CmoCh04G026830 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G026830
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Transmembrane amino acid transporter family protein isoform 1
Location	Cmo_Chr04 : 19535225 .. 19536326 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGAAATTATAAAGAATATTCATGAGAAAAACAGAAATAAAGAGAGTCCACAGAAGGAAGAAGAAGCACGGATCGACAGACTTCACGATTCTCTCTCCCCAGGTTTGACATTTTTCCCTCTCTTTTTTTGCTTTTCACAAAACTTCATTATCAGATTTGATTCTTTCAATGCCGTTTCTTGTCTTGAACTTTCTGTAGGGCTCGTGATCTGTGTGAAATCGAACGTGATTTTGCTTCTGTTTTTTGTTTTTTCATTTTTAGTTACGTGAACTTCGGATTGGCGTTCGAATTTCAATTCATTTTCTATTTACCATAGCCTATAAGTATAATTTCTCGGCAGCCAAACAGTGTTCGGATACTTCAGATTTTCAGACACGATTAGAATTATAATTTTGAATTGATGTCAATTTGTAGCTTCTCGTTTTACAGTCATTTTTAGGCGGATTTCGTGGATTCTACTTGGAAAAATTGATTAAATAATGGTAATCATGATTTGATCGACGTTTTTGGCGCCTTAATTCTGATGTTTTCACTGATTATTTATTTGTTTGTTATTCCGTTTTCGGCGATTCAAGCTACTGGAAAAGGATTGGCATGTGTTTAATTATATCTGAAACTTTGTTTCTCTATCTTTTCTCTCTGCTTTGGATCTGTACTTTGTGGTGTACTTGATTGAGACTGATTAATTCTCAGTTGAAGGAACGAATTGCAACAAGGAGGAATTTGAATTTTGATAAGAAAATGAAGAACTCTGTGTCGGACCGAAGTTTTTACATCGAAAGTTCTGACGACGAAGATCTAGAAAAGGAACTCGACAATGGCGAAGACAATGGAAACGAATCGGATTCTTCCGGCTTATCGATGAATAATCAGAATCATAAACAATCAAGTTCTTACAATACCGCCGCTTGGCCTCGAAGTTACAGGTTCAGTTTCCCTCCGTTTCACCTCTTTCGTTCTTCATTCTGCAGATTTTATCCTTCCATTTCTTCTGCTTCAAATCTCCTTCGCCTAATAGTTAGATTAGAATCATTGGTGATTCACTTGAAAATTGAAATCACGAAAGTAAAATTTCCAGCGGGAATTTTGTTTTTCTAG

mRNA sequence

ATGGCTGAAATTATAAAGAATATTCATGAGAAAAACAGAAATAAAGAGAGTCCACAGAAGGAAGAAGAAGCACGGATCGACAGACTTCACGATTCTCTCTCCCCAGGGCTCGTGATCTGTGTGAAATCGAACTTACGTGAACTTCGGATTGGCTTGAAGGAACGAATTGCAACAAGGAGGAATTTGAATTTTGATAAGAAAATGAAGAACTCTGTGTCGGACCGAAGTTTTTACATCGAAAGTTCTGACGACGAAGATCTAGAAAAGGAACTCGACAATGGCGAAGACAATGGAAACGAATCGGATTCTTCCGGCTTATCGATGAATAATCAGAATCATAAACAATCAAGTTCTTACAATACCGCCGCTTGGCCTCGAAGTTACAGGTTCAGTTTCCCTCCGTTTCACCTCTTTCGTTCTTCATTCTGCAGATTTTATCCTTCCATTTCTTCTGCTTCAAATCTCCTTCGCCTAATAGTTAGATTAGAATCATTGGTGATTCACTTGAAAATTGAAATCACGAAAGTAAAATTTCCAGCGGGAATTTTGTTTTTCTAG

Coding sequence (CDS)

ATGGCTGAAATTATAAAGAATATTCATGAGAAAAACAGAAATAAAGAGAGTCCACAGAAGGAAGAAGAAGCACGGATCGACAGACTTCACGATTCTCTCTCCCCAGGGCTCGTGATCTGTGTGAAATCGAACTTACGTGAACTTCGGATTGGCTTGAAGGAACGAATTGCAACAAGGAGGAATTTGAATTTTGATAAGAAAATGAAGAACTCTGTGTCGGACCGAAGTTTTTACATCGAAAGTTCTGACGACGAAGATCTAGAAAAGGAACTCGACAATGGCGAAGACAATGGAAACGAATCGGATTCTTCCGGCTTATCGATGAATAATCAGAATCATAAACAATCAAGTTCTTACAATACCGCCGCTTGGCCTCGAAGTTACAGGTTCAGTTTCCCTCCGTTTCACCTCTTTCGTTCTTCATTCTGCAGATTTTATCCTTCCATTTCTTCTGCTTCAAATCTCCTTCGCCTAATAGTTAGATTAGAATCATTGGTGATTCACTTGAAAATTGAAATCACGAAAGTAAAATTTCCAGCGGGAATTTTGTTTTTCTAG

Homology

[Close]

BLAST of CmoCh04G026830 vs. TrEMBL
Match: A0A0A0KG55_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G406020 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 9.4e-17
Identity = 53/64 (82.81%), Postives = 58/64 (90.62%), Query Frame = 1


Query: 68  MKNSVSDRSFYIESSDDEDLEKELDNGEDNGNESDSSGLSMNNQNHKQSSSYNTAAWPRS 127
           MKNSVSDRSFYIESSDDEDLEKE+DN  ++GNESDSSGLS +NQNH Q SSYNTAAWP+S
Sbjct: 1   MKNSVSDRSFYIESSDDEDLEKEIDN--EDGNESDSSGLSADNQNHNQPSSYNTAAWPQS 60

Query: 128 YRFS 132
           YR S
Sbjct: 61  YRQS 62

[Close]

BLAST of CmoCh04G026830 vs. TrEMBL
Match: W9SI07_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_013031 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.0e-07
Identity = 40/64 (62.50%), Postives = 47/64 (73.44%), Query Frame = 1


Query: 68  MKNSVSDRSFYIESSDDEDLEKELDNGEDNGNESDSSGLSMNNQNHKQSSSYNTAAWPRS 127
           M NS SD SFYIES +++D EKE   GEDNGNESDSS  S+ NQ   + SSYNT +WP+S
Sbjct: 1   MNNSASDHSFYIESEEEDD-EKEFPKGEDNGNESDSSDYSVENQQQNKPSSYNT-SWPQS 60

Query: 128 YRFS 132
           YR S
Sbjct: 61  YRQS 62

[Close]

BLAST of CmoCh04G026830 vs. TrEMBL
Match: A0A061FNU8_THECC (Transmembrane amino acid transporter family protein isoform 4 OS=Theobroma cacao GN=TCM_043231 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 3.9e-07
Identity = 41/66 (62.12%), Postives = 48/66 (72.73%), Query Frame = 1


Query: 68  MKNSVSDRSFYIESSDDEDLEKELD--NGEDNGNESDSSGLSMNNQNHKQSSSYNTAAWP 127
           MKNSVSD+SFYIES D+ED EK  +   GED+GNESD S  S  NQ   + SSYNT +WP
Sbjct: 1   MKNSVSDQSFYIESEDEEDEEKVFNRHEGEDDGNESDVSDSSAENQQQNKPSSYNT-SWP 60

Query: 128 RSYRFS 132
           +SYR S
Sbjct: 61  QSYRQS 65

[Close]

BLAST of CmoCh04G026830 vs. TrEMBL
Match: A0A061FN63_THECC (Transmembrane amino acid transporter family protein isoform 3 OS=Theobroma cacao GN=TCM_043231 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 3.9e-07
Identity = 41/66 (62.12%), Postives = 48/66 (72.73%), Query Frame = 1


Query: 68  MKNSVSDRSFYIESSDDEDLEKELD--NGEDNGNESDSSGLSMNNQNHKQSSSYNTAAWP 127
           MKNSVSD+SFYIES D+ED EK  +   GED+GNESD S  S  NQ   + SSYNT +WP
Sbjct: 1   MKNSVSDQSFYIESEDEEDEEKVFNRHEGEDDGNESDVSDSSAENQQQNKPSSYNT-SWP 60

Query: 128 RSYRFS 132
           +SYR S
Sbjct: 61  QSYRQS 65

[Close]

BLAST of CmoCh04G026830 vs. TrEMBL
Match: A0A061FVB1_THECC (Transmembrane amino acid transporter family protein isoform 2 (Fragment) OS=Theobroma cacao GN=TCM_043231 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 3.9e-07
Identity = 41/66 (62.12%), Postives = 48/66 (72.73%), Query Frame = 1


Query: 68  MKNSVSDRSFYIESSDDEDLEKELD--NGEDNGNESDSSGLSMNNQNHKQSSSYNTAAWP 127
           MKNSVSD+SFYIES D+ED EK  +   GED+GNESD S  S  NQ   + SSYNT +WP
Sbjct: 1   MKNSVSDQSFYIESEDEEDEEKVFNRHEGEDDGNESDVSDSSAENQQQNKPSSYNT-SWP 60

Query: 128 RSYRFS 132
           +SYR S
Sbjct: 61  QSYRQS 65

[Close]

BLAST of CmoCh04G026830 vs. NCBI nr
Match: gi|700192635|gb|KGN47839.1| (hypothetical protein Csa_6G406020 [Cucumis sativus])

HSP 1 Score: 95.1 bits (235), Expect = 1.3e-16
Identity = 53/64 (82.81%), Postives = 58/64 (90.62%), Query Frame = 1


Query: 68  MKNSVSDRSFYIESSDDEDLEKELDNGEDNGNESDSSGLSMNNQNHKQSSSYNTAAWPRS 127
           MKNSVSDRSFYIESSDDEDLEKE+DN  ++GNESDSSGLS +NQNH Q SSYNTAAWP+S
Sbjct: 1   MKNSVSDRSFYIESSDDEDLEKEIDN--EDGNESDSSGLSADNQNHNQPSSYNTAAWPQS 60

Query: 128 YRFS 132
           YR S
Sbjct: 61  YRQS 62

[Close]

BLAST of CmoCh04G026830 vs. NCBI nr
Match: gi|449464366|ref|XP_004149900.1| (PREDICTED: vacuolar amino acid transporter 1-like [Cucumis sativus])

HSP 1 Score: 95.1 bits (235), Expect = 1.3e-16
Identity = 53/64 (82.81%), Postives = 58/64 (90.62%), Query Frame = 1


Query: 68  MKNSVSDRSFYIESSDDEDLEKELDNGEDNGNESDSSGLSMNNQNHKQSSSYNTAAWPRS 127
           MKNSVSDRSFYIESSDDEDLEKE+DN  ++GNESDSSGLS +NQNH Q SSYNTAAWP+S
Sbjct: 1   MKNSVSDRSFYIESSDDEDLEKEIDN--EDGNESDSSGLSADNQNHNQPSSYNTAAWPQS 60

Query: 128 YRFS 132
           YR S
Sbjct: 61  YRQS 62

[Close]

BLAST of CmoCh04G026830 vs. NCBI nr
Match: gi|659113316|ref|XP_008456512.1| (PREDICTED: vacuolar amino acid transporter 1-like [Cucumis melo])

HSP 1 Score: 91.3 bits (225), Expect = 1.9e-15
Identity = 61/95 (64.21%), Postives = 66/95 (69.47%), Query Frame = 1


Query: 68  MKNSVSDRSFYIESSDDEDLEKELDNGEDNGNESDSSGLSMNNQNHKQSSSYNTAAWPRS 127
           MKNSVSDRSFYIESSDDEDLEKE+DN  D+GNESDSSG S +NQNH Q SSY TAAWP+S
Sbjct: 1   MKNSVSDRSFYIESSDDEDLEKEIDN--DDGNESDSSGSSADNQNHNQPSSYTTAAWPQS 60

Query: 128 YRFSF--------PPFHLF-RSSFCRFYPSISSAS 154
           YR S         P   L   SS  RF  S  S+S
Sbjct: 61  YRQSIDMLGSVHSPSIGLLGTSSLARFGSSFLSSS 93

[Close]

BLAST of CmoCh04G026830 vs. NCBI nr
Match: gi|703159270|ref|XP_010112207.1| (hypothetical protein L484_013031 [Morus notabilis])

HSP 1 Score: 65.1 bits (157), Expect = 1.5e-07
Identity = 40/64 (62.50%), Postives = 47/64 (73.44%), Query Frame = 1


Query: 68  MKNSVSDRSFYIESSDDEDLEKELDNGEDNGNESDSSGLSMNNQNHKQSSSYNTAAWPRS 127
           M NS SD SFYIES +++D EKE   GEDNGNESDSS  S+ NQ   + SSYNT +WP+S
Sbjct: 1   MNNSASDHSFYIESEEEDD-EKEFPKGEDNGNESDSSDYSVENQQQNKPSSYNT-SWPQS 60

Query: 128 YRFS 132
           YR S
Sbjct: 61  YRQS 62

[Close]

BLAST of CmoCh04G026830 vs. NCBI nr
Match: gi|590565341|ref|XP_007009921.1| (Transmembrane amino acid transporter family protein isoform 4 [Theobroma cacao])

HSP 1 Score: 63.2 bits (152), Expect = 5.7e-07
Identity = 41/66 (62.12%), Postives = 48/66 (72.73%), Query Frame = 1


Query: 68  MKNSVSDRSFYIESSDDEDLEKELD--NGEDNGNESDSSGLSMNNQNHKQSSSYNTAAWP 127
           MKNSVSD+SFYIES D+ED EK  +   GED+GNESD S  S  NQ   + SSYNT +WP
Sbjct: 1   MKNSVSDQSFYIESEDEEDEEKVFNRHEGEDDGNESDVSDSSAENQQQNKPSSYNT-SWP 60

Query: 128 RSYRFS 132
           +SYR S
Sbjct: 61  QSYRQS 65

The following BLAST results are available for this feature:

BLAST of CmoCh04G026830 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh04G026830 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KG55_CUCSA	9.4e-17	82.81	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G406020 PE=4 SV=1	[more]
W9SI07_9ROSA	1.0e-07	62.50	Uncharacterized protein OS=Morus notabilis GN=L484_013031 PE=4 SV=1	[more]
A0A061FNU8_THECC	3.9e-07	62.12	Transmembrane amino acid transporter family protein isoform 4 OS=Theobroma cacao...	[more]
A0A061FN63_THECC	3.9e-07	62.12	Transmembrane amino acid transporter family protein isoform 3 OS=Theobroma cacao...	[more]
A0A061FVB1_THECC	3.9e-07	62.12	Transmembrane amino acid transporter family protein isoform 2 (Fragment) OS=Theo...	[more]

BLAST of CmoCh04G026830 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh04G026830 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700192635\|gb\|KGN47839.1\|	1.3e-16	82.81	hypothetical protein Csa_6G406020 [Cucumis sativus]	[more]
gi\|449464366\|ref\|XP_004149900.1\|	1.3e-16	82.81	PREDICTED: vacuolar amino acid transporter 1-like [Cucumis sativus]	[more]
gi\|659113316\|ref\|XP_008456512.1\|	1.9e-15	64.21	PREDICTED: vacuolar amino acid transporter 1-like [Cucumis melo]	[more]
gi\|703159270\|ref\|XP_010112207.1\|	1.5e-07	62.50	hypothetical protein L484_013031 [Morus notabilis]	[more]
gi\|590565341\|ref\|XP_007009921.1\|	5.7e-07	62.12	Transmembrane amino acid transporter family protein isoform 4 [Theobroma cacao]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G026830.1	CmoCh04G026830.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh04G026830	Cp4.1LG01g24580	Cucurbita pepo (Zucchini)	cmocpeB673
CmoCh04G026830	MELO3C019816.2	Melon (DHL92) v3.6.1	cmomedB755
CmoCh04G026830	CsaV3_6G036610	Cucumber (Chinese Long) v3	cmocucB0901
CmoCh04G026830	CsGy6G020830	Cucumber (Gy14) v2	cgybcmoB818
CmoCh04G026830	Carg04570	Silver-seed gourd	carcmoB0940
CmoCh04G026830	Carg01944	Silver-seed gourd	carcmoB1136

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh04G026830	Cucumber (Chinese Long) v3	cmocucB0856
CmoCh04G026830	Watermelon (97103) v2	cmowmbB741
CmoCh04G026830	Watermelon (97103) v2	cmowmbB762
CmoCh04G026830	Wax gourd	cmowgoB0859
CmoCh04G026830	Wax gourd	cmowgoB0894
CmoCh04G026830	Cucurbita moschata (Rifu)	cmocmoB261
CmoCh04G026830	Cucurbita moschata (Rifu)	cmocmoB345
CmoCh04G026830	Cucurbita moschata (Rifu)	cmocmoB468
CmoCh04G026830	Cucurbita moschata (Rifu)	cmocmoB476
CmoCh04G026830	Cucumber (Gy14) v1	cgycmoB0381
CmoCh04G026830	Cucumber (Gy14) v1	cgycmoB0849
CmoCh04G026830	Cucurbita maxima (Rimu)	cmacmoB308
CmoCh04G026830	Cucurbita maxima (Rimu)	cmacmoB729
CmoCh04G026830	Cucurbita maxima (Rimu)	cmacmoB740
CmoCh04G026830	Wild cucumber (PI 183967)	cmocpiB697
CmoCh04G026830	Wild cucumber (PI 183967)	cmocpiB736
CmoCh04G026830	Wild cucumber (PI 183967)	cmocpiB772
CmoCh04G026830	Cucumber (Chinese Long) v2	cmocuB685
CmoCh04G026830	Cucumber (Chinese Long) v2	cmocuB727
CmoCh04G026830	Cucumber (Chinese Long) v2	cmocuB763
CmoCh04G026830	Melon (DHL92) v3.5.1	cmomeB652
CmoCh04G026830	Melon (DHL92) v3.5.1	cmomeB667
CmoCh04G026830	Watermelon (Charleston Gray)	cmowcgB665
CmoCh04G026830	Watermelon (Charleston Gray)	cmowcgB682
CmoCh04G026830	Watermelon (97103) v1	cmowmB663
CmoCh04G026830	Watermelon (97103) v1	cmowmB704
CmoCh04G026830	Cucurbita pepo (Zucchini)	cmocpeB657
CmoCh04G026830	Cucurbita pepo (Zucchini)	cmocpeB689
CmoCh04G026830	Cucurbita pepo (Zucchini)	cmocpeB693
CmoCh04G026830	Bottle gourd (USVL1VR-Ls)	cmolsiB676
CmoCh04G026830	Bottle gourd (USVL1VR-Ls)	cmolsiB697
CmoCh04G026830	Cucumber (Gy14) v2	cgybcmoB233
CmoCh04G026830	Cucumber (Gy14) v2	cgybcmoB635
CmoCh04G026830	Melon (DHL92) v3.6.1	cmomedB742
CmoCh04G026830	Silver-seed gourd	carcmoB0370