CmoCh04G027510.1 (mRNA) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G027510.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Actin depolymerizing factor 4
Location	Cmo_Chr04 : 19910171 .. 19913663 (+)
Sequence length	1138

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCGGTTTCTTAGCCGTCTGGGTGATATTATCAATCGCCACCACCCTCCGGGTGAATGGCTTCCACAATTATTATTATTTTATAATTTATATATATATATATATCTTAATTATTTTTTTAATATTAGCAGTCGAATCTCTTAGGCCTTGCGCGGTACAGCCCTCGTTTCCCATCCCATCGTCTTCCTCTCTTCACCCACGCTTCTATCTTCTTTATCGTCTCGTCTGTGGAAGCCCTAAATTTTCTCAACCTTTCTCGCCCTTTCTTTCGCTTTCTCGGGAAAATGGTGAGCTTTTCCTCTTCTTTTCCCTTTTCGATTCATTTTGTCTGGCTTAGTTTTGTTGATTATTGTTCTTTTTTCTTTTTTTTTCCATTAGTTAATTTGTTTGTTTATTTTTCTCTTCTATGTTTTTCTATTCGATCCTTGGAGTTTTTCTATTCGATCCTTGGAGTTCTTGGCTGTTTTGAAACGGAATCCTTGTAAATCGCTGCATCGATTGATTGTTGTTCATTTTCGTCCGCTTGTTTAGTGTTTCAATGGCCTTGGATTGTTGATTATATTGAATACCATGCATTGTTAGCGAGTGGCTAAAAGCATTGGCCACCGTTGATGTAAATCGACTTATTACGTTCTCGTACATTGATCCCTGTTTTCACTGGGACCTTGTGTTGTGACTTCACTTTAAATCCTTTAGTTTATTATTATTTTTAATATTTTCCCCTGCCCGTTAATGATGATAATTGTGAGATGTTTGCTTCATCTCAGTGGTTTAAACATTGGCATTTTTGTTGATGGATATGATTCTTATATTGAGATATTTTGCATTGTGTTACCTGAAAGTGTATGATGATTTATCACAAGTTTATATAATTTGGAAACCTTCTATTGACGAAGTTGGAAAAGAAGACTGAAGGGTATTGGATTGGAAAGGAAAACATCTATTTAACTATTTCAATAGAGGTTTATTATCATCGGTCCATCTCATTTTGGTATGGTCATTGTCAAAACTCCTTCATGGATCCAAGTTATTTCACTTTGGGATAGTCCATGAGTCGCCCTCTTCTCCCTCAATGTTGTTCATCCTTTGTGATTTTCCTTTATTTCTTAGTTTGCTTCTCCCTTATCACCATCACCATTAGCGCGTTTGTTAGGAAATGGGGATAGGACGCTTGTTGGCATAGACTATAGAGCTAAGCATCATATTTGAAGGTGTGATTTGTTTCAGAATTAAAAAGTTGTGGCTCTAGAATTTCAGGGAGGAGCTGGTTAAAATTGTTCTCCTAAACACTAGAGACTAGGGTCACTGTTGGATACAATGACAATAAGAAACGAGTAATGAGAAAAGGTCAGAGGTTCAAATCCCCCCTGCATATTTTCGAACTAAAAAAAAGGATGATTTTTTTCTCTCCCTACTTCTATCATACTGTAATAAAGTGTTAGGTTTCTTATAAAAAAAAAAAGAAAAAAAAAAGGGAAACAAAAAGGATTTAGGGGTTTTACCAAAGGGATGTTCATACAGTAAGAGGACTTCTATAAAAAAGAAACTAGGATCAGATCCCTCTTGCAGGTGCATTGTTATATGAACTTGATTTCTGGGGGCTCTGTTTGTAAATATGATTTTCATGTTAGTGTTTAGTAGCATAACATGGATATTAACTACAATGATGAAAACTCCTTGGTAGGGGAAACTCGAATGGAAGTTGATTGTCATCTAACCAAAGAACTAGCTTCAAAGTTTGACCCCCAAGCCTACGTGTTGTTAGGGAATTCCCCAAACACTTCGCTGATGCTAATAACTTGAATGGGTCACTTTTGAGAGATTGATGTTTAGTGTTATGCCCTATTCACCACAGAGCCACTTACATTCCATAAAGAGTAGGGGAATTGTTTGAAGTCTAGGCCTCCAGAGCCACTTACATTCCATCTCAAAGTTCTCATGGGACATTTGTACACCTTATGAGTCAACTTTGGCCCACATTGTTTTTCCTTGGAAAAAAAAAAAAAGGATATGCCTATCATCAAATAAAAAGCTAATTCAATTATGAAAAGGATGTTTTATGTACAGATAAAACTTCATCTTGTTAACTTATGCGAAGATTGAATTAGCTTTTTATAATTGAATTAGCTTTTTATTATTGAATTAGCTTTTTATTTGATGATAGGCATATCTTTTCTTTTTTTTTTTTTCCAAGGAAAAACAATGTGGGCCAAAGTTGACTCATAAGGTGTACAAATATAGATTAGACTTCTTCTGATAATTTCACCAACGAAAAAGATTATTTCTAGGTGGCTAGTTTTGATGCATATTTCTCTATGGAAATCTGAGGCAGATTCTTCGTTTCAAGAACTGAAAGCTTGGAAAACATTGAGTGAGTTTGGGTCTTTAAATCCGTTGTCATAGTATCCTGATGGATGTTCAATAGGGTTTCTGAAGAAAATAGGACTTCATAATTTACATTTGTAAATCAATTTATCACAGGCAAATGCAGCATCAGGGATGGCTGTGCATGATGATTGCAAGCTTAGGTTTCTGGATTTGAAGGCAAAAAGAACCTACCGTTTTATAGTTTTCAAGATTGAGGAAAAGCAGAAGCAAGTCGTGGTGGAAAAGCTTGGCGAGCCATCTCAAAGTTATGAGGACTTTGCTGCCAGCCTACCTGCTGATGAATGCCGATATGCGGTCTATGATTTCGATTTTGTGACTGAAGAGAATTGCCAGAAAAGCAGGATTATATTCATTGCCTGGTAAATGTACTACAAACGATTTCCTCACTCATTTTATGAATCTGCATTCTAACTCATCATCTATCAAATGCGATGTTTGAAGGTCTCCTGATACGTCAAGGGTGAGAAGCAAGATGATATACGCAAGCTCCAAGGACAGGTTCAAGAGGGAGTTGGACGGCATTCAAGTGGAGTTACAAGCAACTGATCCTACTGAGATGGGGCTTGATGTTATCAGAAGTCGGTCTGGCTTGTAGGAGGATTTGGCCGGCGAGTCATTGTGATGCAGAGCTGATGTTAATTACGTGAAATGTTCATAGATTGTGGGCTCGAAACTTGCTTTTATGCTATATGATATTGGCTTGTTCTTGAAAAGTTTCACCTAAGAGTTGTAAGGATGACTGCTTTTTTTGGCTTTCGTGGATTTAGTTGGTTGGATATTTTAAATGTGGCTGTGGGGTTTTACCGTCGATTACTTATGCAGGGTAAATATGGATCAATGCCCGTTTGAGTTTGTGAGGTTGGTTTTATGAAGAGAACCACTAGGAATAATTTGCAATGATTTTCGAGTTTCATGTGTTCCATTTTTTCTTATCCAAATCATTTCATGATTTCGTGTCATGACTTGCTATATCTTTGTGTTAGGCATACGTTTTCTGTGGAACTCTTCCAGTTCATGAATTTAAGGGTCGGATGCTTATTTTAATAGGTTTCTCGTTTAATGTCTAATAAGTTATTGAACTTTAACGTCACGTTTTATGCCCG

mRNA sequence

ATGTTCGGTTTCTTAGCCGTCTGGGTGATATTATCAATCGCCACCACCCTCCGGTCGAATCTCTTAGGCCTTGCGCGGTACAGCCCTCGTTTCCCATCCCATCGTCTTCCTCTCTTCACCCACGCTTCTATCTTCTTTATCGTCTCGTCTGTGGAAGCCCTAAATTTTCTCAACCTTTCTCGCCCTTTCTTTCGCTTTCTCGGGAAAATGGCAAATGCAGCATCAGGGATGGCTGTGCATGATGATTGCAAGCTTAGGTTTCTGGATTTGAAGGCAAAAAGAACCTACCGTTTTATAGTTTTCAAGATTGAGGAAAAGCAGAAGCAAGTCGTGGTGGAAAAGCTTGGCGAGCCATCTCAAAGTTATGAGGACTTTGCTGCCAGCCTACCTGCTGATGAATGCCGATATGCGGTCTATGATTTCGATTTTGTGACTGAAGAGAATTGCCAGAAAAGCAGGATTATATTCATTGCCTGGTCTCCTGATACGTCAAGGGTGAGAAGCAAGATGATATACGCAAGCTCCAAGGACAGGTTCAAGAGGGAGTTGGACGGCATTCAAGTGGAGTTACAAGCAACTGATCCTACTGAGATGGGGCTTGATGTTATCAGAAGTCGGTCTGGCTTGTAGGAGGATTTGGCCGGCGAGTCATTGTGATGCAGAGCTGATGTTAATTACGTGAAATGTTCATAGATTGTGGGCTCGAAACTTGCTTTTATGCTATATGATATTGGCTTGTTCTTGAAAAGTTTCACCTAAGAGTTGTAAGGATGACTGCTTTTTTTGGCTTTCGTGGATTTAGTTGGTTGGATATTTTAAATGTGGCTGTGGGGTTTTACCGTCGATTACTTATGCAGGGTAAATATGGATCAATGCCCGTTTGAGTTTGTGAGGTTGGTTTTATGAAGAGAACCACTAGGAATAATTTGCAATGATTTTCGAGTTTCATGTGTTCCATTTTTTCTTATCCAAATCATTTCATGATTTCGTGTCATGACTTGCTATATCTTTGTGTTAGGCATACGTTTTCTGTGGAACTCTTCCAGTTCATGAATTTAAGGGTCGGATGCTTATTTTAATAGGTTTCTCGTTTAATGTCTAATAAGTTATTGAACTTTAACGTCACGTTTTATGCCCG

Coding sequence (CDS)

ATGTTCGGTTTCTTAGCCGTCTGGGTGATATTATCAATCGCCACCACCCTCCGGTCGAATCTCTTAGGCCTTGCGCGGTACAGCCCTCGTTTCCCATCCCATCGTCTTCCTCTCTTCACCCACGCTTCTATCTTCTTTATCGTCTCGTCTGTGGAAGCCCTAAATTTTCTCAACCTTTCTCGCCCTTTCTTTCGCTTTCTCGGGAAAATGGCAAATGCAGCATCAGGGATGGCTGTGCATGATGATTGCAAGCTTAGGTTTCTGGATTTGAAGGCAAAAAGAACCTACCGTTTTATAGTTTTCAAGATTGAGGAAAAGCAGAAGCAAGTCGTGGTGGAAAAGCTTGGCGAGCCATCTCAAAGTTATGAGGACTTTGCTGCCAGCCTACCTGCTGATGAATGCCGATATGCGGTCTATGATTTCGATTTTGTGACTGAAGAGAATTGCCAGAAAAGCAGGATTATATTCATTGCCTGGTCTCCTGATACGTCAAGGGTGAGAAGCAAGATGATATACGCAAGCTCCAAGGACAGGTTCAAGAGGGAGTTGGACGGCATTCAAGTGGAGTTACAAGCAACTGATCCTACTGAGATGGGGCTTGATGTTATCAGAAGTCGGTCTGGCTTGTAG

Homology

[Close]

BLAST of CmoCh04G027510.1 vs. Swiss-Prot
Match: ADF2_PETHY (Actin-depolymerizing factor 2 OS=Petunia hybrida GN=ADF2 PE=2 SV=1)

HSP 1 Score: 254.6 bits (649), Expect = 9.4e-67
Identity = 123/139 (88.49%), Postives = 134/139 (96.40%), Query Frame = 1


Query: 70  MANAASGMAVHDDCKLRFLDLKAKRTYRFIVFKIEEKQKQVVVEKLGEPSQSYEDFAASL 129
           MANAASGMAVHDDCKL+FL+LKAKRTYRFI++KIEEKQK+VVVEKLGEP++SYEDF A L
Sbjct: 1   MANAASGMAVHDDCKLKFLELKAKRTYRFIIYKIEEKQKEVVVEKLGEPTESYEDFTAGL 60

Query: 130 PADECRYAVYDFDFVTEENCQKSRIIFIAWSPDTSRVRSKMIYASSKDRFKRELDGIQVE 189
           PADECRYAVYDFDF+T+EN QKSRI FIAWSPDT+RVRSKMIYASSKDRFKRELDGIQVE
Sbjct: 61  PADECRYAVYDFDFMTKENHQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVE 120

Query: 190 LQATDPTEMGLDVIRSRSG 209
           LQATDPTEMGLDV RSR+G
Sbjct: 121 LQATDPTEMGLDVFRSRAG 139

[Close]

BLAST of CmoCh04G027510.1 vs. Swiss-Prot
Match: ADF1_PETHY (Actin-depolymerizing factor 1 OS=Petunia hybrida GN=ADF1 PE=2 SV=1)

HSP 1 Score: 251.9 bits (642), Expect = 6.1e-66
Identity = 123/138 (89.13%), Postives = 133/138 (96.38%), Query Frame = 1


Query: 70  MANAASGMAVHDDCKLRFLDLKAKRTYRFIVFKIEEKQKQVVVEKLGEPSQSYEDFAASL 129
           MANAASGMAVHDDCKLRFL+LKAKRT+RFIV+KIEEKQKQVVVEK+GEP++SYEDFAASL
Sbjct: 1   MANAASGMAVHDDCKLRFLELKAKRTHRFIVYKIEEKQKQVVVEKIGEPTESYEDFAASL 60

Query: 130 PADECRYAVYDFDFVTEENCQKSRIIFIAWSPDTSRVRSKMIYASSKDRFKRELDGIQVE 189
           P +ECRYAVYDFDFVT ENCQKSRI FIAW PDT+RVRSKMIYASSKDRFKRELDGIQVE
Sbjct: 61  PENECRYAVYDFDFVTAENCQKSRIFFIAWCPDTARVRSKMIYASSKDRFKRELDGIQVE 120

Query: 190 LQATDPTEMGLDVIRSRS 208
           LQA DPTEMGLDVI+SR+
Sbjct: 121 LQACDPTEMGLDVIQSRA 138

[Close]

BLAST of CmoCh04G027510.1 vs. Swiss-Prot
Match: ADF4_ARATH (Actin-depolymerizing factor 4 OS=Arabidopsis thaliana GN=ADF4 PE=1 SV=2)

HSP 1 Score: 245.4 bits (625), Expect = 5.7e-64
Identity = 118/137 (86.13%), Postives = 130/137 (94.89%), Query Frame = 1


Query: 70  MANAASGMAVHDDCKLRFLDLKAKRTYRFIVFKIEEKQKQVVVEKLGEPSQSYEDFAASL 129
           MANAASGMAVHDDCKLRFL+LKAKRT+RFIV+KIEEKQKQV+VEK+GEP  +YEDFAASL
Sbjct: 1   MANAASGMAVHDDCKLRFLELKAKRTHRFIVYKIEEKQKQVIVEKVGEPILTYEDFAASL 60

Query: 130 PADECRYAVYDFDFVTEENCQKSRIIFIAWSPDTSRVRSKMIYASSKDRFKRELDGIQVE 189
           PADECRYA+YDFDFVT ENCQKS+I FIAW PD ++VRSKMIYASSKDRFKRELDGIQVE
Sbjct: 61  PADECRYAIYDFDFVTAENCQKSKIFFIAWCPDVAKVRSKMIYASSKDRFKRELDGIQVE 120

Query: 190 LQATDPTEMGLDVIRSR 207
           LQATDPTEM LDV++SR
Sbjct: 121 LQATDPTEMDLDVLKSR 137

[Close]

BLAST of CmoCh04G027510.1 vs. Swiss-Prot
Match: ADF1_ARATH (Actin-depolymerizing factor 1 OS=Arabidopsis thaliana GN=ADF1 PE=1 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 1.3e-63
Identity = 118/138 (85.51%), Postives = 130/138 (94.20%), Query Frame = 1


Query: 70  MANAASGMAVHDDCKLRFLDLKAKRTYRFIVFKIEEKQKQVVVEKLGEPSQSYEDFAASL 129
           MANAASGMAVHDDCKLRFL+LKAKRT+RFIV+KIEEKQKQVVVEK+G+P Q+YE+FAA L
Sbjct: 1   MANAASGMAVHDDCKLRFLELKAKRTHRFIVYKIEEKQKQVVVEKVGQPIQTYEEFAACL 60

Query: 130 PADECRYAVYDFDFVTEENCQKSRIIFIAWSPDTSRVRSKMIYASSKDRFKRELDGIQVE 189
           PADECRYA+YDFDFVT ENCQKS+I FIAW PD ++VRSKMIYASSKDRFKRELDGIQVE
Sbjct: 61  PADECRYAIYDFDFVTAENCQKSKIFFIAWCPDIAKVRSKMIYASSKDRFKRELDGIQVE 120

Query: 190 LQATDPTEMGLDVIRSRS 208
           LQATDPTEM LDV RSR+
Sbjct: 121 LQATDPTEMDLDVFRSRA 138

[Close]

BLAST of CmoCh04G027510.1 vs. Swiss-Prot
Match: ADF7_ORYSJ (Actin-depolymerizing factor 7 OS=Oryza sativa subsp. japonica GN=ADF7 PE=3 SV=2)

HSP 1 Score: 241.1 bits (614), Expect = 1.1e-62
Identity = 115/138 (83.33%), Postives = 132/138 (95.65%), Query Frame = 1


Query: 70  MANAASGMAVHDDCKLRFLDLKAKRTYRFIVFKIEEKQKQVVVEKLGEPSQSYEDFAASL 129
           MANAASGMAV D+CKL+FL+LKAKRTYRFI++KI+EK+K VVVEK+GEP  +Y+DFAASL
Sbjct: 1   MANAASGMAVDDECKLKFLELKAKRTYRFIIYKIDEKKKMVVVEKVGEPVLNYDDFAASL 60

Query: 130 PADECRYAVYDFDFVTEENCQKSRIIFIAWSPDTSRVRSKMIYASSKDRFKRELDGIQVE 189
           PA+ECRYA++D+DFVTEENCQKS+I FIAWSPDTSRVRSKMIYASSKDRFKRELDGIQVE
Sbjct: 61  PANECRYAIFDYDFVTEENCQKSKIFFIAWSPDTSRVRSKMIYASSKDRFKRELDGIQVE 120

Query: 190 LQATDPTEMGLDVIRSRS 208
           LQATDPTE+GLDVIR R+
Sbjct: 121 LQATDPTEVGLDVIRGRA 138

[Close]

BLAST of CmoCh04G027510.1 vs. TrEMBL
Match: A0A0A0KNQ1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G512870 PE=3 SV=1)

HSP 1 Score: 272.7 bits (696), Expect = 3.7e-70
Identity = 135/139 (97.12%), Postives = 138/139 (99.28%), Query Frame = 1


Query: 70  MANAASGMAVHDDCKLRFLDLKAKRTYRFIVFKIEEKQKQVVVEKLGEPSQSYEDFAASL 129
           MANAASGMAVHDDCKLRFLDLKAKRTYRFIVFKIEEKQKQVVVEKLG+PS+SYEDF ASL
Sbjct: 1   MANAASGMAVHDDCKLRFLDLKAKRTYRFIVFKIEEKQKQVVVEKLGKPSESYEDFTASL 60

Query: 130 PADECRYAVYDFDFVTEENCQKSRIIFIAWSPDTSRVRSKMIYASSKDRFKRELDGIQVE 189
           PADECRYAVYDFDFVTEENCQKSRIIFIAWSPDTS+VRSKMIYASSKDRFKRELDGIQVE
Sbjct: 61  PADECRYAVYDFDFVTEENCQKSRIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQVE 120

Query: 190 LQATDPTEMGLDVIRSRSG 209
           LQATDPTEMGLDVIRSRSG
Sbjct: 121 LQATDPTEMGLDVIRSRSG 139

[Close]

BLAST of CmoCh04G027510.1 vs. TrEMBL
Match: A0A0U4JRK1_ZIZJJ (Actin-depolymerizing factor 1 OS=Ziziphus jujuba GN=ACT1 PE=2 SV=1)

HSP 1 Score: 266.2 bits (679), Expect = 3.5e-68
Identity = 132/137 (96.35%), Postives = 136/137 (99.27%), Query Frame = 1


Query: 71  ANAASGMAVHDDCKLRFLDLKAKRTYRFIVFKIEEKQKQVVVEKLGEPSQSYEDFAASLP 130
           ANAASGMAVHDDCKL+FL+LKAKRTYRFIVFKIEEKQKQVVVEKLGEPSQSYEDF+ASLP
Sbjct: 202 ANAASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVVVEKLGEPSQSYEDFSASLP 261

Query: 131 ADECRYAVYDFDFVTEENCQKSRIIFIAWSPDTSRVRSKMIYASSKDRFKRELDGIQVEL 190
           A+ECRYAVYDFDFVTEENCQKSRIIFIAWSPD SRVRSKMIYASSKDRFKRELDGIQVEL
Sbjct: 262 ANECRYAVYDFDFVTEENCQKSRIIFIAWSPDASRVRSKMIYASSKDRFKRELDGIQVEL 321

Query: 191 QATDPTEMGLDVIRSRS 208
           QATDPTEMGLDVIRSRS
Sbjct: 322 QATDPTEMGLDVIRSRS 338

[Close]

BLAST of CmoCh04G027510.1 vs. TrEMBL
Match: A0A0D2SKK5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G264800 PE=3 SV=1)

HSP 1 Score: 265.0 bits (676), Expect = 7.7e-68
Identity = 131/138 (94.93%), Postives = 135/138 (97.83%), Query Frame = 1


Query: 70  MANAASGMAVHDDCKLRFLDLKAKRTYRFIVFKIEEKQKQVVVEKLGEPSQSYEDFAASL 129
           MANAASGMAVHDDCKL+FL+LKAKRTYRFIVFKIEEKQKQVVVEKLGEPSQSY+DF ASL
Sbjct: 1   MANAASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVVVEKLGEPSQSYDDFTASL 60

Query: 130 PADECRYAVYDFDFVTEENCQKSRIIFIAWSPDTSRVRSKMIYASSKDRFKRELDGIQVE 189
           PADECRYAVYDFDFVT ENCQKSRI FIAWSPDTSRVRSKMIYASSKDRFKRELDGIQVE
Sbjct: 61  PADECRYAVYDFDFVTAENCQKSRIFFIAWSPDTSRVRSKMIYASSKDRFKRELDGIQVE 120

Query: 190 LQATDPTEMGLDVIRSRS 208
           LQATDPTEMGLDVIRSR+
Sbjct: 121 LQATDPTEMGLDVIRSRA 138

[Close]

BLAST of CmoCh04G027510.1 vs. TrEMBL
Match: A0A061GW84_THECC (Actin depolymerizing factor 4 OS=Theobroma cacao GN=TCM_041889 PE=3 SV=1)

HSP 1 Score: 265.0 bits (676), Expect = 7.7e-68
Identity = 131/138 (94.93%), Postives = 135/138 (97.83%), Query Frame = 1


Query: 70  MANAASGMAVHDDCKLRFLDLKAKRTYRFIVFKIEEKQKQVVVEKLGEPSQSYEDFAASL 129
           MANAASGMAVHDDCKL+FL+LKAKRTYRFIVFKIEEKQKQVVVEKLGEP+QSYEDF ASL
Sbjct: 1   MANAASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVVVEKLGEPTQSYEDFTASL 60

Query: 130 PADECRYAVYDFDFVTEENCQKSRIIFIAWSPDTSRVRSKMIYASSKDRFKRELDGIQVE 189
           PADECRYAVYDFDFVT ENCQKSRI FIAWSPDTSRVRSKMIYASSKDRFKRELDGIQVE
Sbjct: 61  PADECRYAVYDFDFVTAENCQKSRIFFIAWSPDTSRVRSKMIYASSKDRFKRELDGIQVE 120

Query: 190 LQATDPTEMGLDVIRSRS 208
           LQATDPTEMGLDVIRSR+
Sbjct: 121 LQATDPTEMGLDVIRSRA 138

[Close]

BLAST of CmoCh04G027510.1 vs. TrEMBL
Match: A0A0B0N468_GOSAR (Actin-depolymerizing factor 1 OS=Gossypium arboreum GN=F383_06723 PE=3 SV=1)

HSP 1 Score: 265.0 bits (676), Expect = 7.7e-68
Identity = 131/138 (94.93%), Postives = 135/138 (97.83%), Query Frame = 1


Query: 70  MANAASGMAVHDDCKLRFLDLKAKRTYRFIVFKIEEKQKQVVVEKLGEPSQSYEDFAASL 129
           MANAASGMAVHDDCKL+FL+LKAKRTYRFIVFKIEEKQKQVVVEKLGEPSQSY+DF ASL
Sbjct: 1   MANAASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVVVEKLGEPSQSYDDFTASL 60

Query: 130 PADECRYAVYDFDFVTEENCQKSRIIFIAWSPDTSRVRSKMIYASSKDRFKRELDGIQVE 189
           PADECRYAVYDFDFVT ENCQKSRI FIAWSPDTSRVRSKMIYASSKDRFKRELDGIQVE
Sbjct: 61  PADECRYAVYDFDFVTAENCQKSRIFFIAWSPDTSRVRSKMIYASSKDRFKRELDGIQVE 120

Query: 190 LQATDPTEMGLDVIRSRS 208
           LQATDPTEMGLDVIRSR+
Sbjct: 121 LQATDPTEMGLDVIRSRA 138

[Close]

BLAST of CmoCh04G027510.1 vs. TAIR10
Match: AT3G46010.2 (AT3G46010.2 actin depolymerizing factor 1)

HSP 1 Score: 246.5 bits (628), Expect = 1.4e-65
Identity = 119/144 (82.64%), Postives = 132/144 (91.67%), Query Frame = 1


Query: 64  FRFLGKMANAASGMAVHDDCKLRFLDLKAKRTYRFIVFKIEEKQKQVVVEKLGEPSQSYE 123
           F  L + ANAASGMAVHDDCKLRFL+LKAKRT+RFIV+KIEEKQKQVVVEK+G+P Q+YE
Sbjct: 6   FHLLSRSANAASGMAVHDDCKLRFLELKAKRTHRFIVYKIEEKQKQVVVEKVGQPIQTYE 65

Query: 124 DFAASLPADECRYAVYDFDFVTEENCQKSRIIFIAWSPDTSRVRSKMIYASSKDRFKREL 183
           +FAA LPADECRYA+YDFDFVT ENCQKS+I FIAW PD ++VRSKMIYASSKDRFKREL
Sbjct: 66  EFAACLPADECRYAIYDFDFVTAENCQKSKIFFIAWCPDIAKVRSKMIYASSKDRFKREL 125

Query: 184 DGIQVELQATDPTEMGLDVIRSRS 208
           DGIQVELQATDPTEM LDV RSR+
Sbjct: 126 DGIQVELQATDPTEMDLDVFRSRA 149

[Close]

BLAST of CmoCh04G027510.1 vs. TAIR10
Match: AT5G59890.1 (AT5G59890.1 actin depolymerizing factor 4)

HSP 1 Score: 245.4 bits (625), Expect = 3.2e-65
Identity = 118/137 (86.13%), Postives = 130/137 (94.89%), Query Frame = 1


Query: 70  MANAASGMAVHDDCKLRFLDLKAKRTYRFIVFKIEEKQKQVVVEKLGEPSQSYEDFAASL 129
           MANAASGMAVHDDCKLRFL+LKAKRT+RFIV+KIEEKQKQV+VEK+GEP  +YEDFAASL
Sbjct: 1   MANAASGMAVHDDCKLRFLELKAKRTHRFIVYKIEEKQKQVIVEKVGEPILTYEDFAASL 60

Query: 130 PADECRYAVYDFDFVTEENCQKSRIIFIAWSPDTSRVRSKMIYASSKDRFKRELDGIQVE 189
           PADECRYA+YDFDFVT ENCQKS+I FIAW PD ++VRSKMIYASSKDRFKRELDGIQVE
Sbjct: 61  PADECRYAIYDFDFVTAENCQKSKIFFIAWCPDVAKVRSKMIYASSKDRFKRELDGIQVE 120

Query: 190 LQATDPTEMGLDVIRSR 207
           LQATDPTEM LDV++SR
Sbjct: 121 LQATDPTEMDLDVLKSR 137

[Close]

BLAST of CmoCh04G027510.1 vs. TAIR10
Match: AT3G46000.1 (AT3G46000.1 actin depolymerizing factor 2)

HSP 1 Score: 237.7 bits (605), Expect = 6.7e-63
Identity = 114/138 (82.61%), Postives = 129/138 (93.48%), Query Frame = 1


Query: 70  MANAASGMAVHDDCKLRFLDLKAKRTYRFIVFKIEEKQKQVVVEKLGEPSQSYEDFAASL 129
           MANAASGMAVHDDCKL+F++LKAKRT+R IV+KIE+  KQV+VEKLGEP QSY+DFAASL
Sbjct: 1   MANAASGMAVHDDCKLKFMELKAKRTFRTIVYKIED--KQVIVEKLGEPEQSYDDFAASL 60

Query: 130 PADECRYAVYDFDFVTEENCQKSRIIFIAWSPDTSRVRSKMIYASSKDRFKRELDGIQVE 189
           PAD+CRY +YDFDFVT ENCQKS+I FIAWSPDT++VR KMIYASSKDRFKRELDGIQVE
Sbjct: 61  PADDCRYCIYDFDFVTAENCQKSKIFFIAWSPDTAKVRDKMIYASSKDRFKRELDGIQVE 120

Query: 190 LQATDPTEMGLDVIRSRS 208
           LQATDPTEMGLDV +SR+
Sbjct: 121 LQATDPTEMGLDVFKSRT 136

[Close]

BLAST of CmoCh04G027510.1 vs. TAIR10
Match: AT5G59880.1 (AT5G59880.1 actin depolymerizing factor 3)

HSP 1 Score: 231.5 bits (589), Expect = 4.8e-61
Identity = 109/138 (78.99%), Postives = 127/138 (92.03%), Query Frame = 1


Query: 70  MANAASGMAVHDDCKLRFLDLKAKRTYRFIVFKIEEKQKQVVVEKLGEPSQSYEDFAASL 129
           MANAASGMAVHDDCKL+F++LK KRT+RFI++KIEE QKQV+VEK+GEP Q++ED AASL
Sbjct: 1   MANAASGMAVHDDCKLKFMELKTKRTHRFIIYKIEELQKQVIVEKIGEPGQTHEDLAASL 60

Query: 130 PADECRYAVYDFDFVTEENCQKSRIIFIAWSPDTSRVRSKMIYASSKDRFKRELDGIQVE 189
           PADECRYA++DFDFV+ E   +SRI F+AWSPDT+RVRSKMIYASSKDRFKRELDGIQVE
Sbjct: 61  PADECRYAIFDFDFVSSEGVPRSRIFFVAWSPDTARVRSKMIYASSKDRFKRELDGIQVE 120

Query: 190 LQATDPTEMGLDVIRSRS 208
           LQATDPTEM LDV +SR+
Sbjct: 121 LQATDPTEMDLDVFKSRA 138

[Close]

BLAST of CmoCh04G027510.1 vs. TAIR10
Match: AT4G00680.1 (AT4G00680.1 actin depolymerizing factor 8)

HSP 1 Score: 228.0 bits (580), Expect = 5.3e-60
Identity = 105/140 (75.00%), Postives = 127/140 (90.71%), Query Frame = 1


Query: 70  MANAASGMAVHDDCKLRFLDLKAKRTYRFIVFKIEEKQKQVVVEKLGEPSQSYEDFAASL 129
           MAN+ASGM V+D+CK++FL+LKAKRTYRFIVFKI+EK +QV +EKLG P ++Y+DF +S+
Sbjct: 1   MANSASGMHVNDECKIKFLELKAKRTYRFIVFKIDEKAQQVQIEKLGNPEETYDDFTSSI 60

Query: 130 PADECRYAVYDFDFVTEENCQKSRIIFIAWSPDTSRVRSKMIYASSKDRFKRELDGIQVE 189
           P DECRYAVYDFDF TE+NCQKS+I FIAWSPDTSRVRSKM+YASSKDRFKRE++GIQVE
Sbjct: 61  PDDECRYAVYDFDFTTEDNCQKSKIFFIAWSPDTSRVRSKMLYASSKDRFKREMEGIQVE 120

Query: 190 LQATDPTEMGLDVIRSRSGL 210
           LQATDP+EM LD+I+ R  L
Sbjct: 121 LQATDPSEMSLDIIKGRLNL 140

[Close]

BLAST of CmoCh04G027510.1 vs. NCBI nr
Match: gi|659127012|ref|XP_008463478.1| (PREDICTED: actin-depolymerizing factor 2 isoform X1 [Cucumis melo])

HSP 1 Score: 274.2 bits (700), Expect = 1.8e-70
Identity = 136/139 (97.84%), Postives = 138/139 (99.28%), Query Frame = 1


Query: 70  MANAASGMAVHDDCKLRFLDLKAKRTYRFIVFKIEEKQKQVVVEKLGEPSQSYEDFAASL 129
           MANAASGMAVHDDCKLRFLDLKAKRTYRFIVFKIEEKQKQVVVEKLGEPS+SYEDF ASL
Sbjct: 1   MANAASGMAVHDDCKLRFLDLKAKRTYRFIVFKIEEKQKQVVVEKLGEPSESYEDFTASL 60

Query: 130 PADECRYAVYDFDFVTEENCQKSRIIFIAWSPDTSRVRSKMIYASSKDRFKRELDGIQVE 189
           PADECRYAVYDFDFVTEENCQKSRIIFIAWSPDTS+VRSKMIYASSKDRFKRELDGIQVE
Sbjct: 61  PADECRYAVYDFDFVTEENCQKSRIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQVE 120

Query: 190 LQATDPTEMGLDVIRSRSG 209
           LQATDPTEMGLDVIRSRSG
Sbjct: 121 LQATDPTEMGLDVIRSRSG 139

[Close]

BLAST of CmoCh04G027510.1 vs. NCBI nr
Match: gi|449449972|ref|XP_004142738.1| (PREDICTED: actin-depolymerizing factor 2 isoform X1 [Cucumis sativus])

HSP 1 Score: 272.7 bits (696), Expect = 5.3e-70
Identity = 135/139 (97.12%), Postives = 138/139 (99.28%), Query Frame = 1


Query: 70  MANAASGMAVHDDCKLRFLDLKAKRTYRFIVFKIEEKQKQVVVEKLGEPSQSYEDFAASL 129
           MANAASGMAVHDDCKLRFLDLKAKRTYRFIVFKIEEKQKQVVVEKLG+PS+SYEDF ASL
Sbjct: 1   MANAASGMAVHDDCKLRFLDLKAKRTYRFIVFKIEEKQKQVVVEKLGKPSESYEDFTASL 60

Query: 130 PADECRYAVYDFDFVTEENCQKSRIIFIAWSPDTSRVRSKMIYASSKDRFKRELDGIQVE 189
           PADECRYAVYDFDFVTEENCQKSRIIFIAWSPDTS+VRSKMIYASSKDRFKRELDGIQVE
Sbjct: 61  PADECRYAVYDFDFVTEENCQKSRIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQVE 120

Query: 190 LQATDPTEMGLDVIRSRSG 209
           LQATDPTEMGLDVIRSRSG
Sbjct: 121 LQATDPTEMGLDVIRSRSG 139

[Close]

BLAST of CmoCh04G027510.1 vs. NCBI nr
Match: gi|296086270|emb|CBI31711.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 269.2 bits (687), Expect = 5.9e-69
Identity = 136/161 (84.47%), Postives = 146/161 (90.68%), Query Frame = 1


Query: 51  VEALNFLNLSRPFFRFLG----KMANAASGMAVHDDCKLRFLDLKAKRTYRFIVFKIEEK 110
           VE+L       PFF FL     +MANAASGMAVHDDCKL+FL+LKAKRTYR IVF+IEEK
Sbjct: 41  VESLPHFLFLAPFFHFLSLLLARMANAASGMAVHDDCKLKFLELKAKRTYRSIVFQIEEK 100

Query: 111 QKQVVVEKLGEPSQSYEDFAASLPADECRYAVYDFDFVTEENCQKSRIIFIAWSPDTSRV 170
           QKQV+VEK+GEP+QSYEDFAASLPADECRYAVYDFDFVTEENCQKSRI FIAWSPDTSRV
Sbjct: 101 QKQVIVEKVGEPTQSYEDFAASLPADECRYAVYDFDFVTEENCQKSRIFFIAWSPDTSRV 160

Query: 171 RSKMIYASSKDRFKRELDGIQVELQATDPTEMGLDVIRSRS 208
           RSKMIYASSKDRFKRELDGIQVELQATDPTE+GLDVIRSR+
Sbjct: 161 RSKMIYASSKDRFKRELDGIQVELQATDPTEIGLDVIRSRA 201

[Close]

BLAST of CmoCh04G027510.1 vs. NCBI nr
Match: gi|1009120557|ref|XP_015876986.1| (PREDICTED: actin-depolymerizing factor 1-like isoform X7 [Ziziphus jujuba])

HSP 1 Score: 267.7 bits (683), Expect = 1.7e-68
Identity = 133/138 (96.38%), Postives = 137/138 (99.28%), Query Frame = 1


Query: 70  MANAASGMAVHDDCKLRFLDLKAKRTYRFIVFKIEEKQKQVVVEKLGEPSQSYEDFAASL 129
           MANAASGMAVHDDCKL+FL+LKAKRTYRFIVFKIEEKQKQVVVEKLGEPSQSYEDF+ASL
Sbjct: 1   MANAASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVVVEKLGEPSQSYEDFSASL 60

Query: 130 PADECRYAVYDFDFVTEENCQKSRIIFIAWSPDTSRVRSKMIYASSKDRFKRELDGIQVE 189
           PA+ECRYAVYDFDFVTEENCQKSRIIFIAWSPD SRVRSKMIYASSKDRFKRELDGIQVE
Sbjct: 61  PANECRYAVYDFDFVTEENCQKSRIIFIAWSPDASRVRSKMIYASSKDRFKRELDGIQVE 120

Query: 190 LQATDPTEMGLDVIRSRS 208
           LQATDPTEMGLDVIRSRS
Sbjct: 121 LQATDPTEMGLDVIRSRS 138

[Close]

BLAST of CmoCh04G027510.1 vs. NCBI nr
Match: gi|702241997|ref|XP_010047513.1| (PREDICTED: actin-depolymerizing factor 2 [Eucalyptus grandis])

HSP 1 Score: 267.3 bits (682), Expect = 2.2e-68
Identity = 132/138 (95.65%), Postives = 136/138 (98.55%), Query Frame = 1


Query: 70  MANAASGMAVHDDCKLRFLDLKAKRTYRFIVFKIEEKQKQVVVEKLGEPSQSYEDFAASL 129
           MANAASGMAVHDDCKLRFL+LKAKRTYRFIVFKIEEKQKQVVVEK+GEP+QSYEDF ASL
Sbjct: 1   MANAASGMAVHDDCKLRFLELKAKRTYRFIVFKIEEKQKQVVVEKVGEPTQSYEDFTASL 60

Query: 130 PADECRYAVYDFDFVTEENCQKSRIIFIAWSPDTSRVRSKMIYASSKDRFKRELDGIQVE 189
           PADECRYAVYDFDFVTEENCQKSRI FIAWSPDTSRVRSKMIYASSKDRFKRELDGIQVE
Sbjct: 61  PADECRYAVYDFDFVTEENCQKSRIFFIAWSPDTSRVRSKMIYASSKDRFKRELDGIQVE 120

Query: 190 LQATDPTEMGLDVIRSRS 208
           LQATDPTEMGLDVIRSR+
Sbjct: 121 LQATDPTEMGLDVIRSRA 138

The following BLAST results are available for this feature:

BLAST of CmoCh04G027510.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ADF2_PETHY	9.4e-67	88.49	Actin-depolymerizing factor 2 OS=Petunia hybrida GN=ADF2 PE=2 SV=1	[more]
ADF1_PETHY	6.1e-66	89.13	Actin-depolymerizing factor 1 OS=Petunia hybrida GN=ADF1 PE=2 SV=1	[more]
ADF4_ARATH	5.7e-64	86.13	Actin-depolymerizing factor 4 OS=Arabidopsis thaliana GN=ADF4 PE=1 SV=2	[more]
ADF1_ARATH	1.3e-63	85.51	Actin-depolymerizing factor 1 OS=Arabidopsis thaliana GN=ADF1 PE=1 SV=1	[more]
ADF7_ORYSJ	1.1e-62	83.33	Actin-depolymerizing factor 7 OS=Oryza sativa subsp. japonica GN=ADF7 PE=3 SV=2	[more]

BLAST of CmoCh04G027510.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KNQ1_CUCSA	3.7e-70	97.12	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G512870 PE=3 SV=1	[more]
A0A0U4JRK1_ZIZJJ	3.5e-68	96.35	Actin-depolymerizing factor 1 OS=Ziziphus jujuba GN=ACT1 PE=2 SV=1	[more]
A0A0D2SKK5_GOSRA	7.7e-68	94.93	Uncharacterized protein OS=Gossypium raimondii GN=B456_013G264800 PE=3 SV=1	[more]
A0A061GW84_THECC	7.7e-68	94.93	Actin depolymerizing factor 4 OS=Theobroma cacao GN=TCM_041889 PE=3 SV=1	[more]
A0A0B0N468_GOSAR	7.7e-68	94.93	Actin-depolymerizing factor 1 OS=Gossypium arboreum GN=F383_06723 PE=3 SV=1	[more]

BLAST of CmoCh04G027510.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G46010.2	1.4e-65	82.64	actin depolymerizing factor 1	[more]
AT5G59890.1	3.2e-65	86.13	actin depolymerizing factor 4	[more]
AT3G46000.1	6.7e-63	82.61	actin depolymerizing factor 2	[more]
AT5G59880.1	4.8e-61	78.99	actin depolymerizing factor 3	[more]
AT4G00680.1	5.3e-60	75.00	actin depolymerizing factor 8	[more]

BLAST of CmoCh04G027510.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659127012\|ref\|XP_008463478.1\|	1.8e-70	97.84	PREDICTED: actin-depolymerizing factor 2 isoform X1 [Cucumis melo]	[more]
gi\|449449972\|ref\|XP_004142738.1\|	5.3e-70	97.12	PREDICTED: actin-depolymerizing factor 2 isoform X1 [Cucumis sativus]	[more]
gi\|296086270\|emb\|CBI31711.3\|	5.9e-69	84.47	unnamed protein product [Vitis vinifera]	[more]
gi\|1009120557\|ref\|XP_015876986.1\|	1.7e-68	96.38	PREDICTED: actin-depolymerizing factor 1-like isoform X7 [Ziziphus jujuba]	[more]
gi\|702241997\|ref\|XP_010047513.1\|	2.2e-68	95.65	PREDICTED: actin-depolymerizing factor 2 [Eucalyptus grandis]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR002108	ADF-H
IPR017904	ADF/Cofilin

Vocabulary: **Molecular Function**
Term	Definition
GO:0003779	actin binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0015629	actin cytoskeleton

Vocabulary: **Biological Process**
Term	Definition
GO:0030042	actin filament depolymerization

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030042	actin filament depolymerization
cellular_component	GO:0015629	actin cytoskeleton
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003779	actin binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh04G027510	CmoCh04G027510	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh04G027510.1	CmoCh04G027510.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh04G027510.1.exon.1	CmoCh04G027510.1.exon.1	exon
CmoCh04G027510.1.exon.2	CmoCh04G027510.1.exon.2	exon
CmoCh04G027510.1.exon.3	CmoCh04G027510.1.exon.3	exon
CmoCh04G027510.1.exon.4	CmoCh04G027510.1.exon.4	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh04G027510.1.CDS.1	CmoCh04G027510.1.CDS.1	CDS
CmoCh04G027510.1.CDS.2	CmoCh04G027510.1.CDS.2	CDS
CmoCh04G027510.1.CDS.3	CmoCh04G027510.1.CDS.3	CDS
CmoCh04G027510.1.CDS.4	CmoCh04G027510.1.CDS.4	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh04G027510.1.three_prime_UTR.1	CmoCh04G027510.1.three_prime_UTR.1	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002108	Actin-depolymerising factor homology domain	PFAM	PF00241	Cofilin_ADF	coord: 83..205 score: 2.0
IPR002108	Actin-depolymerising factor homology domain	SMART	SM00102	adf_2	coord: 81..208 score: 1.8
IPR002108	Actin-depolymerising factor homology domain	PROFILE	PS51263	ADF_H	coord: 74..208 score: 38
IPR017904	ADF/Cofilin/Destrin	PANTHER	PTHR11913	COFILIN-RELATED	coord: 71..206 score: 5.1E
None	No IPR available	PANTHER	PTHR11913:SF22	ACTIN-DEPOLYMERIZING FACTOR 1-RELATED	coord: 71..206 score: 5.1E
None	No IPR available	unknown	SSF55753	Actin depolymerizing proteins	coord: 70..206 score: 2.02