTGACGGCGTATCTGACTAGTTTTGGAACCGAGCCGTCTTTTGGAGGAGGAAAGCCATCTGAATTGCCCTCAATTTGAAGGCCGAAGTCCCAAAATACTTTGCTGGACGCGTGTACAAGTAGCTTCTCCAGCTCTCTGTATCGTGTGCGAATTTCTGTGCCAGCTTCGCCGCCGAATGCCTCAGAGAATTCGGAGTTGAGTTCTTCCATGGAGGCGAACATGTCCAAGAGCTTGAACAGTTTCTGCGGCTCTTTTGTGCTTCTGGCGACGCCTTCCCCAAATCGGAAGAAGACGGCCATGATTTTGTCCGCGATCTTCACGAAGCATTCAGGCCACATCAGTCCATCCATGATGGAGCCTAAAACTTGGCTACAGAGTTTCTTCTCGGAAACCAACACGCTCGTGGCTGCGACCTTGAAGTGTTCAATCCACAGAGAAATTGCTGTCTCCAACTTTTCCCACTCCATTTTGTCAATTTCTTCTGGAGTGTATGTTTTGAGATAGACTGGATTCAGCCGCATCAATGTCGTAGCTGCTCTTCTGTATCTAACCTGATTTATGAACGCTAGTTATAGAATTTGGCTGCAATTTTTTCTTACTAAAAGGAAAAAGAAAAGGAAAATATGTTATTTACCTTGACGTAAATATTGATGCAAATATCCAAACAATCGTTGGCAGCGAGGGTTTCAGAAATTCGTTTGGCAGCTTCGATCTCCAACTCGGTACCCATTTCAAACCCCACTGCTTCACCTTCTTTTTCTGCTTCACCATCTTCAAACTTGGGTTTTCTTTGACGCTTTAGATTCTTTAATATGTTTTCAAATTCATCTTGCAGATTAAGCAAAGCTTCGTCAAGCAACCCCTCAAACTTCATGTCGTCAATTTCTGTTTCGTATAGAGCTTTGAGAGTGATCATCGTCTCTTTCAGTCTGTGTGTCCGCTGTGAATCAGCAGCCTTCGTCCTGCTCAAGAACTCTACCACCTCTTGAAGTTTCTGGATCACCGATTCCCCCTCTCGGCTAATCATGCTTATTGATTCATTCAGTCTATCCACACAGTTTACTAGTTTGATCAGCTTCTTCAGACGTTCCTGTGCCGATTTTTCCACCGATAAATTGGCGAAGATCGCGAGAATCTTGCGTTGGAGAAACTCGGATCGCTTAAAGGAATCAAGCAGAACGAGAGCAGGCGAAGCTGCACGATTGATTCTCGTTTCAAGGGCTTTTGTCGTCATCGCCAATGATTGTAGAGGTATTATGCTTCTCGATGCTGTCGCGAGCGATTCGTCGATTGAATCAAGATTCTTCTCCATCTTCTCTAGGCTATCGTTCAATCCCGTCGAGGCTTGGAGGAGGATTTTCAAATCCGAGCATGCTGATTCGAGCTTCTCCATCCTCGAGTCCTCCTCCTCCCTCGGCGCCATTGTTACTACTCCTTGA

mRNA sequence

GTAAGCCGGCAGTATCATCTTCAGAGTTGCCTCTTTCAACTGCTCCCGCAAATCCAAATCTGGAATGCAATACGCGGTTCTGTGTTTATGTGAGAATTCCCTTAGAGCCTTCACGAATGCTTCCATTTTTGTTTTCGCTAATTCTTCCACGGTTTCCTTGTTCGGTAATCGCACGTCTTCCATGTCCATTACTGAAAGCAAGGGCTCCCAACATAGCATTTGGGCTTCCATTACGTTAGAGAAGGCGTCTTTGAGGAGATTATCCTCGTCTTCCGATTTCAAAACGACTCCGCCCTTCCATGATTTCTGTATTTGGAGAACTTTGGTCATGGCGAAACTGCCGAAGTCCCAAAATACTTTGCTGGACGCGTGTACAAGTAGCTTCTCCAGCTCTCTGTATCGTGTGCGAATTTCTGTGCCAGCTTCGCCGCCGAATGCCTCAGAGAATTCGGAGTTGAGTTCTTCCATGGAGGCGAACATGTCCAAGAGCTTGAACAGTTTCTGCGGCTCTTTTGTGCTTCTGGCGACGCCTTCCCCAAATCGGAAGAAGACGGCCATGATTTTGTCCGCGATCTTCACGAAGCATTCAGGCCACATCAGTCCATCCATGATGGAGCCTAAAACTTGGCTACAGAGTTTCTTCTCGGAAACCAACACGCTCGTGGCTGCGACCTTGAAGTGTTCAATCCACAGAGAAATTGCTGTCTCCAACTTTTCCCACTCCATTTTGTCAATTTCTTCTGGAGTATTAAGCAAAGCTTCGTCAAGCAACCCCTCAAACTTCATGTCGTCAATTTCTGTTTCGTATAGAGCTTTGAGAGTGATCATCGTCTCTTTCAGTCTACGTTCCTGTGCCGATTTTTCCACCGATAAATTGGCGAAGATCGCGAGAATCTTGCGTTGGAGAAACTCGGATCGCTTAAAGGAATCAAGCAGAACGAGAGCAGGCGAAGCTGCACGATTGATTCTCGTTTCAAGGGCTTTTGTCGTCATCGCCAATGATTGTAGAGGTATTATGCTTCTCGATGCTGTCGCGAGCGATTCGTCGATTGAATCAAGATTCTTCTCCATCTTCTCTAGGCTATCGTTCAATCCCGTCGAGGCTTGGAGGAGGATTTTCAAATCCGAGCATGCTGATTCGAGCTTCTCCATCCTCGAGTCCTCCTCCTCCCTCGGCGCCATTGTTACTACTCCTTGA

Coding sequence (CDS)

ATGCAATACGCGGTTCTGTGTTTATGTGAGAATTCCCTTAGAGCCTTCACGAATGCTTCCATTTTTGTTTTCGCTAATTCTTCCACGGTTTCCTTGTTCGGTAATCGCACGTCTTCCATGTCCATTACTGAAAGCAAGGGCTCCCAACATAGCATTTGGGCTTCCATTACGTTAGAGAAGGCGTCTTTGAGGAGATTATCCTCGTCTTCCGATTTCAAAACGACTCCGCCCTTCCATGATTTCTGTATTTGGAGAACTTTGGTCATGGCGAAACTGCCGAAGTCCCAAAATACTTTGCTGGACGCGTGTACAAGTAGCTTCTCCAGCTCTCTGTATCGTGTGCGAATTTCTGTGCCAGCTTCGCCGCCGAATGCCTCAGAGAATTCGGAGTTGAGTTCTTCCATGGAGGCGAACATGTCCAAGAGCTTGAACAGTTTCTGCGGCTCTTTTGTGCTTCTGGCGACGCCTTCCCCAAATCGGAAGAAGACGGCCATGATTTTGTCCGCGATCTTCACGAAGCATTCAGGCCACATCAGTCCATCCATGATGGAGCCTAAAACTTGGCTACAGAGTTTCTTCTCGGAAACCAACACGCTCGTGGCTGCGACCTTGAAGTGTTCAATCCACAGAGAAATTGCTGTCTCCAACTTTTCCCACTCCATTTTGTCAATTTCTTCTGGAGTATTAAGCAAAGCTTCGTCAAGCAACCCCTCAAACTTCATGTCGTCAATTTCTGTTTCGTATAGAGCTTTGAGAGTGATCATCGTCTCTTTCAGTCTACGTTCCTGTGCCGATTTTTCCACCGATAAATTGGCGAAGATCGCGAGAATCTTGCGTTGGAGAAACTCGGATCGCTTAAAGGAATCAAGCAGAACGAGAGCAGGCGAAGCTGCACGATTGATTCTCGTTTCAAGGGCTTTTGTCGTCATCGCCAATGATTGTAGAGGTATTATGCTTCTCGATGCTGTCGCGAGCGATTCGTCGATTGAATCAAGATTCTTCTCCATCTTCTCTAGGCTATCGTTCAATCCCGTCGAGGCTTGGAGGAGGATTTTCAAATCCGAGCATGCTGATTCGAGCTTCTCCATCCTCGAGTCCTCCTCCTCCCTCGGCGCCATTGTTACTACTCCTTGA

Homology

[Close]

BLAST of CmoCh05G001370.1 vs. TrEMBL
Match: A0A0S3RGG8_PHAAN (Uncharacterized protein (Fragment) OS=Vigna angularis var. angularis GN=Vigan.02G267900 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 2.3e-17
Identity = 57/112 (50.89%), Postives = 67/112 (59.82%), Query Frame = 1


Query: 95  SQNTLLDACTSSFSSSLYRVRISVPASPPNASENSELSSSMEANMSKSLNSFCGSFVLLA 154
           S  TLL+A   SFS+S  RV +S P SP    +   LS S ++N S SL SF GSF+L A
Sbjct: 56  SHKTLLEASIMSFSNSRNRVHMSAPGSPSKICDIWGLSFSRDSNTSNSLKSFWGSFLLRA 115

Query: 155 TPSPNRKKTAMILSAIFTKHSGHISPSMMEPKTWLQSFFSETNTLVAATLKC 207
            PSP RK T  ILS I  KHSG   PSM  P+T+ QS FSE  T +  T KC
Sbjct: 116 PPSPKRKNTTKILSEILMKHSGQTRPSMKSPRTFSQSLFSENKTFLITTSKC 167

[Close]

BLAST of CmoCh05G001370.1 vs. NCBI nr
Match: gi|965664043|dbj|BAT79752.1| (hypothetical protein VIGAN_02267900, partial [Vigna angularis var. angularis])

HSP 1 Score: 98.2 bits (243), Expect = 3.2e-17
Identity = 57/112 (50.89%), Postives = 67/112 (59.82%), Query Frame = 1


Query: 95  SQNTLLDACTSSFSSSLYRVRISVPASPPNASENSELSSSMEANMSKSLNSFCGSFVLLA 154
           S  TLL+A   SFS+S  RV +S P SP    +   LS S ++N S SL SF GSF+L A
Sbjct: 56  SHKTLLEASIMSFSNSRNRVHMSAPGSPSKICDIWGLSFSRDSNTSNSLKSFWGSFLLRA 115

Query: 155 TPSPNRKKTAMILSAIFTKHSGHISPSMMEPKTWLQSFFSETNTLVAATLKC 207
            PSP RK T  ILS I  KHSG   PSM  P+T+ QS FSE  T +  T KC
Sbjct: 116 PPSPKRKNTTKILSEILMKHSGQTRPSMKSPRTFSQSLFSENKTFLITTSKC 167

The following BLAST results are available for this feature:

BLAST of CmoCh05G001370.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh05G001370.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0S3RGG8_PHAAN	2.3e-17	50.89	Uncharacterized protein (Fragment) OS=Vigna angularis var. angularis GN=Vigan.02...	[more]

BLAST of CmoCh05G001370.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh05G001370.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|965664043\|dbj\|BAT79752.1\|	3.2e-17	50.89	hypothetical protein VIGAN_02267900, partial [Vigna angularis var. angularis]	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh05G001370	CmoCh05G001370	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh05G001370.1	CmoCh05G001370.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh05G001370.1.CDS.5	CmoCh05G001370.1.CDS.5	CDS
CmoCh05G001370.1.CDS.4	CmoCh05G001370.1.CDS.4	CDS
CmoCh05G001370.1.CDS.3	CmoCh05G001370.1.CDS.3	CDS
CmoCh05G001370.1.CDS.2	CmoCh05G001370.1.CDS.2	CDS
CmoCh05G001370.1.CDS.1	CmoCh05G001370.1.CDS.1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh05G001370.1.five_prime_UTR.1	CmoCh05G001370.1.five_prime_UTR.1	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh05G001370.1.exon.5	CmoCh05G001370.1.exon.5	exon
CmoCh05G001370.1.exon.4	CmoCh05G001370.1.exon.4	exon
CmoCh05G001370.1.exon.3	CmoCh05G001370.1.exon.3	exon
CmoCh05G001370.1.exon.2	CmoCh05G001370.1.exon.2	exon
CmoCh05G001370.1.exon.1	CmoCh05G001370.1.exon.1	exon