CmoCh04G026830.1 (mRNA) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G026830.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Transmembrane amino acid transporter family protein isoform 1
Location	Cmo_Chr04 : 19535225 .. 19536326 (+)
Sequence length	558

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGAAATTATAAAGAATATTCATGAGAAAAACAGAAATAAAGAGAGTCCACAGAAGGAAGAAGAAGCACGGATCGACAGACTTCACGATTCTCTCTCCCCAGGTTTGACATTTTTCCCTCTCTTTTTTTGCTTTTCACAAAACTTCATTATCAGATTTGATTCTTTCAATGCCGTTTCTTGTCTTGAACTTTCTGTAGGGCTCGTGATCTGTGTGAAATCGAACGTGATTTTGCTTCTGTTTTTTGTTTTTTCATTTTTAGTTACGTGAACTTCGGATTGGCGTTCGAATTTCAATTCATTTTCTATTTACCATAGCCTATAAGTATAATTTCTCGGCAGCCAAACAGTGTTCGGATACTTCAGATTTTCAGACACGATTAGAATTATAATTTTGAATTGATGTCAATTTGTAGCTTCTCGTTTTACAGTCATTTTTAGGCGGATTTCGTGGATTCTACTTGGAAAAATTGATTAAATAATGGTAATCATGATTTGATCGACGTTTTTGGCGCCTTAATTCTGATGTTTTCACTGATTATTTATTTGTTTGTTATTCCGTTTTCGGCGATTCAAGCTACTGGAAAAGGATTGGCATGTGTTTAATTATATCTGAAACTTTGTTTCTCTATCTTTTCTCTCTGCTTTGGATCTGTACTTTGTGGTGTACTTGATTGAGACTGATTAATTCTCAGTTGAAGGAACGAATTGCAACAAGGAGGAATTTGAATTTTGATAAGAAAATGAAGAACTCTGTGTCGGACCGAAGTTTTTACATCGAAAGTTCTGACGACGAAGATCTAGAAAAGGAACTCGACAATGGCGAAGACAATGGAAACGAATCGGATTCTTCCGGCTTATCGATGAATAATCAGAATCATAAACAATCAAGTTCTTACAATACCGCCGCTTGGCCTCGAAGTTACAGGTTCAGTTTCCCTCCGTTTCACCTCTTTCGTTCTTCATTCTGCAGATTTTATCCTTCCATTTCTTCTGCTTCAAATCTCCTTCGCCTAATAGTTAGATTAGAATCATTGGTGATTCACTTGAAAATTGAAATCACGAAAGTAAAATTTCCAGCGGGAATTTTGTTTTTCTAG

mRNA sequence

ATGGCTGAAATTATAAAGAATATTCATGAGAAAAACAGAAATAAAGAGAGTCCACAGAAGGAAGAAGAAGCACGGATCGACAGACTTCACGATTCTCTCTCCCCAGGGCTCGTGATCTGTGTGAAATCGAACTTACGTGAACTTCGGATTGGCTTGAAGGAACGAATTGCAACAAGGAGGAATTTGAATTTTGATAAGAAAATGAAGAACTCTGTGTCGGACCGAAGTTTTTACATCGAAAGTTCTGACGACGAAGATCTAGAAAAGGAACTCGACAATGGCGAAGACAATGGAAACGAATCGGATTCTTCCGGCTTATCGATGAATAATCAGAATCATAAACAATCAAGTTCTTACAATACCGCCGCTTGGCCTCGAAGTTACAGGTTCAGTTTCCCTCCGTTTCACCTCTTTCGTTCTTCATTCTGCAGATTTTATCCTTCCATTTCTTCTGCTTCAAATCTCCTTCGCCTAATAGTTAGATTAGAATCATTGGTGATTCACTTGAAAATTGAAATCACGAAAGTAAAATTTCCAGCGGGAATTTTGTTTTTCTAG

Coding sequence (CDS)

ATGGCTGAAATTATAAAGAATATTCATGAGAAAAACAGAAATAAAGAGAGTCCACAGAAGGAAGAAGAAGCACGGATCGACAGACTTCACGATTCTCTCTCCCCAGGGCTCGTGATCTGTGTGAAATCGAACTTACGTGAACTTCGGATTGGCTTGAAGGAACGAATTGCAACAAGGAGGAATTTGAATTTTGATAAGAAAATGAAGAACTCTGTGTCGGACCGAAGTTTTTACATCGAAAGTTCTGACGACGAAGATCTAGAAAAGGAACTCGACAATGGCGAAGACAATGGAAACGAATCGGATTCTTCCGGCTTATCGATGAATAATCAGAATCATAAACAATCAAGTTCTTACAATACCGCCGCTTGGCCTCGAAGTTACAGGTTCAGTTTCCCTCCGTTTCACCTCTTTCGTTCTTCATTCTGCAGATTTTATCCTTCCATTTCTTCTGCTTCAAATCTCCTTCGCCTAATAGTTAGATTAGAATCATTGGTGATTCACTTGAAAATTGAAATCACGAAAGTAAAATTTCCAGCGGGAATTTTGTTTTTCTAG

Homology

[Close]

BLAST of CmoCh04G026830.1 vs. TrEMBL
Match: A0A0A0KG55_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G406020 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 9.4e-17
Identity = 53/64 (82.81%), Postives = 58/64 (90.62%), Query Frame = 1


Query: 68  MKNSVSDRSFYIESSDDEDLEKELDNGEDNGNESDSSGLSMNNQNHKQSSSYNTAAWPRS 127
           MKNSVSDRSFYIESSDDEDLEKE+DN  ++GNESDSSGLS +NQNH Q SSYNTAAWP+S
Sbjct: 1   MKNSVSDRSFYIESSDDEDLEKEIDN--EDGNESDSSGLSADNQNHNQPSSYNTAAWPQS 60

Query: 128 YRFS 132
           YR S
Sbjct: 61  YRQS 62

[Close]

BLAST of CmoCh04G026830.1 vs. TrEMBL
Match: W9SI07_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_013031 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.0e-07
Identity = 40/64 (62.50%), Postives = 47/64 (73.44%), Query Frame = 1


Query: 68  MKNSVSDRSFYIESSDDEDLEKELDNGEDNGNESDSSGLSMNNQNHKQSSSYNTAAWPRS 127
           M NS SD SFYIES +++D EKE   GEDNGNESDSS  S+ NQ   + SSYNT +WP+S
Sbjct: 1   MNNSASDHSFYIESEEEDD-EKEFPKGEDNGNESDSSDYSVENQQQNKPSSYNT-SWPQS 60

Query: 128 YRFS 132
           YR S
Sbjct: 61  YRQS 62

[Close]

BLAST of CmoCh04G026830.1 vs. TrEMBL
Match: A0A061FNU8_THECC (Transmembrane amino acid transporter family protein isoform 4 OS=Theobroma cacao GN=TCM_043231 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 3.9e-07
Identity = 41/66 (62.12%), Postives = 48/66 (72.73%), Query Frame = 1


Query: 68  MKNSVSDRSFYIESSDDEDLEKELD--NGEDNGNESDSSGLSMNNQNHKQSSSYNTAAWP 127
           MKNSVSD+SFYIES D+ED EK  +   GED+GNESD S  S  NQ   + SSYNT +WP
Sbjct: 1   MKNSVSDQSFYIESEDEEDEEKVFNRHEGEDDGNESDVSDSSAENQQQNKPSSYNT-SWP 60

Query: 128 RSYRFS 132
           +SYR S
Sbjct: 61  QSYRQS 65

[Close]

BLAST of CmoCh04G026830.1 vs. TrEMBL
Match: A0A061FN63_THECC (Transmembrane amino acid transporter family protein isoform 3 OS=Theobroma cacao GN=TCM_043231 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 3.9e-07
Identity = 41/66 (62.12%), Postives = 48/66 (72.73%), Query Frame = 1


Query: 68  MKNSVSDRSFYIESSDDEDLEKELD--NGEDNGNESDSSGLSMNNQNHKQSSSYNTAAWP 127
           MKNSVSD+SFYIES D+ED EK  +   GED+GNESD S  S  NQ   + SSYNT +WP
Sbjct: 1   MKNSVSDQSFYIESEDEEDEEKVFNRHEGEDDGNESDVSDSSAENQQQNKPSSYNT-SWP 60

Query: 128 RSYRFS 132
           +SYR S
Sbjct: 61  QSYRQS 65

[Close]

BLAST of CmoCh04G026830.1 vs. TrEMBL
Match: A0A061FVB1_THECC (Transmembrane amino acid transporter family protein isoform 2 (Fragment) OS=Theobroma cacao GN=TCM_043231 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 3.9e-07
Identity = 41/66 (62.12%), Postives = 48/66 (72.73%), Query Frame = 1


Query: 68  MKNSVSDRSFYIESSDDEDLEKELD--NGEDNGNESDSSGLSMNNQNHKQSSSYNTAAWP 127
           MKNSVSD+SFYIES D+ED EK  +   GED+GNESD S  S  NQ   + SSYNT +WP
Sbjct: 1   MKNSVSDQSFYIESEDEEDEEKVFNRHEGEDDGNESDVSDSSAENQQQNKPSSYNT-SWP 60

Query: 128 RSYRFS 132
           +SYR S
Sbjct: 61  QSYRQS 65

[Close]

BLAST of CmoCh04G026830.1 vs. NCBI nr
Match: gi|700192635|gb|KGN47839.1| (hypothetical protein Csa_6G406020 [Cucumis sativus])

HSP 1 Score: 95.1 bits (235), Expect = 1.3e-16
Identity = 53/64 (82.81%), Postives = 58/64 (90.62%), Query Frame = 1


Query: 68  MKNSVSDRSFYIESSDDEDLEKELDNGEDNGNESDSSGLSMNNQNHKQSSSYNTAAWPRS 127
           MKNSVSDRSFYIESSDDEDLEKE+DN  ++GNESDSSGLS +NQNH Q SSYNTAAWP+S
Sbjct: 1   MKNSVSDRSFYIESSDDEDLEKEIDN--EDGNESDSSGLSADNQNHNQPSSYNTAAWPQS 60

Query: 128 YRFS 132
           YR S
Sbjct: 61  YRQS 62

[Close]

BLAST of CmoCh04G026830.1 vs. NCBI nr
Match: gi|449464366|ref|XP_004149900.1| (PREDICTED: vacuolar amino acid transporter 1-like [Cucumis sativus])

HSP 1 Score: 95.1 bits (235), Expect = 1.3e-16
Identity = 53/64 (82.81%), Postives = 58/64 (90.62%), Query Frame = 1


Query: 68  MKNSVSDRSFYIESSDDEDLEKELDNGEDNGNESDSSGLSMNNQNHKQSSSYNTAAWPRS 127
           MKNSVSDRSFYIESSDDEDLEKE+DN  ++GNESDSSGLS +NQNH Q SSYNTAAWP+S
Sbjct: 1   MKNSVSDRSFYIESSDDEDLEKEIDN--EDGNESDSSGLSADNQNHNQPSSYNTAAWPQS 60

Query: 128 YRFS 132
           YR S
Sbjct: 61  YRQS 62

[Close]

BLAST of CmoCh04G026830.1 vs. NCBI nr
Match: gi|659113316|ref|XP_008456512.1| (PREDICTED: vacuolar amino acid transporter 1-like [Cucumis melo])

HSP 1 Score: 91.3 bits (225), Expect = 1.9e-15
Identity = 61/95 (64.21%), Postives = 66/95 (69.47%), Query Frame = 1


Query: 68  MKNSVSDRSFYIESSDDEDLEKELDNGEDNGNESDSSGLSMNNQNHKQSSSYNTAAWPRS 127
           MKNSVSDRSFYIESSDDEDLEKE+DN  D+GNESDSSG S +NQNH Q SSY TAAWP+S
Sbjct: 1   MKNSVSDRSFYIESSDDEDLEKEIDN--DDGNESDSSGSSADNQNHNQPSSYTTAAWPQS 60

Query: 128 YRFSF--------PPFHLF-RSSFCRFYPSISSAS 154
           YR S         P   L   SS  RF  S  S+S
Sbjct: 61  YRQSIDMLGSVHSPSIGLLGTSSLARFGSSFLSSS 93

[Close]

BLAST of CmoCh04G026830.1 vs. NCBI nr
Match: gi|703159270|ref|XP_010112207.1| (hypothetical protein L484_013031 [Morus notabilis])

HSP 1 Score: 65.1 bits (157), Expect = 1.5e-07
Identity = 40/64 (62.50%), Postives = 47/64 (73.44%), Query Frame = 1


Query: 68  MKNSVSDRSFYIESSDDEDLEKELDNGEDNGNESDSSGLSMNNQNHKQSSSYNTAAWPRS 127
           M NS SD SFYIES +++D EKE   GEDNGNESDSS  S+ NQ   + SSYNT +WP+S
Sbjct: 1   MNNSASDHSFYIESEEEDD-EKEFPKGEDNGNESDSSDYSVENQQQNKPSSYNT-SWPQS 60

Query: 128 YRFS 132
           YR S
Sbjct: 61  YRQS 62

[Close]

BLAST of CmoCh04G026830.1 vs. NCBI nr
Match: gi|590565341|ref|XP_007009921.1| (Transmembrane amino acid transporter family protein isoform 4 [Theobroma cacao])

HSP 1 Score: 63.2 bits (152), Expect = 5.7e-07
Identity = 41/66 (62.12%), Postives = 48/66 (72.73%), Query Frame = 1


Query: 68  MKNSVSDRSFYIESSDDEDLEKELD--NGEDNGNESDSSGLSMNNQNHKQSSSYNTAAWP 127
           MKNSVSD+SFYIES D+ED EK  +   GED+GNESD S  S  NQ   + SSYNT +WP
Sbjct: 1   MKNSVSDQSFYIESEDEEDEEKVFNRHEGEDDGNESDVSDSSAENQQQNKPSSYNT-SWP 60

Query: 128 RSYRFS 132
           +SYR S
Sbjct: 61  QSYRQS 65

The following BLAST results are available for this feature:

BLAST of CmoCh04G026830.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh04G026830.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KG55_CUCSA	9.4e-17	82.81	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G406020 PE=4 SV=1	[more]
W9SI07_9ROSA	1.0e-07	62.50	Uncharacterized protein OS=Morus notabilis GN=L484_013031 PE=4 SV=1	[more]
A0A061FNU8_THECC	3.9e-07	62.12	Transmembrane amino acid transporter family protein isoform 4 OS=Theobroma cacao...	[more]
A0A061FN63_THECC	3.9e-07	62.12	Transmembrane amino acid transporter family protein isoform 3 OS=Theobroma cacao...	[more]
A0A061FVB1_THECC	3.9e-07	62.12	Transmembrane amino acid transporter family protein isoform 2 (Fragment) OS=Theo...	[more]

BLAST of CmoCh04G026830.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh04G026830.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700192635\|gb\|KGN47839.1\|	1.3e-16	82.81	hypothetical protein Csa_6G406020 [Cucumis sativus]	[more]
gi\|449464366\|ref\|XP_004149900.1\|	1.3e-16	82.81	PREDICTED: vacuolar amino acid transporter 1-like [Cucumis sativus]	[more]
gi\|659113316\|ref\|XP_008456512.1\|	1.9e-15	64.21	PREDICTED: vacuolar amino acid transporter 1-like [Cucumis melo]	[more]
gi\|703159270\|ref\|XP_010112207.1\|	1.5e-07	62.50	hypothetical protein L484_013031 [Morus notabilis]	[more]
gi\|590565341\|ref\|XP_007009921.1\|	5.7e-07	62.12	Transmembrane amino acid transporter family protein isoform 4 [Theobroma cacao]	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh04G026830	CmoCh04G026830	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh04G026830.1	CmoCh04G026830.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh04G026830.1.exon.1	CmoCh04G026830.1.exon.1	exon
CmoCh04G026830.1.exon.2	CmoCh04G026830.1.exon.2	exon
CmoCh04G026830.1.exon.3	CmoCh04G026830.1.exon.3	exon
CmoCh04G026830.1.exon.4	CmoCh04G026830.1.exon.4	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh04G026830.1.CDS.1	CmoCh04G026830.1.CDS.1	CDS
CmoCh04G026830.1.CDS.2	CmoCh04G026830.1.CDS.2	CDS
CmoCh04G026830.1.CDS.3	CmoCh04G026830.1.CDS.3	CDS
CmoCh04G026830.1.CDS.4	CmoCh04G026830.1.CDS.4	CDS