CmoCh04G026060.1 (mRNA) Cucurbita moschata (Rifu)

Overview
NameCmoCh04G026060.1
TypemRNA
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionCCamK
LocationCmo_Chr04 : 19002799 .. 19005557 (+)
Sequence length1839
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGTGCATTCAATGTTGGAGGGAGGCCAAAAAGTTTTGAGGTTTAATGATGATTTGAATGGAACTGGCGTCCTGTGAGTCTTATGACAAATCCTTAAATAGTCTTCTATCCTTATGATATAGTAAGGTCTGATTTCGTGCTCTATGCTGCATAGTGATGACTCTTAGTTTTGGGAAGACACCCTTTCCTGATTCTTCATTCTTCACTCTTGTATGTTTGGTGTGAAAATTAGTTTATCCGAAGAATTCAAGAAAGAGGAGTCTTTGTGTGTGAGATCTCACATCGATTGAAGAGGGGAACGAAACATTCTTTATAAGGGTGTGCAAACCTCTCCCTAGTAAAAGCGTTTTAAAAACTTTGAGGGAAAGCTCGAAAGGAAAAGTTCAAAGAGGACAATATCTGATAAGAGTGAGCTTGAGCTGTTACATTGTGGGAGAGTAGGAGAGGCATCAGAAAAAGGGATTTTGCAACTTTTAGCCTCGAGATGGAGTTGTAGCCCTTTCTCTAGTCACTGATGCAACTGTCTAAAATAATTCTAAAGGATCATGAATTTGCCTCTCTGGAACTTAGATTTCTTTTAAAGGTGGTTCTAAGTAGCATTCGAAGGATTAAATTCTCTATGAATGTTGTGTATGTGGGTGTTGTGTATTTTTGTAATTGAATACGCACCTGAAAACATAGGCGAAGAGCATCATCGCCTTGTGAGTTACGAAGGCTCGAAAATCCACAAAGTAACTCGCGCATGTCAATTGTTCCATCCCGGTTATTGTCAAAGAGGTCGAAAATTCGAGGTGCAAGAGGGATAAGTGAAGACATATTCATTGCTTTCAGCACCTCTTCAAATTCAGGAAGAGTAGCATTGTCCCCTTTTGCACATCTGCTTATTGCAAGGTATGCAAATTAATCATTTCTCATTAATTTTGTCTACTAAGGTTACTAGATTAGTATGCCATTAGATGATTGTAAGCCATTGCATTTATAGCAAACTTACTTTGTCTTGAAATGGAGTCTGAAACTTTCAACTTCCTCAGGTGTGAGATCATAAGACCCCAACAAAGATCTTAGCTTTTTTGTCCTCAATAAAATCGTGCTGCTCCATACGCTAGCTATCGCTGCAGCTCGAAGCTTGCGTCGGGCATTGAAACTCTTAAGTCGTGATACAATCTCAGCATCCATTTGATCTTGCTTGGCTGAATTACCCATGACCCATGGATGCTCTAGAAGCTGTGTCATGAAATTTGTTAGGCTCACAAGCAATCCAGCAAATTACACTAAGGCCAAGCCCCCTCGTACCTCTTGGGCACTCGGTCTCCTCTGAGGATCAACTGTCAACAGACTCGAAATCAGTTGCCTAGCCGAAGAAGAAATCGTCTTCCAAGTTTTCTCATGGAAACTGAACTCTCCCTGCATTCAACCAAAGATTCACAAAAGGAGCACATTTTCTTGCAAACAATCTAACATACAAGTTTATAGATTTGACAACATAATTGAAGATCACTTACAGCCATGATCAGTTCATGTTTTTCTCGATTGGACCGAGCGATAAAAGGCGGGTACCTATGTAAAGAAATTTATTTGAGTTCACTTCATTTTGCATAGGAGCTGCAGAATAATGAACTTTGACCTTTTTTTTCTTGCAGAAAGGAGATTCCATTACATACCCTGAGAGAAGGATGTACAAAATCACTCCCAGAGACCACATATCACTTTTGGAGGTTATTGTTCCTTGGGAAAGTGCTTCTGGTGAGACATAATCTATGGAACCAAACAATCCAACAACTGGGTCAGTGAAATCCTCCACAGAACTCAATCCAAAGTCCATGATTTTCAAGGAAGAGTCCTGGCTTTCGTCGAGGAAGAGACAGTTTTCGGGTTTCAAGTCACGGTGAATGATATTGACTTCATGAAGAGCCTTCAAACCACTAGCAATCTGTCTCACAACTGCAGCAGCTTTAGCTTCAGTGTGTCTCGTCTGAGCCACGATCCTATCGAAAAGCTCGCCTCCAGAACAAAGCTCCAACACGAGGTGAACCCCGTTCGAATCTTCATACACGTCGTAAAGATCAATCACATTTTCATGAGGTGAGACATTCTCAACTATCTTTCTCATTACCAAAATCTCATTTGTCAATAGAGCATCAGAAATCATAGACTTTCTTGTAGGAACCATGGAAGTCACACTCTTGAGAGCATTTCGATTTGGTGGACATCCCATGAAAGCTGATGGTCCAATTCTTCTTAGTGTTTTAATAGCTACTTCCTTTTTCTCTCTTCTGGACTTACTGATACCTTTCCTGACTACTGAGAATCCTCCTCTCCCTATAACGTCCGATATCTCATACTCGTCGGAGAGTTTTCGAGCTTGCTGTATCATTTTCGCTCGAAAATTTGATGAAGAAACCACCCAGGAGGGTGAAGAGAAGGAATCTGGGAATATTTGGTGGAAGAAAATTGATAAGGAAGAGGACAAGAGGTAGTTGAATGATGAGAGAAAAGGAAGAGGATTGGAATGAGGGACTTACATCATGAGAGTTGTGGATTAGTTATTAAAATTTGGATTGAAAAATGAGGCATTTTAGGGAATAAAGAAAGGAGAATAGGAGTTGGGGAAGAAAGACAAAACAAAGTCAATGTTTAACACTTCCCTCTGTTCGTAATTTATTCATTATTAGATGCGAAGATTTGAAGATCGAAGTTGAGATTGTTTCATATGAACTTATTTCGAAAGAGATGTGAATTGAGATTTAATTCTCGG

mRNA sequence

ATGGCTGTGCATTCAATGTTGGAGGGAGGCCAAAAAGTTTTGAGGTTTAATGATGATTTGAATGGAACTGGCGTCCTGCGAAGAGCATCATCGCCTTGTGAGTTACGAAGGCTCGAAAATCCACAAAGTAACTCGCGCATGTCAATTGTTCCATCCCGGTTATTGTCAAAGAGGTCGAAAATTCGAGGTGCAAGAGGGATAAGTGAAGACATATTCATTGCTTTCAGCACCTCTTCAAATTCAGGAAGAGTAGCATTGTCCCCTTTTGCACATCTGCTTATTGCAAGGTGTGAGATCATAAGACCCCAACAAAGATCTTAGCTTTTTTGTCCTCAATAAAATCGTGCTGCTCCATACGCTAGCTATCGCTGCAGCTCGAAGCTTGCGTCGGGCATTGAAACTCTTAAGTCGTGATACAATCTCAGCATCCATTTGATCTTGCTTGGCTGAATTACCCATGACCCATGGATGCTCTAGAAGCTGTGTCATGAAATTTGTTAGGCTCACAAGCAATCCAGCAAATTACACTAAGGCCAAGCCCCCTCGTACCTCTTGGGCACTCGGTCTCCTCTGAGGATCAACTGTCAACAGACTCGAAATCAGTTGCCTAGCCGAAGAAGAAATCGTCTTCCAAGTTTTCTCATGGAAACTGAACTCTCCCTGCATTCAACCAAAGATTCACAAAAGGAGCACATTTTCTTGCAAACAATCTAACATACAAGTTTATAGATTTGACAACATAATTGAAGATCACTTACAGCCATGATCAGTTCATGTTTTTCTCGATTGGACCGAGCGATAAAAGAAAGGAGATTCCATTACATACCCTGAGAGAAGGATGTACAAAATCACTCCCAGAGACCACATATCACTTTTGGAGGTTATTGTTCCTTGGGAAAGTGCTTCTGGTGAGACATAATCTATGGAACCAAACAATCCAACAACTGGGTCAGTGAAATCCTCCACAGAACTCAATCCAAAGTCCATGATTTTCAAGGAAGAGTCCTGGCTTTCGTCGAGGAAGAGACAGTTTTCGGGTTTCAAGTCACGGTGAATGATATTGACTTCATGAAGAGCCTTCAAACCACTAGCAATCTGTCTCACAACTGCAGCAGCTTTAGCTTCAGTGTGTCTCGTCTGAGCCACGATCCTATCGAAAAGCTCGCCTCCAGAACAAAGCTCCAACACGAGGTGAACCCCGTTCGAATCTTCATACACGTCGTAAAGATCAATCACATTTTCATGAGGAACCATGGAAGTCACACTCTTGAGAGCATTTCGATTTGGTGGACATCCCATGAAAGCTGATGGTCCAATTCTTCTTAGTGTTTTAATAGCTACTTCCTTTTTCTCTCTTCTGGACTTACTGATACCTTTCCTGACTACTGAGAATCCTCCTCTCCCTATAACGTCCGATATCTCATACTCGTCGGAGAGTTTTCGAGCTTGCTGTATCATTTTCGCTCGAAAATTTGATGAAGAAACCACCCAGGAGGGTGAAGAGAAGGAATCTGGGAATATTTGGTGGAAGAAAATTGATAAGGAAGAGGACAAGAGGTAGTTGAATGATGAGAGAAAAGGAAGAGGATTGGAATGAGGGACTTACATCATGAGAGTTGTGGATTAGTTATTAAAATTTGGATTGAAAAATGAGGCATTTTAGGGAATAAAGAAAGGAGAATAGGAGTTGGGGAAGAAAGACAAAACAAAGTCAATGTTTAACACTTCCCTCTGTTCGTAATTTATTCATTATTAGATGCGAAGATTTGAAGATCGAAGTTGAGATTGTTTCATATGAACTTATTTCGAAAGAGATGTGAATTGAGATTTAATTCTCGG

Coding sequence (CDS)

ATGGCTGTGCATTCAATGTTGGAGGGAGGCCAAAAAGTTTTGAGGTTTAATGATGATTTGAATGGAACTGGCGTCCTGCGAAGAGCATCATCGCCTTGTGAGTTACGAAGGCTCGAAAATCCACAAAGTAACTCGCGCATGTCAATTGTTCCATCCCGGTTATTGTCAAAGAGGTCGAAAATTCGAGGTGCAAGAGGGATAAGTGAAGACATATTCATTGCTTTCAGCACCTCTTCAAATTCAGGAAGAGTAGCATTGTCCCCTTTTGCACATCTGCTTATTGCAAGGTGTGAGATCATAAGACCCCAACAAAGATCTTAG
Homology
[Close]
BLAST of CmoCh04G026060.1 vs. TrEMBL
Match: A0A0A9BTC5_ARUDO (CCamK OS=Arundo donax PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 2.8e-13
Identity = 46/66 (69.70%), Postives = 49/66 (74.24%), Query Frame = 1 

Query: 27 RRASSPCELRRLENPQSNSRMSIVPSRLLSKRSKIRGARGISEDIFIAFSTSSNSGRVAL 86
          RRASSP E  RLE+P   S MS VPSRLLS +S  RGARGISE IFIAFSTSSNS  VA 
Sbjct: 15 RRASSPREFLRLESPHRISLMSTVPSRLLSNKSNTRGARGISESIFIAFSTSSNSDSVAF 74

Query: 87 SPFAHL 93
          SP  H+
Sbjct: 75 SPSPHI 80

[Close]
BLAST of CmoCh04G026060.1 vs. NCBI nr
Match: gi|778710550|ref|XP_011656593.1| (PREDICTED: uncharacterized protein LOC101215032 isoform X1 [Cucumis sativus])

HSP 1 Score: 115.5 bits (288), Expect = 5.5e-23
Identity = 63/70 (90.00%), Postives = 64/70 (91.43%), Query Frame = 1 

Query: 27  RRASSPCELRRLENPQSNSRMSIVPSRLLSKRSKIRGARGISEDIFIAFSTSSNSGRVAL 86
           RRASSP E  RLENPQS SRMSIVPSRLLSKRSK+RGARGISEDIFIAFSTSSNSGRVAL
Sbjct: 735 RRASSPREFLRLENPQSISRMSIVPSRLLSKRSKMRGARGISEDIFIAFSTSSNSGRVAL 794

Query: 87  SPFAHLLIAR 97
           SPFAHL I R
Sbjct: 795 SPFAHLHITR 804

[Close]
BLAST of CmoCh04G026060.1 vs. NCBI nr
Match: gi|659113597|ref|XP_008456658.1| (PREDICTED: uncharacterized protein LOC103496546 isoform X1 [Cucumis melo])

HSP 1 Score: 115.5 bits (288), Expect = 5.5e-23
Identity = 63/70 (90.00%), Postives = 64/70 (91.43%), Query Frame = 1 

Query: 27  RRASSPCELRRLENPQSNSRMSIVPSRLLSKRSKIRGARGISEDIFIAFSTSSNSGRVAL 86
           RRASSP E  RLENPQS SRMSIVPSRLLSKRSK+RGARGISEDIFIAFSTSSNSGRVAL
Sbjct: 735 RRASSPREFLRLENPQSISRMSIVPSRLLSKRSKMRGARGISEDIFIAFSTSSNSGRVAL 794

Query: 87  SPFAHLLIAR 97
           SPFAHL I R
Sbjct: 795 SPFAHLHITR 804

The following BLAST results are available for this feature:
BLAST of CmoCh04G026060.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh04G026060.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A9BTC5_ARUDO2.8e-1369.70CCamK OS=Arundo donax PE=4 SV=1[more]
BLAST of CmoCh04G026060.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh04G026060.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778710550|ref|XP_011656593.1|5.5e-2390.00PREDICTED: uncharacterized protein LOC101215032 isoform X1 [Cucumis sativus][more]
gi|659113597|ref|XP_008456658.1|5.5e-2390.00PREDICTED: uncharacterized protein LOC103496546 isoform X1 [Cucumis melo][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmoCh04G026060CmoCh04G026060gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmoCh04G026060.1CmoCh04G026060.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh04G026060.1.exon.1CmoCh04G026060.1.exon.1exon
CmoCh04G026060.1.exon.2CmoCh04G026060.1.exon.2exon
CmoCh04G026060.1.exon.3CmoCh04G026060.1.exon.3exon
CmoCh04G026060.1.exon.4CmoCh04G026060.1.exon.4exon
CmoCh04G026060.1.exon.5CmoCh04G026060.1.exon.5exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh04G026060.1.CDS.1CmoCh04G026060.1.CDS.1CDS
CmoCh04G026060.1.CDS.2CmoCh04G026060.1.CDS.2CDS
CmoCh04G026060.1.CDS.3CmoCh04G026060.1.CDS.3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh04G026060.1.three_prime_UTR.1CmoCh04G026060.1.three_prime_UTR.1three_prime_UTR
CmoCh04G026060.1.three_prime_UTR.2CmoCh04G026060.1.three_prime_UTR.2three_prime_UTR
CmoCh04G026060.1.three_prime_UTR.3CmoCh04G026060.1.three_prime_UTR.3three_prime_UTR