CmoCh05G001370 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh05G001370
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr05 : 597682 .. 599676 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GTAAGCCGGCAGTATCATCTTCAGAGTTGCCTCTTTCAACTGCTCCCGCAAATCCAAATCTGGAATGCAATACGCGGTTCTGTGTTTATGTGAGAATTCCCTTAGAGCCTTCACGAATGCTTCCATTTTTGTTTTCGCTAATTCTTCCACGGTTTCCTTGTTCGGTAATCGCACGTCTTCCATGTCCATTACTGAAAGCAAGGGCTCCCAACATAGCATTTGGTAAGTGTAAGCCGATTCCTCTGCCACTGCTTTGTAATTCTTTCTCATATACTGTTCTCCTAGAAATCTTCCTAGTTCCGTGTTTCGGATCCGCATGTAGATGTACCAGTATGTGTTCATTGAGAAGATATGCGGTAGGATTTTGTCTCTGTAGCGCGATTTTTTGGATTCCACGTTTCTTTGTAGGGCTTCCATTACGTTAGAGAAGGCGTCTTTGAGGAGATTATCCTCGTCTTCCGATTTCAAAACGACTCCGCCCTTCCATGATTTCTGTATTTGGAGAACTTTGGTCATGGCGAAACTGTAGTTGTCACTTGCAAGGTACTTGAGGTAGTTGACGGCGTATCTGACTAGTTTTGGAACCGAGCCGTCTTTTGGAGGAGGAAAGCCATCTGAATTGCCCTCAATTTGAAGGCCGAAGTCCCAAAATACTTTGCTGGACGCGTGTACAAGTAGCTTCTCCAGCTCTCTGTATCGTGTGCGAATTTCTGTGCCAGCTTCGCCGCCGAATGCCTCAGAGAATTCGGAGTTGAGTTCTTCCATGGAGGCGAACATGTCCAAGAGCTTGAACAGTTTCTGCGGCTCTTTTGTGCTTCTGGCGACGCCTTCCCCAAATCGGAAGAAGACGGCCATGATTTTGTCCGCGATCTTCACGAAGCATTCAGGCCACATCAGTCCATCCATGATGGAGCCTAAAACTTGGCTACAGAGTTTCTTCTCGGAAACCAACACGCTCGTGGCTGCGACCTTGAAGTGTTCAATCCACAGAGAAATTGCTGTCTCCAACTTTTCCCACTCCATTTTGTCAATTTCTTCTGGAGTGTATGTTTTGAGATAGACTGGATTCAGCCGCATCAATGTCGTAGCTGCTCTTCTGTATCTAACCTGATTTATGAACGCTAGTTATAGAATTTGGCTGCAATTTTTTCTTACTAAAAGGAAAAAGAAAAGGAAAATATGTTATTTACCTTGACGTAAATATTGATGCAAATATCCAAACAATCGTTGGCAGCGAGGGTTTCAGAAATTCGTTTGGCAGCTTCGATCTCCAACTCGGTACCCATTTCAAACCCCACTGCTTCACCTTCTTTTTCTGCTTCACCATCTTCAAACTTGGGTTTTCTTTGACGCTTTAGATTCTTTAATATGTTTTCAAATTCATCTTGCAGATTAAGCAAAGCTTCGTCAAGCAACCCCTCAAACTTCATGTCGTCAATTTCTGTTTCGTATAGAGCTTTGAGAGTGATCATCGTCTCTTTCAGTCTGTGTGTCCGCTGTGAATCAGCAGCCTTCGTCCTGCTCAAGAACTCTACCACCTCTTGAAGTTTCTGGATCACCGATTCCCCCTCTCGGCTAATCATGCTTATTGATTCATTCAGTCTATCCACACAGTTTACTAGTTTGATCAGCTTCTTCAGACGTTCCTGTGCCGATTTTTCCACCGATAAATTGGCGAAGATCGCGAGAATCTTGCGTTGGAGAAACTCGGATCGCTTAAAGGAATCAAGCAGAACGAGAGCAGGCGAAGCTGCACGATTGATTCTCGTTTCAAGGGCTTTTGTCGTCATCGCCAATGATTGTAGAGGTATTATGCTTCTCGATGCTGTCGCGAGCGATTCGTCGATTGAATCAAGATTCTTCTCCATCTTCTCTAGGCTATCGTTCAATCCCGTCGAGGCTTGGAGGAGGATTTTCAAATCCGAGCATGCTGATTCGAGCTTCTCCATCCTCGAGTCCTCCTCCTCCCTCGGCGCCATTGTTACTACTCCTTGA

mRNA sequence

GTAAGCCGGCAGTATCATCTTCAGAGTTGCCTCTTTCAACTGCTCCCGCAAATCCAAATCTGGAATGCAATACGCGGTTCTGTGTTTATGTGAGAATTCCCTTAGAGCCTTCACGAATGCTTCCATTTTTGTTTTCGCTAATTCTTCCACGGTTTCCTTGTTCGGTAATCGCACGTCTTCCATGTCCATTACTGAAAGCAAGGGCTCCCAACATAGCATTTGGGCTTCCATTACGTTAGAGAAGGCGTCTTTGAGGAGATTATCCTCGTCTTCCGATTTCAAAACGACTCCGCCCTTCCATGATTTCTGTATTTGGAGAACTTTGGTCATGGCGAAACTGCCGAAGTCCCAAAATACTTTGCTGGACGCGTGTACAAGTAGCTTCTCCAGCTCTCTGTATCGTGTGCGAATTTCTGTGCCAGCTTCGCCGCCGAATGCCTCAGAGAATTCGGAGTTGAGTTCTTCCATGGAGGCGAACATGTCCAAGAGCTTGAACAGTTTCTGCGGCTCTTTTGTGCTTCTGGCGACGCCTTCCCCAAATCGGAAGAAGACGGCCATGATTTTGTCCGCGATCTTCACGAAGCATTCAGGCCACATCAGTCCATCCATGATGGAGCCTAAAACTTGGCTACAGAGTTTCTTCTCGGAAACCAACACGCTCGTGGCTGCGACCTTGAAGTGTTCAATCCACAGAGAAATTGCTGTCTCCAACTTTTCCCACTCCATTTTGTCAATTTCTTCTGGAGTATTAAGCAAAGCTTCGTCAAGCAACCCCTCAAACTTCATGTCGTCAATTTCTGTTTCGTATAGAGCTTTGAGAGTGATCATCGTCTCTTTCAGTCTACGTTCCTGTGCCGATTTTTCCACCGATAAATTGGCGAAGATCGCGAGAATCTTGCGTTGGAGAAACTCGGATCGCTTAAAGGAATCAAGCAGAACGAGAGCAGGCGAAGCTGCACGATTGATTCTCGTTTCAAGGGCTTTTGTCGTCATCGCCAATGATTGTAGAGGTATTATGCTTCTCGATGCTGTCGCGAGCGATTCGTCGATTGAATCAAGATTCTTCTCCATCTTCTCTAGGCTATCGTTCAATCCCGTCGAGGCTTGGAGGAGGATTTTCAAATCCGAGCATGCTGATTCGAGCTTCTCCATCCTCGAGTCCTCCTCCTCCCTCGGCGCCATTGTTACTACTCCTTGA

Coding sequence (CDS)

ATGCAATACGCGGTTCTGTGTTTATGTGAGAATTCCCTTAGAGCCTTCACGAATGCTTCCATTTTTGTTTTCGCTAATTCTTCCACGGTTTCCTTGTTCGGTAATCGCACGTCTTCCATGTCCATTACTGAAAGCAAGGGCTCCCAACATAGCATTTGGGCTTCCATTACGTTAGAGAAGGCGTCTTTGAGGAGATTATCCTCGTCTTCCGATTTCAAAACGACTCCGCCCTTCCATGATTTCTGTATTTGGAGAACTTTGGTCATGGCGAAACTGCCGAAGTCCCAAAATACTTTGCTGGACGCGTGTACAAGTAGCTTCTCCAGCTCTCTGTATCGTGTGCGAATTTCTGTGCCAGCTTCGCCGCCGAATGCCTCAGAGAATTCGGAGTTGAGTTCTTCCATGGAGGCGAACATGTCCAAGAGCTTGAACAGTTTCTGCGGCTCTTTTGTGCTTCTGGCGACGCCTTCCCCAAATCGGAAGAAGACGGCCATGATTTTGTCCGCGATCTTCACGAAGCATTCAGGCCACATCAGTCCATCCATGATGGAGCCTAAAACTTGGCTACAGAGTTTCTTCTCGGAAACCAACACGCTCGTGGCTGCGACCTTGAAGTGTTCAATCCACAGAGAAATTGCTGTCTCCAACTTTTCCCACTCCATTTTGTCAATTTCTTCTGGAGTATTAAGCAAAGCTTCGTCAAGCAACCCCTCAAACTTCATGTCGTCAATTTCTGTTTCGTATAGAGCTTTGAGAGTGATCATCGTCTCTTTCAGTCTACGTTCCTGTGCCGATTTTTCCACCGATAAATTGGCGAAGATCGCGAGAATCTTGCGTTGGAGAAACTCGGATCGCTTAAAGGAATCAAGCAGAACGAGAGCAGGCGAAGCTGCACGATTGATTCTCGTTTCAAGGGCTTTTGTCGTCATCGCCAATGATTGTAGAGGTATTATGCTTCTCGATGCTGTCGCGAGCGATTCGTCGATTGAATCAAGATTCTTCTCCATCTTCTCTAGGCTATCGTTCAATCCCGTCGAGGCTTGGAGGAGGATTTTCAAATCCGAGCATGCTGATTCGAGCTTCTCCATCCTCGAGTCCTCCTCCTCCCTCGGCGCCATTGTTACTACTCCTTGA
Homology
[Close]
BLAST of CmoCh05G001370 vs. TrEMBL
Match: A0A0S3RGG8_PHAAN (Uncharacterized protein (Fragment) OS=Vigna angularis var. angularis GN=Vigan.02G267900 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 2.3e-17
Identity = 57/112 (50.89%), Postives = 67/112 (59.82%), Query Frame = 1 

Query: 95  SQNTLLDACTSSFSSSLYRVRISVPASPPNASENSELSSSMEANMSKSLNSFCGSFVLLA 154
           S  TLL+A   SFS+S  RV +S P SP    +   LS S ++N S SL SF GSF+L A
Sbjct: 56  SHKTLLEASIMSFSNSRNRVHMSAPGSPSKICDIWGLSFSRDSNTSNSLKSFWGSFLLRA 115

Query: 155 TPSPNRKKTAMILSAIFTKHSGHISPSMMEPKTWLQSFFSETNTLVAATLKC 207
            PSP RK T  ILS I  KHSG   PSM  P+T+ QS FSE  T +  T KC
Sbjct: 116 PPSPKRKNTTKILSEILMKHSGQTRPSMKSPRTFSQSLFSENKTFLITTSKC 167

[Close]
BLAST of CmoCh05G001370 vs. NCBI nr
Match: gi|965664043|dbj|BAT79752.1| (hypothetical protein VIGAN_02267900, partial [Vigna angularis var. angularis])

HSP 1 Score: 98.2 bits (243), Expect = 3.2e-17
Identity = 57/112 (50.89%), Postives = 67/112 (59.82%), Query Frame = 1 

Query: 95  SQNTLLDACTSSFSSSLYRVRISVPASPPNASENSELSSSMEANMSKSLNSFCGSFVLLA 154
           S  TLL+A   SFS+S  RV +S P SP    +   LS S ++N S SL SF GSF+L A
Sbjct: 56  SHKTLLEASIMSFSNSRNRVHMSAPGSPSKICDIWGLSFSRDSNTSNSLKSFWGSFLLRA 115

Query: 155 TPSPNRKKTAMILSAIFTKHSGHISPSMMEPKTWLQSFFSETNTLVAATLKC 207
            PSP RK T  ILS I  KHSG   PSM  P+T+ QS FSE  T +  T KC
Sbjct: 116 PPSPKRKNTTKILSEILMKHSGQTRPSMKSPRTFSQSLFSENKTFLITTSKC 167

The following BLAST results are available for this feature:
BLAST of CmoCh05G001370 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh05G001370 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0S3RGG8_PHAAN2.3e-1750.89Uncharacterized protein (Fragment) OS=Vigna angularis var. angularis GN=Vigan.02... [more]
BLAST of CmoCh05G001370 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh05G001370 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|965664043|dbj|BAT79752.1|3.2e-1750.89hypothetical protein VIGAN_02267900, partial [Vigna angularis var. angularis][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh05G001370.1CmoCh05G001370.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh05G001370ClCG08G016560Watermelon (Charleston Gray)cmowcgB716
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh05G001370Cucumber (Chinese Long) v3cmocucB0918
CmoCh05G001370Cucumber (Chinese Long) v3cmocucB0933
CmoCh05G001370Cucumber (Chinese Long) v3cmocucB0949
CmoCh05G001370Watermelon (97103) v2cmowmbB802
CmoCh05G001370Wax gourdcmowgoB0944
CmoCh05G001370Wax gourdcmowgoB0960
CmoCh05G001370Cucurbita maxima (Rimu)cmacmoB483
CmoCh05G001370Cucurbita moschata (Rifu)cmocmoB033
CmoCh05G001370Cucurbita moschata (Rifu)cmocmoB156
CmoCh05G001370Cucurbita moschata (Rifu)cmocmoB369
CmoCh05G001370Cucumber (Gy14) v1cgycmoB0969
CmoCh05G001370Cucumber (Gy14) v1cgycmoB1093
CmoCh05G001370Cucurbita maxima (Rimu)cmacmoB062
CmoCh05G001370Cucurbita maxima (Rimu)cmacmoB199
CmoCh05G001370Cucurbita maxima (Rimu)cmacmoB786
CmoCh05G001370Wild cucumber (PI 183967)cmocpiB782
CmoCh05G001370Wild cucumber (PI 183967)cmocpiB795
CmoCh05G001370Cucumber (Chinese Long) v2cmocuB777
CmoCh05G001370Cucumber (Chinese Long) v2cmocuB792
CmoCh05G001370Melon (DHL92) v3.5.1cmomeB709
CmoCh05G001370Melon (DHL92) v3.5.1cmomeB718
CmoCh05G001370Melon (DHL92) v3.5.1cmomeB729
CmoCh05G001370Watermelon (97103) v1cmowmB748
CmoCh05G001370Cucurbita pepo (Zucchini)cmocpeB720
CmoCh05G001370Cucurbita pepo (Zucchini)cmocpeB734
CmoCh05G001370Cucurbita pepo (Zucchini)cmocpeB740
CmoCh05G001370Cucurbita pepo (Zucchini)cmocpeB750
CmoCh05G001370Bottle gourd (USVL1VR-Ls)cmolsiB715
CmoCh05G001370Bottle gourd (USVL1VR-Ls)cmolsiB731
CmoCh05G001370Cucumber (Gy14) v2cgybcmoB238
CmoCh05G001370Cucumber (Gy14) v2cgybcmoB533
CmoCh05G001370Cucumber (Gy14) v2cgybcmoB953
CmoCh05G001370Melon (DHL92) v3.6.1cmomedB815
CmoCh05G001370Melon (DHL92) v3.6.1cmomedB826
CmoCh05G001370Silver-seed gourdcarcmoB0443
CmoCh05G001370Silver-seed gourdcarcmoB0263
CmoCh05G001370Silver-seed gourdcarcmoB0617
CmoCh05G001370Silver-seed gourdcarcmoB1047