CmoCh04G026060 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh04G026060
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionCCamK
LocationCmo_Chr04 : 19002799 .. 19005557 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGTGCATTCAATGTTGGAGGGAGGCCAAAAAGTTTTGAGGTTTAATGATGATTTGAATGGAACTGGCGTCCTGTGAGTCTTATGACAAATCCTTAAATAGTCTTCTATCCTTATGATATAGTAAGGTCTGATTTCGTGCTCTATGCTGCATAGTGATGACTCTTAGTTTTGGGAAGACACCCTTTCCTGATTCTTCATTCTTCACTCTTGTATGTTTGGTGTGAAAATTAGTTTATCCGAAGAATTCAAGAAAGAGGAGTCTTTGTGTGTGAGATCTCACATCGATTGAAGAGGGGAACGAAACATTCTTTATAAGGGTGTGCAAACCTCTCCCTAGTAAAAGCGTTTTAAAAACTTTGAGGGAAAGCTCGAAAGGAAAAGTTCAAAGAGGACAATATCTGATAAGAGTGAGCTTGAGCTGTTACATTGTGGGAGAGTAGGAGAGGCATCAGAAAAAGGGATTTTGCAACTTTTAGCCTCGAGATGGAGTTGTAGCCCTTTCTCTAGTCACTGATGCAACTGTCTAAAATAATTCTAAAGGATCATGAATTTGCCTCTCTGGAACTTAGATTTCTTTTAAAGGTGGTTCTAAGTAGCATTCGAAGGATTAAATTCTCTATGAATGTTGTGTATGTGGGTGTTGTGTATTTTTGTAATTGAATACGCACCTGAAAACATAGGCGAAGAGCATCATCGCCTTGTGAGTTACGAAGGCTCGAAAATCCACAAAGTAACTCGCGCATGTCAATTGTTCCATCCCGGTTATTGTCAAAGAGGTCGAAAATTCGAGGTGCAAGAGGGATAAGTGAAGACATATTCATTGCTTTCAGCACCTCTTCAAATTCAGGAAGAGTAGCATTGTCCCCTTTTGCACATCTGCTTATTGCAAGGTATGCAAATTAATCATTTCTCATTAATTTTGTCTACTAAGGTTACTAGATTAGTATGCCATTAGATGATTGTAAGCCATTGCATTTATAGCAAACTTACTTTGTCTTGAAATGGAGTCTGAAACTTTCAACTTCCTCAGGTGTGAGATCATAAGACCCCAACAAAGATCTTAGCTTTTTTGTCCTCAATAAAATCGTGCTGCTCCATACGCTAGCTATCGCTGCAGCTCGAAGCTTGCGTCGGGCATTGAAACTCTTAAGTCGTGATACAATCTCAGCATCCATTTGATCTTGCTTGGCTGAATTACCCATGACCCATGGATGCTCTAGAAGCTGTGTCATGAAATTTGTTAGGCTCACAAGCAATCCAGCAAATTACACTAAGGCCAAGCCCCCTCGTACCTCTTGGGCACTCGGTCTCCTCTGAGGATCAACTGTCAACAGACTCGAAATCAGTTGCCTAGCCGAAGAAGAAATCGTCTTCCAAGTTTTCTCATGGAAACTGAACTCTCCCTGCATTCAACCAAAGATTCACAAAAGGAGCACATTTTCTTGCAAACAATCTAACATACAAGTTTATAGATTTGACAACATAATTGAAGATCACTTACAGCCATGATCAGTTCATGTTTTTCTCGATTGGACCGAGCGATAAAAGGCGGGTACCTATGTAAAGAAATTTATTTGAGTTCACTTCATTTTGCATAGGAGCTGCAGAATAATGAACTTTGACCTTTTTTTTCTTGCAGAAAGGAGATTCCATTACATACCCTGAGAGAAGGATGTACAAAATCACTCCCAGAGACCACATATCACTTTTGGAGGTTATTGTTCCTTGGGAAAGTGCTTCTGGTGAGACATAATCTATGGAACCAAACAATCCAACAACTGGGTCAGTGAAATCCTCCACAGAACTCAATCCAAAGTCCATGATTTTCAAGGAAGAGTCCTGGCTTTCGTCGAGGAAGAGACAGTTTTCGGGTTTCAAGTCACGGTGAATGATATTGACTTCATGAAGAGCCTTCAAACCACTAGCAATCTGTCTCACAACTGCAGCAGCTTTAGCTTCAGTGTGTCTCGTCTGAGCCACGATCCTATCGAAAAGCTCGCCTCCAGAACAAAGCTCCAACACGAGGTGAACCCCGTTCGAATCTTCATACACGTCGTAAAGATCAATCACATTTTCATGAGGTGAGACATTCTCAACTATCTTTCTCATTACCAAAATCTCATTTGTCAATAGAGCATCAGAAATCATAGACTTTCTTGTAGGAACCATGGAAGTCACACTCTTGAGAGCATTTCGATTTGGTGGACATCCCATGAAAGCTGATGGTCCAATTCTTCTTAGTGTTTTAATAGCTACTTCCTTTTTCTCTCTTCTGGACTTACTGATACCTTTCCTGACTACTGAGAATCCTCCTCTCCCTATAACGTCCGATATCTCATACTCGTCGGAGAGTTTTCGAGCTTGCTGTATCATTTTCGCTCGAAAATTTGATGAAGAAACCACCCAGGAGGGTGAAGAGAAGGAATCTGGGAATATTTGGTGGAAGAAAATTGATAAGGAAGAGGACAAGAGGTAGTTGAATGATGAGAGAAAAGGAAGAGGATTGGAATGAGGGACTTACATCATGAGAGTTGTGGATTAGTTATTAAAATTTGGATTGAAAAATGAGGCATTTTAGGGAATAAAGAAAGGAGAATAGGAGTTGGGGAAGAAAGACAAAACAAAGTCAATGTTTAACACTTCCCTCTGTTCGTAATTTATTCATTATTAGATGCGAAGATTTGAAGATCGAAGTTGAGATTGTTTCATATGAACTTATTTCGAAAGAGATGTGAATTGAGATTTAATTCTCGG

mRNA sequence

ATGGCTGTGCATTCAATGTTGGAGGGAGGCCAAAAAGTTTTGAGGTTTAATGATGATTTGAATGGAACTGGCGTCCTGCGAAGAGCATCATCGCCTTGTGAGTTACGAAGGCTCGAAAATCCACAAAGTAACTCGCGCATGTCAATTGTTCCATCCCGGTTATTGTCAAAGAGGTCGAAAATTCGAGGTGCAAGAGGGATAAGTGAAGACATATTCATTGCTTTCAGCACCTCTTCAAATTCAGGAAGAGTAGCATTGTCCCCTTTTGCACATCTGCTTATTGCAAGGTGTGAGATCATAAGACCCCAACAAAGATCTTAGCTTTTTTGTCCTCAATAAAATCGTGCTGCTCCATACGCTAGCTATCGCTGCAGCTCGAAGCTTGCGTCGGGCATTGAAACTCTTAAGTCGTGATACAATCTCAGCATCCATTTGATCTTGCTTGGCTGAATTACCCATGACCCATGGATGCTCTAGAAGCTGTGTCATGAAATTTGTTAGGCTCACAAGCAATCCAGCAAATTACACTAAGGCCAAGCCCCCTCGTACCTCTTGGGCACTCGGTCTCCTCTGAGGATCAACTGTCAACAGACTCGAAATCAGTTGCCTAGCCGAAGAAGAAATCGTCTTCCAAGTTTTCTCATGGAAACTGAACTCTCCCTGCATTCAACCAAAGATTCACAAAAGGAGCACATTTTCTTGCAAACAATCTAACATACAAGTTTATAGATTTGACAACATAATTGAAGATCACTTACAGCCATGATCAGTTCATGTTTTTCTCGATTGGACCGAGCGATAAAAGAAAGGAGATTCCATTACATACCCTGAGAGAAGGATGTACAAAATCACTCCCAGAGACCACATATCACTTTTGGAGGTTATTGTTCCTTGGGAAAGTGCTTCTGGTGAGACATAATCTATGGAACCAAACAATCCAACAACTGGGTCAGTGAAATCCTCCACAGAACTCAATCCAAAGTCCATGATTTTCAAGGAAGAGTCCTGGCTTTCGTCGAGGAAGAGACAGTTTTCGGGTTTCAAGTCACGGTGAATGATATTGACTTCATGAAGAGCCTTCAAACCACTAGCAATCTGTCTCACAACTGCAGCAGCTTTAGCTTCAGTGTGTCTCGTCTGAGCCACGATCCTATCGAAAAGCTCGCCTCCAGAACAAAGCTCCAACACGAGGTGAACCCCGTTCGAATCTTCATACACGTCGTAAAGATCAATCACATTTTCATGAGGAACCATGGAAGTCACACTCTTGAGAGCATTTCGATTTGGTGGACATCCCATGAAAGCTGATGGTCCAATTCTTCTTAGTGTTTTAATAGCTACTTCCTTTTTCTCTCTTCTGGACTTACTGATACCTTTCCTGACTACTGAGAATCCTCCTCTCCCTATAACGTCCGATATCTCATACTCGTCGGAGAGTTTTCGAGCTTGCTGTATCATTTTCGCTCGAAAATTTGATGAAGAAACCACCCAGGAGGGTGAAGAGAAGGAATCTGGGAATATTTGGTGGAAGAAAATTGATAAGGAAGAGGACAAGAGGTAGTTGAATGATGAGAGAAAAGGAAGAGGATTGGAATGAGGGACTTACATCATGAGAGTTGTGGATTAGTTATTAAAATTTGGATTGAAAAATGAGGCATTTTAGGGAATAAAGAAAGGAGAATAGGAGTTGGGGAAGAAAGACAAAACAAAGTCAATGTTTAACACTTCCCTCTGTTCGTAATTTATTCATTATTAGATGCGAAGATTTGAAGATCGAAGTTGAGATTGTTTCATATGAACTTATTTCGAAAGAGATGTGAATTGAGATTTAATTCTCGG

Coding sequence (CDS)

ATGGCTGTGCATTCAATGTTGGAGGGAGGCCAAAAAGTTTTGAGGTTTAATGATGATTTGAATGGAACTGGCGTCCTGCGAAGAGCATCATCGCCTTGTGAGTTACGAAGGCTCGAAAATCCACAAAGTAACTCGCGCATGTCAATTGTTCCATCCCGGTTATTGTCAAAGAGGTCGAAAATTCGAGGTGCAAGAGGGATAAGTGAAGACATATTCATTGCTTTCAGCACCTCTTCAAATTCAGGAAGAGTAGCATTGTCCCCTTTTGCACATCTGCTTATTGCAAGGTGTGAGATCATAAGACCCCAACAAAGATCTTAG
Homology
[Close]
BLAST of CmoCh04G026060 vs. TrEMBL
Match: A0A0A9BTC5_ARUDO (CCamK OS=Arundo donax PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 2.8e-13
Identity = 46/66 (69.70%), Postives = 49/66 (74.24%), Query Frame = 1 

Query: 27 RRASSPCELRRLENPQSNSRMSIVPSRLLSKRSKIRGARGISEDIFIAFSTSSNSGRVAL 86
          RRASSP E  RLE+P   S MS VPSRLLS +S  RGARGISE IFIAFSTSSNS  VA 
Sbjct: 15 RRASSPREFLRLESPHRISLMSTVPSRLLSNKSNTRGARGISESIFIAFSTSSNSDSVAF 74

Query: 87 SPFAHL 93
          SP  H+
Sbjct: 75 SPSPHI 80

[Close]
BLAST of CmoCh04G026060 vs. NCBI nr
Match: gi|778710550|ref|XP_011656593.1| (PREDICTED: uncharacterized protein LOC101215032 isoform X1 [Cucumis sativus])

HSP 1 Score: 115.5 bits (288), Expect = 5.5e-23
Identity = 63/70 (90.00%), Postives = 64/70 (91.43%), Query Frame = 1 

Query: 27  RRASSPCELRRLENPQSNSRMSIVPSRLLSKRSKIRGARGISEDIFIAFSTSSNSGRVAL 86
           RRASSP E  RLENPQS SRMSIVPSRLLSKRSK+RGARGISEDIFIAFSTSSNSGRVAL
Sbjct: 735 RRASSPREFLRLENPQSISRMSIVPSRLLSKRSKMRGARGISEDIFIAFSTSSNSGRVAL 794

Query: 87  SPFAHLLIAR 97
           SPFAHL I R
Sbjct: 795 SPFAHLHITR 804

[Close]
BLAST of CmoCh04G026060 vs. NCBI nr
Match: gi|659113597|ref|XP_008456658.1| (PREDICTED: uncharacterized protein LOC103496546 isoform X1 [Cucumis melo])

HSP 1 Score: 115.5 bits (288), Expect = 5.5e-23
Identity = 63/70 (90.00%), Postives = 64/70 (91.43%), Query Frame = 1 

Query: 27  RRASSPCELRRLENPQSNSRMSIVPSRLLSKRSKIRGARGISEDIFIAFSTSSNSGRVAL 86
           RRASSP E  RLENPQS SRMSIVPSRLLSKRSK+RGARGISEDIFIAFSTSSNSGRVAL
Sbjct: 735 RRASSPREFLRLENPQSISRMSIVPSRLLSKRSKMRGARGISEDIFIAFSTSSNSGRVAL 794

Query: 87  SPFAHLLIAR 97
           SPFAHL I R
Sbjct: 795 SPFAHLHITR 804

The following BLAST results are available for this feature:
BLAST of CmoCh04G026060 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh04G026060 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A9BTC5_ARUDO2.8e-1369.70CCamK OS=Arundo donax PE=4 SV=1[more]
BLAST of CmoCh04G026060 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh04G026060 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778710550|ref|XP_011656593.1|5.5e-2390.00PREDICTED: uncharacterized protein LOC101215032 isoform X1 [Cucumis sativus][more]
gi|659113597|ref|XP_008456658.1|5.5e-2390.00PREDICTED: uncharacterized protein LOC103496546 isoform X1 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G026060.1CmoCh04G026060.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh04G026060Cucumber (Gy14) v2cgybcmoB635
CmoCh04G026060Cucumber (Gy14) v2cgybcmoB815
CmoCh04G026060Melon (DHL92) v3.6.1cmomedB754
CmoCh04G026060Silver-seed gourdcarcmoB0094
CmoCh04G026060Silver-seed gourdcarcmoB1121
CmoCh04G026060Silver-seed gourdcarcmoB1136
CmoCh04G026060Cucumber (Chinese Long) v3cmocucB0898
CmoCh04G026060Watermelon (97103) v2cmowmbB741
CmoCh04G026060Watermelon (97103) v2cmowmbB762
CmoCh04G026060Wax gourdcmowgoB0858
CmoCh04G026060Wax gourdcmowgoB0894
CmoCh04G026060Cucurbita moschata (Rifu)cmocmoB262
CmoCh04G026060Cucurbita moschata (Rifu)cmocmoB345
CmoCh04G026060Cucurbita moschata (Rifu)cmocmoB468
CmoCh04G026060Cucumber (Gy14) v1cgycmoB1004
CmoCh04G026060Cucurbita maxima (Rimu)cmacmoB309
CmoCh04G026060Cucurbita maxima (Rimu)cmacmoB729
CmoCh04G026060Wild cucumber (PI 183967)cmocpiB769
CmoCh04G026060Cucumber (Chinese Long) v2cmocuB760
CmoCh04G026060Melon (DHL92) v3.5.1cmomeB667
CmoCh04G026060Watermelon (Charleston Gray)cmowcgB682
CmoCh04G026060Watermelon (97103) v1cmowmB663
CmoCh04G026060Cucurbita pepo (Zucchini)cmocpeB657
CmoCh04G026060Cucurbita pepo (Zucchini)cmocpeB673
CmoCh04G026060Bottle gourd (USVL1VR-Ls)cmolsiB676
CmoCh04G026060Bottle gourd (USVL1VR-Ls)cmolsiB697