CmoCh04G027630.1 (mRNA) Cucurbita moschata (Rifu)
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AGGGTGGAAGGAGGAGATGGAAGGGTCAAAGGGCTCAAGAATTGCTTCACTGATCCTAAGAATTCTGACCTTCATTTTGATCTTCATTTCTCTCATAATCAACGCCACCAATTCCAAAACTTTCAACAAAGGCGCTGAAAATGAAACAACATTTAAGTTTAAAGATGTTTATTCTTATCGGTAAGTGTGTTTTTAAATATATTTTCTCTTTTAGAATTCTCAGCTATTTTTTATTCAATCTGGTTCGGTTTATGTATAGATATTTGATATCAACTACGGTTATTGGAGCTGTTTTGAGTCTACTTCAAATCGCTCTCAACATTTACAACGTCGTTACCAAAAGCCATCGAACTCTACTCTTCGATATGTTCAGCGACAAAGTAAGTATACTAATATTTGTTTAAGCTTTCGAGATTTAAGGATGTTTAATGTCATGTTATGTTATGTAGCTGTTGTCGTATCTTCTACTGTCGGGAGCCTCGGCGGGGTTAGGTGCTGGCATCGATTTGAGAGTCGGTCTTAAAGAGCTGGTTGGCAACCTTTTAAACTCGTTTTTCGACAAGGGAAATGCTTCGGCGGCTGTTCTTCTCCTTGCGTTTATTTGCGCTGCCGTTGTCTCAATTCTCTCTTCCTTGGCCCTCATCAGGAAGCCTTGAAAATATTGTGTTGGTCTTCCATATTTGCTTTGTATTGAT AGGGTGGAAGGAGGAGATGGAAGGGTCAAAGGGCTCAAGAATTGCTTCACTGATCCTAAGAATTCTGACCTTCATTTTGATCTTCATTTCTCTCATAATCAACGCCACCAATTCCAAAACTTTCAACAAAGGCGCTGAAAATGAAACAACATTTAAGTTTAAAGATGTTTATTCTTATCGATATTTGATATCAACTACGGTTATTGGAGCTGTTTTGAGTCTACTTCAAATCGCTCTCAACATTTACAACGTCGTTACCAAAAGCCATCGAACTCTACTCTTCGATATGTTCAGCGACAAACTGTTGTCGTATCTTCTACTGTCGGGAGCCTCGGCGGGGTTAGGTGCTGGCATCGATTTGAGAGTCGGTCTTAAAGAGCTGGTTGGCAACCTTTTAAACTCGTTTTTCGACAAGGGAAATGCTTCGGCGGCTGTTCTTCTCCTTGCGTTTATTTGCGCTGCCGTTGTCTCAATTCTCTCTTCCTTGGCCCTCATCAGGAAGCCTTGAAAATATTGTGTTGGTCTTCCATATTTGCTTTGTATTGAT ATGGAAGGGTCAAAGGGCTCAAGAATTGCTTCACTGATCCTAAGAATTCTGACCTTCATTTTGATCTTCATTTCTCTCATAATCAACGCCACCAATTCCAAAACTTTCAACAAAGGCGCTGAAAATGAAACAACATTTAAGTTTAAAGATGTTTATTCTTATCGATATTTGATATCAACTACGGTTATTGGAGCTGTTTTGAGTCTACTTCAAATCGCTCTCAACATTTACAACGTCGTTACCAAAAGCCATCGAACTCTACTCTTCGATATGTTCAGCGACAAACTGTTGTCGTATCTTCTACTGTCGGGAGCCTCGGCGGGGTTAGGTGCTGGCATCGATTTGAGAGTCGGTCTTAAAGAGCTGGTTGGCAACCTTTTAAACTCGTTTTTCGACAAGGGAAATGCTTCGGCGGCTGTTCTTCTCCTTGCGTTTATTTGCGCTGCCGTTGTCTCAATTCTCTCTTCCTTGGCCCTCATCAGGAAGCCTTGA
BLAST of CmoCh04G027630.1 vs. Swiss-Prot
Match: CSPLC_SOYBN (CASP-like protein 4D1 OS=Glycine max PE=2 SV=1) HSP 1 Score: 115.9 bits (289), Expect = 4.1e-25 Identity = 75/165 (45.45%), Postives = 107/165 (64.85%), Query Frame = 1
BLAST of CmoCh04G027630.1 vs. Swiss-Prot
Match: CSPLE_RICCO (CASP-like protein 4D1 OS=Ricinus communis GN=RCOM_1206790 PE=3 SV=1) HSP 1 Score: 109.8 bits (273), Expect = 2.9e-23 Identity = 70/161 (43.48%), Postives = 101/161 (62.73%), Query Frame = 1
BLAST of CmoCh04G027630.1 vs. Swiss-Prot
Match: CSPLL_POPTR (CASP-like protein 4D1 OS=Populus trichocarpa GN=POPTR_0010s21230g PE=2 SV=2) HSP 1 Score: 106.3 bits (264), Expect = 3.2e-22 Identity = 66/162 (40.74%), Postives = 101/162 (62.35%), Query Frame = 1
BLAST of CmoCh04G027630.1 vs. Swiss-Prot
Match: CSPLL_ARALL (CASP-like protein 4D2 OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_903204 PE=3 SV=1) HSP 1 Score: 98.2 bits (243), Expect = 8.8e-20 Identity = 63/161 (39.13%), Postives = 101/161 (62.73%), Query Frame = 1
BLAST of CmoCh04G027630.1 vs. Swiss-Prot
Match: CSPLB_ARATH (CASP-like protein 4D2 OS=Arabidopsis thaliana GN=At2g39518 PE=2 SV=1) HSP 1 Score: 98.2 bits (243), Expect = 8.8e-20 Identity = 65/161 (40.37%), Postives = 99/161 (61.49%), Query Frame = 1
BLAST of CmoCh04G027630.1 vs. TrEMBL
Match: A0A0A0KS88_CUCSA (CASP-like protein OS=Cucumis sativus GN=Csa_5G515020 PE=3 SV=1) HSP 1 Score: 188.3 bits (477), Expect = 7.2e-45 Identity = 109/161 (67.70%), Postives = 130/161 (80.75%), Query Frame = 1
BLAST of CmoCh04G027630.1 vs. TrEMBL
Match: A0A0A0KNU7_CUCSA (CASP-like protein OS=Cucumis sativus GN=Csa_5G515030 PE=3 SV=1) HSP 1 Score: 185.3 bits (469), Expect = 6.1e-44 Identity = 110/160 (68.75%), Postives = 126/160 (78.75%), Query Frame = 1
BLAST of CmoCh04G027630.1 vs. TrEMBL
Match: A0A0A0KU83_CUCSA (CASP-like protein OS=Cucumis sativus GN=Csa_5G515010 PE=3 SV=1) HSP 1 Score: 133.3 bits (334), Expect = 2.7e-28 Identity = 79/162 (48.77%), Postives = 105/162 (64.81%), Query Frame = 1
BLAST of CmoCh04G027630.1 vs. TrEMBL
Match: W9SGV0_9ROSA (CASP-like protein OS=Morus notabilis GN=L484_009956 PE=3 SV=1) HSP 1 Score: 120.6 bits (301), Expect = 1.8e-24 Identity = 73/158 (46.20%), Postives = 107/158 (67.72%), Query Frame = 1
BLAST of CmoCh04G027630.1 vs. TrEMBL
Match: M5X682_PRUPE (CASP-like protein OS=Prunus persica GN=PRUPE_ppa024507mg PE=3 SV=1) HSP 1 Score: 117.1 bits (292), Expect = 2.0e-23 Identity = 71/161 (44.10%), Postives = 108/161 (67.08%), Query Frame = 1
BLAST of CmoCh04G027630.1 vs. TAIR10
Match: AT2G39518.1 (AT2G39518.1 Uncharacterised protein family (UPF0497)) HSP 1 Score: 98.2 bits (243), Expect = 4.9e-21 Identity = 65/161 (40.37%), Postives = 99/161 (61.49%), Query Frame = 1
BLAST of CmoCh04G027630.1 vs. TAIR10
Match: AT2G39530.1 (AT2G39530.1 Uncharacterised protein family (UPF0497)) HSP 1 Score: 95.5 bits (236), Expect = 3.2e-20 Identity = 64/162 (39.51%), Postives = 101/162 (62.35%), Query Frame = 1
BLAST of CmoCh04G027630.1 vs. NCBI nr
Match: gi|449450002|ref|XP_004142753.1| (PREDICTED: CASP-like protein 4D1 [Cucumis sativus]) HSP 1 Score: 188.3 bits (477), Expect = 1.0e-44 Identity = 109/161 (67.70%), Postives = 130/161 (80.75%), Query Frame = 1
BLAST of CmoCh04G027630.1 vs. NCBI nr
Match: gi|659117983|ref|XP_008458889.1| (PREDICTED: CASP-like protein RCOM_1206790 [Cucumis melo]) HSP 1 Score: 186.4 bits (472), Expect = 3.9e-44 Identity = 109/161 (67.70%), Postives = 129/161 (80.12%), Query Frame = 1
BLAST of CmoCh04G027630.1 vs. NCBI nr
Match: gi|700196121|gb|KGN51298.1| (hypothetical protein Csa_5G515030 [Cucumis sativus]) HSP 1 Score: 185.3 bits (469), Expect = 8.7e-44 Identity = 110/160 (68.75%), Postives = 126/160 (78.75%), Query Frame = 1
BLAST of CmoCh04G027630.1 vs. NCBI nr
Match: gi|659117979|ref|XP_008458887.1| (PREDICTED: CASP-like protein RCOM_1206790 [Cucumis melo]) HSP 1 Score: 149.4 bits (376), Expect = 5.3e-33 Identity = 80/163 (49.08%), Postives = 118/163 (72.39%), Query Frame = 1
BLAST of CmoCh04G027630.1 vs. NCBI nr
Match: gi|659117986|ref|XP_008458890.1| (PREDICTED: CASP-like protein RCOM_1206790 [Cucumis melo]) HSP 1 Score: 134.4 bits (337), Expect = 1.8e-28 Identity = 78/162 (48.15%), Postives = 107/162 (66.05%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
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