CmoCh04G027900.1 (mRNA) Cucurbita moschata (Rifu)
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TTTCGCTTTTTCCCCAAAGTGGGTCCGTCTCTTATTGCCTCCATGGCTTCGCTTTTTCTTCCCCCTTTTTTAAACCTATTTTGATTACCCAAAAGAGCTAAATTTGTTTGTCCATCAGTTTTTTGGACTCAGGAGGCTCAGAAATGTGCATCACCAACACAATCAACAACGAAAACACCCACGATTCTGTAATCCAACGCCCAATTCGTAAATCCAGAACCAAGACAAGACGACCCAAATTTCTCAGCCTTCGATCGGAGCTTATTTCGCCCAGAATTTCCCAAATTTCCCCGATGACACACGACCCATCAGCGCCGCCGCCGCAGAAACAGCTTACTCTGTTTCCCCTGCATCCGGAGAATTTGGTGGAGGACAGAGAGGAGAACGTGGCGTTGATGTTCGAGAACGACGTCGTGAGCAGCTGCTGCAGCTTAGGGAGTTTCCTTCCGACTTACCACAACGACATGTCGTCAGAGGAAGAGTCGCGTAATTTAGCAGAGGAGGCGGCGCTTGTACGGACGGCGATGAGGAGTCGGGAGAGGGAAGCAGGGGCAGAGGAGAAGTGGGTTTGTTATTCGGAGGTAGTGGAGAAGAAGGAGGAGCCGTCATGGACGGCAGCGGCGGCGGCGGCGGAGGAGGAGGAGGAGGAGGTAGAGGAAGTGACGAGCACGGCGACAAAGAAGAAGAAGAAGAAGAAGAAGGTGGAGATGAGGGGGAAACAGCTGAGGTTGAAGCTTGATTACGAGGGGATTTTGAACGCTTGGTCGGATAAAGCTCCGCTTTTTATCAATGGAGAATCGCCGCAGACTGTGCCGAATCTTCACGATGATGGGAGTGCTTGGGAGGAGAATCGGAGATCAAAAATGGGGAGCGAAGGAGGAGGGAATGTGTGGAAAGTGCCGGAGATTGGATGGAAGGTGGGTGGCAGAGAGGCAAGTGTCTTGAGATACAAAGAGAAAAGGCAGAGCAGGCTGTTCTCCAAGCGCATTCGGTATCAAGTTAGAAAACTCAATGCTGAAAAACGTCCAAGAATGAAGGTACTTTCAACTCATATCATATACACATTATTGCATCATTTCCATCTATCTAATTCAAACCAAATATTACATTGAATTCATTAAGGTGTATACCTTTAATAAAATGATTAGGTGTTTGAATTTATCAATCTTATATCCGTTTATATCAATGTCAGTTATATCGATTCACAACAAATAGTTTAGTAGCTAGAATCGGGTGGTTTGTGGATTAATTTTGAAATTTTTTATAGGTTAAAATGGGTGCAATTCATTAGTTGGTTTTCTAGCATTTTCCAATTTGATTATTAAGAATGTATATGAATGAACCAAGATCACATTAGAACGAGAGTGATCTTGAACATAGAATGACTAAAAAAAACTTACAAAATTGATGATCAAGTTGCACGTTCCTTTTTAATGCCTTAAAACGATGTTGGAATGACTCGTATTGATCTGTGGAGGATAATTTTCTCTCTTAAAAGTGAAAAGTATATAAAGCAACTGAGATGTCACTAAGTATTAGATTTTGAATTCTGATCCAAATTTGAATGGTTACCAAAAAGATATTAATTAAATTTTTTTATTTACTGATTTGTTATTATTTCTTTTTTTTATATATATTTGATTAAAAACTGATTCCTTTTATCGAAGTATGAATGGACGTTCCTCTCCCTCTCTCTTGCAGGGTCGCTTTGTGAAAAGAAACTGAGAAGGTTTAGAGACATTATTTGGAGATAAGGGCATTCAGGGAAATGTCTTCTCTTTTCTTTATTTTCCACAATTTCAATGTCTTTTTTCCCCCTCTTAAAGATCATGTTGCTTTAAGAAAATATAATTAATGTTAAATAAAAATGTTTATCAAGAAAAAGTATCAACTAGAAATGAATATCCGTACAC TTTCGCTTTTTCCCCAAAGTGGGTCCGTCTCTTATTGCCTCCATGGCTTCGCTTTTTCTTCCCCCTTTTTTAAACCTATTTTGATTACCCAAAAGAGCTAAATTTGTTTGTCCATCAGTTTTTTGGACTCAGGAGGCTCAGAAATGTGCATCACCAACACAATCAACAACGAAAACACCCACGATTCTGTAATCCAACGCCCAATTCGTAAATCCAGAACCAAGACAAGACGACCCAAATTTCTCAGCCTTCGATCGGAGCTTATTTCGCCCAGAATTTCCCAAATTTCCCCGATGACACACGACCCATCAGCGCCGCCGCCGCAGAAACAGCTTACTCTGTTTCCCCTGCATCCGGAGAATTTGGTGGAGGACAGAGAGGAGAACGTGGCGTTGATGTTCGAGAACGACGTCGTGAGCAGCTGCTGCAGCTTAGGGAGTTTCCTTCCGACTTACCACAACGACATGTCGTCAGAGGAAGAGTCGCGTAATTTAGCAGAGGAGGCGGCGCTTGTACGGACGGCGATGAGGAGTCGGGAGAGGGAAGCAGGGGCAGAGGAGAAGTGGGTTTGTTATTCGGAGGTAGTGGAGAAGAAGGAGGAGCCGTCATGGACGGCAGCGGCGGCGGCGGCGGAGGAGGAGGAGGAGGAGGTAGAGGAAGTGACGAGCACGGCGACAAAGAAGAAGAAGAAGAAGAAGAAGGTGGAGATGAGGGGGAAACAGCTGAGGTTGAAGCTTGATTACGAGGGGATTTTGAACGCTTGGTCGGATAAAGCTCCGCTTTTTATCAATGGAGAATCGCCGCAGACTGTGCCGAATCTTCACGATGATGGGAGTGCTTGGGAGGAGAATCGGAGATCAAAAATGGGGAGCGAAGGAGGAGGGAATGTGTGGAAAGTGCCGGAGATTGGATGGAAGGTGGGTGGCAGAGAGGCAAGTGTCTTGAGATACAAAGAGAAAAGGCAGAGCAGGCTGTTCTCCAAGCGCATTCGGTATCAAGTTAGAAAACTCAATGCTGAAAAACGTCCAAGAATGAAGGGTCGCTTTGTGAAAAGAAACTGAGAAGGTTTAGAGACATTATTTGGAGATAAGGGCATTCAGGGAAATGTCTTCTCTTTTCTTTATTTTCCACAATTTCAATGTCTTTTTTCCCCCTCTTAAAGATCATGTTGCTTTAAGAAAATATAATTAATGTTAAATAAAAATGTTTATCAAGAAAAAGTATCAACTAGAAATGAATATCCGTACAC ATGTGCATCACCAACACAATCAACAACGAAAACACCCACGATTCTGTAATCCAACGCCCAATTCGTAAATCCAGAACCAAGACAAGACGACCCAAATTTCTCAGCCTTCGATCGGAGCTTATTTCGCCCAGAATTTCCCAAATTTCCCCGATGACACACGACCCATCAGCGCCGCCGCCGCAGAAACAGCTTACTCTGTTTCCCCTGCATCCGGAGAATTTGGTGGAGGACAGAGAGGAGAACGTGGCGTTGATGTTCGAGAACGACGTCGTGAGCAGCTGCTGCAGCTTAGGGAGTTTCCTTCCGACTTACCACAACGACATGTCGTCAGAGGAAGAGTCGCGTAATTTAGCAGAGGAGGCGGCGCTTGTACGGACGGCGATGAGGAGTCGGGAGAGGGAAGCAGGGGCAGAGGAGAAGTGGGTTTGTTATTCGGAGGTAGTGGAGAAGAAGGAGGAGCCGTCATGGACGGCAGCGGCGGCGGCGGCGGAGGAGGAGGAGGAGGAGGTAGAGGAAGTGACGAGCACGGCGACAAAGAAGAAGAAGAAGAAGAAGAAGGTGGAGATGAGGGGGAAACAGCTGAGGTTGAAGCTTGATTACGAGGGGATTTTGAACGCTTGGTCGGATAAAGCTCCGCTTTTTATCAATGGAGAATCGCCGCAGACTGTGCCGAATCTTCACGATGATGGGAGTGCTTGGGAGGAGAATCGGAGATCAAAAATGGGGAGCGAAGGAGGAGGGAATGTGTGGAAAGTGCCGGAGATTGGATGGAAGGTGGGTGGCAGAGAGGCAAGTGTCTTGAGATACAAAGAGAAAAGGCAGAGCAGGCTGTTCTCCAAGCGCATTCGGTATCAAGTTAGAAAACTCAATGCTGAAAAACGTCCAAGAATGAAGGGTCGCTTTGTGAAAAGAAACTGA
BLAST of CmoCh04G027900.1 vs. Swiss-Prot
Match: COL16_ARATH (Zinc finger protein CONSTANS-LIKE 16 OS=Arabidopsis thaliana GN=COL16 PE=2 SV=2) HSP 1 Score: 84.0 bits (206), Expect = 3.2e-15 Identity = 64/156 (41.03%), Postives = 90/156 (57.69%), Query Frame = 1
BLAST of CmoCh04G027900.1 vs. Swiss-Prot
Match: CIA2_ARATH (Protein CHLOROPLAST IMPORT APPARATUS 2 OS=Arabidopsis thaliana GN=CIA2 PE=2 SV=1) HSP 1 Score: 79.0 bits (193), Expect = 1.0e-13 Identity = 75/202 (37.13%), Postives = 101/202 (50.00%), Query Frame = 1
BLAST of CmoCh04G027900.1 vs. Swiss-Prot
Match: COL7_ARATH (Zinc finger protein CONSTANS-LIKE 7 OS=Arabidopsis thaliana GN=COL7 PE=2 SV=1) HSP 1 Score: 75.9 bits (185), Expect = 8.7e-13 Identity = 56/141 (39.72%), Postives = 80/141 (56.74%), Query Frame = 1
BLAST of CmoCh04G027900.1 vs. Swiss-Prot
Match: COL6_ARATH (Zinc finger protein CONSTANS-LIKE 6 OS=Arabidopsis thaliana GN=COL6 PE=2 SV=2) HSP 1 Score: 65.9 bits (159), Expect = 9.0e-10 Identity = 83/269 (30.86%), Postives = 124/269 (46.10%), Query Frame = 1
BLAST of CmoCh04G027900.1 vs. Swiss-Prot
Match: HD1_ORYSJ (Zinc finger protein HD1 OS=Oryza sativa subsp. japonica GN=HD1 PE=2 SV=1) HSP 1 Score: 54.7 bits (130), Expect = 2.1e-06 Identity = 28/44 (63.64%), Postives = 35/44 (79.55%), Query Frame = 1
BLAST of CmoCh04G027900.1 vs. TrEMBL
Match: A0A0A0KR00_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G517810 PE=4 SV=1) HSP 1 Score: 357.8 bits (917), Expect = 1.3e-95 Identity = 220/330 (66.67%), Postives = 240/330 (72.73%), Query Frame = 1
BLAST of CmoCh04G027900.1 vs. TrEMBL
Match: W9SWY4_9ROSA (Protein CHLOROPLAST IMPORT APPARATUS 2 OS=Morus notabilis GN=L484_017689 PE=4 SV=1) HSP 1 Score: 204.5 bits (519), Expect = 1.8e-49 Identity = 162/363 (44.63%), Postives = 198/363 (54.55%), Query Frame = 1
BLAST of CmoCh04G027900.1 vs. TrEMBL
Match: F6GX66_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0219g00220 PE=4 SV=1) HSP 1 Score: 199.5 bits (506), Expect = 5.8e-48 Identity = 158/322 (49.07%), Postives = 182/322 (56.52%), Query Frame = 1
BLAST of CmoCh04G027900.1 vs. TrEMBL
Match: A5ADZ4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_028190 PE=4 SV=1) HSP 1 Score: 197.6 bits (501), Expect = 2.2e-47 Identity = 157/322 (48.76%), Postives = 181/322 (56.21%), Query Frame = 1
BLAST of CmoCh04G027900.1 vs. TrEMBL
Match: A0A067LD08_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10206 PE=4 SV=1) HSP 1 Score: 192.2 bits (487), Expect = 9.3e-46 Identity = 149/347 (42.94%), Postives = 191/347 (55.04%), Query Frame = 1
BLAST of CmoCh04G027900.1 vs. TAIR10
Match: AT5G14370.1 (AT5G14370.1 CCT motif family protein) HSP 1 Score: 147.1 bits (370), Expect = 1.7e-35 Identity = 124/320 (38.75%), Postives = 167/320 (52.19%), Query Frame = 1
BLAST of CmoCh04G027900.1 vs. TAIR10
Match: AT1G25440.1 (AT1G25440.1 B-box type zinc finger protein with CCT domain) HSP 1 Score: 84.0 bits (206), Expect = 1.8e-16 Identity = 64/156 (41.03%), Postives = 90/156 (57.69%), Query Frame = 1
BLAST of CmoCh04G027900.1 vs. TAIR10
Match: AT5G57180.2 (AT5G57180.2 chloroplast import apparatus 2) HSP 1 Score: 79.0 bits (193), Expect = 5.8e-15 Identity = 75/202 (37.13%), Postives = 101/202 (50.00%), Query Frame = 1
BLAST of CmoCh04G027900.1 vs. TAIR10
Match: AT1G73870.1 (AT1G73870.1 B-box type zinc finger protein with CCT domain) HSP 1 Score: 75.9 bits (185), Expect = 4.9e-14 Identity = 56/141 (39.72%), Postives = 80/141 (56.74%), Query Frame = 1
BLAST of CmoCh04G027900.1 vs. TAIR10
Match: AT1G07050.1 (AT1G07050.1 CCT motif family protein) HSP 1 Score: 72.0 bits (175), Expect = 7.1e-13 Identity = 64/153 (41.83%), Postives = 86/153 (56.21%), Query Frame = 1
BLAST of CmoCh04G027900.1 vs. NCBI nr
Match: gi|778703514|ref|XP_004142772.2| (PREDICTED: zinc finger protein CONSTANS-LIKE 6 [Cucumis sativus]) HSP 1 Score: 357.8 bits (917), Expect = 1.8e-95 Identity = 220/330 (66.67%), Postives = 240/330 (72.73%), Query Frame = 1
BLAST of CmoCh04G027900.1 vs. NCBI nr
Match: gi|659117908|ref|XP_008458850.1| (PREDICTED: zinc finger protein CONSTANS-LIKE 6 [Cucumis melo]) HSP 1 Score: 354.4 bits (908), Expect = 2.0e-94 Identity = 221/333 (66.37%), Postives = 244/333 (73.27%), Query Frame = 1
BLAST of CmoCh04G027900.1 vs. NCBI nr
Match: gi|703157187|ref|XP_010111661.1| (Protein CHLOROPLAST IMPORT APPARATUS 2 [Morus notabilis]) HSP 1 Score: 204.5 bits (519), Expect = 2.6e-49 Identity = 162/363 (44.63%), Postives = 198/363 (54.55%), Query Frame = 1
BLAST of CmoCh04G027900.1 vs. NCBI nr
Match: gi|225452242|ref|XP_002268929.1| (PREDICTED: uncharacterized protein LOC100254358 [Vitis vinifera]) HSP 1 Score: 199.5 bits (506), Expect = 8.3e-48 Identity = 158/322 (49.07%), Postives = 182/322 (56.52%), Query Frame = 1
BLAST of CmoCh04G027900.1 vs. NCBI nr
Match: gi|296081330|emb|CBI17712.3| (unnamed protein product [Vitis vinifera]) HSP 1 Score: 199.5 bits (506), Expect = 8.3e-48 Identity = 158/322 (49.07%), Postives = 182/322 (56.52%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
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