CmoCh04G021800.1 (mRNA) Cucurbita moschata (Rifu)

Overview
NameCmoCh04G021800.1
TypemRNA
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr04 : 15984050 .. 15984781 (-)
Sequence length732
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTAGCATCCAAATTCAATTTCTTAGGCGAGGCTCAACTTCCTCCATTGGTGCAAAAGCAACACAATCATGAGGCAAACAAATCTACACAGCACAATCATGAGGTAAACAAATCTACACAGCACAATTATGAGGCAAACAAATCTATAAAGGGAGGTTCAACCTCTCTTTCAGGAGGGAAAAGATTCCGACTGATTGCTCCTAAGCCTGTGCCTAATCCTAGATTGCTTGATAGCGCCAACTTTGTAAATCATGGTCTCAAAATGGTTGACCACAACTTTCAGCATGTTGGTTCAAACTACAATTCAGTTCCATCTAGCATCAATAAGACGACTCCAAAGGTAACTTCTTCTCGTGTATTTGATGAAATTCAGTTCTTAGATATACATCAAGCTGATGTAGCTCAGCAGCTAGAAGCAATGACATTTAGTGGCACATCAGAAGGGATTCAGTTAATGTCAAAGAGCATCGCTTTACTTGATTCAACAAACTTGGACAATATTGCTGCAAATTTTGGAAATGAAGGAAGCCAACAACAATTAGCAGAATATGATTATCTCTTAAATGTTTTAGAAGACAATCCACACGACTTTGGCAGCGACTTTAATTTGAGTGATATAGATAAATACAACGAGTGGCTAAGGAACACTGTTCTCGAAAACAAGAGTGGTCCAGATAGCTTTACAATAACAATGCATAAAACTTTCGAATTGAAATCAATCAATAAATAG

mRNA sequence

ATGGTAGCATCCAAATTCAATTTCTTAGGCGAGGCTCAACTTCCTCCATTGGTGCAAAAGCAACACAATCATGAGGCAAACAAATCTACACAGCACAATCATGAGGTAAACAAATCTACACAGCACAATTATGAGGCAAACAAATCTATAAAGGGAGGTTCAACCTCTCTTTCAGGAGGGAAAAGATTCCGACTGATTGCTCCTAAGCCTGTGCCTAATCCTAGATTGCTTGATAGCGCCAACTTTGTAAATCATGGTCTCAAAATGGTTGACCACAACTTTCAGCATGTTGGTTCAAACTACAATTCAGTTCCATCTAGCATCAATAAGACGACTCCAAAGGTAACTTCTTCTCGTGTATTTGATGAAATTCAGTTCTTAGATATACATCAAGCTGATGTAGCTCAGCAGCTAGAAGCAATGACATTTAGTGGCACATCAGAAGGGATTCAGTTAATGTCAAAGAGCATCGCTTTACTTGATTCAACAAACTTGGACAATATTGCTGCAAATTTTGGAAATGAAGGAAGCCAACAACAATTAGCAGAATATGATTATCTCTTAAATGTTTTAGAAGACAATCCACACGACTTTGGCAGCGACTTTAATTTGAGTGATATAGATAAATACAACGAGTGGCTAAGGAACACTGTTCTCGAAAACAAGAGTGGTCCAGATAGCTTTACAATAACAATGCATAAAACTTTCGAATTGAAATCAATCAATAAATAG

Coding sequence (CDS)

ATGGTAGCATCCAAATTCAATTTCTTAGGCGAGGCTCAACTTCCTCCATTGGTGCAAAAGCAACACAATCATGAGGCAAACAAATCTACACAGCACAATCATGAGGTAAACAAATCTACACAGCACAATTATGAGGCAAACAAATCTATAAAGGGAGGTTCAACCTCTCTTTCAGGAGGGAAAAGATTCCGACTGATTGCTCCTAAGCCTGTGCCTAATCCTAGATTGCTTGATAGCGCCAACTTTGTAAATCATGGTCTCAAAATGGTTGACCACAACTTTCAGCATGTTGGTTCAAACTACAATTCAGTTCCATCTAGCATCAATAAGACGACTCCAAAGGTAACTTCTTCTCGTGTATTTGATGAAATTCAGTTCTTAGATATACATCAAGCTGATGTAGCTCAGCAGCTAGAAGCAATGACATTTAGTGGCACATCAGAAGGGATTCAGTTAATGTCAAAGAGCATCGCTTTACTTGATTCAACAAACTTGGACAATATTGCTGCAAATTTTGGAAATGAAGGAAGCCAACAACAATTAGCAGAATATGATTATCTCTTAAATGTTTTAGAAGACAATCCACACGACTTTGGCAGCGACTTTAATTTGAGTGATATAGATAAATACAACGAGTGGCTAAGGAACACTGTTCTCGAAAACAAGAGTGGTCCAGATAGCTTTACAATAACAATGCATAAAACTTTCGAATTGAAATCAATCAATAAATAG
Homology
[Close]
BLAST of CmoCh04G021800.1 vs. TrEMBL
Match: A0A0A0KPK0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G576720 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 3.0e-23
Identity = 66/130 (50.77%), Postives = 84/130 (64.62%), Query Frame = 1 

Query: 106 SSINKTTPKVTSSRVFDEIQFLDIHQADVAQQLEAMTFS-GTSEGIQLMSKSIALLDSTN 165
           SS++K TP++ SS VFDE QF D     V Q+++         E I  MS+ I + DS N
Sbjct: 415 SSVSKMTPELASSHVFDETQFPDNLLDGVVQEVDMTALKIENQEEIHSMSRDITVPDSFN 474

Query: 166 LDNIAAN------FGNEGSQQQLAEYDYLLNVLEDNPHDFGSDFNLSDIDKYNEWLRNTV 225
           LDNI                QQLA+Y YLL+VLE++P++F SD NLSD+DKY+EWLRNTV
Sbjct: 475 LDNIFDGGQELPAASESRGNQQLADYAYLLDVLEEDPYNFVSDLNLSDVDKYSEWLRNTV 534

Query: 226 LENKSGPDSF 229
           LEN+SGPDSF
Sbjct: 535 LENRSGPDSF 544

[Close]
BLAST of CmoCh04G021800.1 vs. NCBI nr
Match: gi|659072936|ref|XP_008467175.1| (PREDICTED: uncharacterized protein LOC103504590 isoform X2 [Cucumis melo])

HSP 1 Score: 119.8 bits (299), Expect = 6.7e-24
Identity = 67/130 (51.54%), Postives = 86/130 (66.15%), Query Frame = 1 

Query: 106 SSINKTTPKVTSSRVFDEIQFLDIHQADVAQQLEAMTFS-GTSEGIQLMSKSIALLDSTN 165
           SS++K TP++ SS VFDE QF D     V Q+++   F     E I  MS+ IA+ DS +
Sbjct: 495 SSVSKMTPELASSHVFDETQFPDNLLDGVVQEVDLTAFKIENQEEIHSMSRDIAVPDSFS 554

Query: 166 LDNIAAN------FGNEGSQQQLAEYDYLLNVLEDNPHDFGSDFNLSDIDKYNEWLRNTV 225
           LDN+                QQLAEY YLL+VLE++P++F SD NLSD+DKY+EWLRNTV
Sbjct: 555 LDNVFDGGQELPAASESRGNQQLAEYAYLLDVLEEDPYNFVSDLNLSDVDKYSEWLRNTV 614

Query: 226 LENKSGPDSF 229
           LEN+SGPDSF
Sbjct: 615 LENRSGPDSF 624

[Close]
BLAST of CmoCh04G021800.1 vs. NCBI nr
Match: gi|659072938|ref|XP_008467176.1| (PREDICTED: uncharacterized protein LOC103504590 isoform X3 [Cucumis melo])

HSP 1 Score: 119.8 bits (299), Expect = 6.7e-24
Identity = 67/130 (51.54%), Postives = 86/130 (66.15%), Query Frame = 1 

Query: 106 SSINKTTPKVTSSRVFDEIQFLDIHQADVAQQLEAMTFS-GTSEGIQLMSKSIALLDSTN 165
           SS++K TP++ SS VFDE QF D     V Q+++   F     E I  MS+ IA+ DS +
Sbjct: 465 SSVSKMTPELASSHVFDETQFPDNLLDGVVQEVDLTAFKIENQEEIHSMSRDIAVPDSFS 524

Query: 166 LDNIAAN------FGNEGSQQQLAEYDYLLNVLEDNPHDFGSDFNLSDIDKYNEWLRNTV 225
           LDN+                QQLAEY YLL+VLE++P++F SD NLSD+DKY+EWLRNTV
Sbjct: 525 LDNVFDGGQELPAASESRGNQQLAEYAYLLDVLEEDPYNFVSDLNLSDVDKYSEWLRNTV 584

Query: 226 LENKSGPDSF 229
           LEN+SGPDSF
Sbjct: 585 LENRSGPDSF 594

[Close]
BLAST of CmoCh04G021800.1 vs. NCBI nr
Match: gi|659072940|ref|XP_008467177.1| (PREDICTED: uncharacterized protein LOC103504590 isoform X4 [Cucumis melo])

HSP 1 Score: 119.8 bits (299), Expect = 6.7e-24
Identity = 67/130 (51.54%), Postives = 86/130 (66.15%), Query Frame = 1 

Query: 106 SSINKTTPKVTSSRVFDEIQFLDIHQADVAQQLEAMTFS-GTSEGIQLMSKSIALLDSTN 165
           SS++K TP++ SS VFDE QF D     V Q+++   F     E I  MS+ IA+ DS +
Sbjct: 447 SSVSKMTPELASSHVFDETQFPDNLLDGVVQEVDLTAFKIENQEEIHSMSRDIAVPDSFS 506

Query: 166 LDNIAAN------FGNEGSQQQLAEYDYLLNVLEDNPHDFGSDFNLSDIDKYNEWLRNTV 225
           LDN+                QQLAEY YLL+VLE++P++F SD NLSD+DKY+EWLRNTV
Sbjct: 507 LDNVFDGGQELPAASESRGNQQLAEYAYLLDVLEEDPYNFVSDLNLSDVDKYSEWLRNTV 566

Query: 226 LENKSGPDSF 229
           LEN+SGPDSF
Sbjct: 567 LENRSGPDSF 576

[Close]
BLAST of CmoCh04G021800.1 vs. NCBI nr
Match: gi|659072942|ref|XP_008467178.1| (PREDICTED: uncharacterized protein LOC103504590 isoform X5 [Cucumis melo])

HSP 1 Score: 119.8 bits (299), Expect = 6.7e-24
Identity = 67/130 (51.54%), Postives = 86/130 (66.15%), Query Frame = 1 

Query: 106 SSINKTTPKVTSSRVFDEIQFLDIHQADVAQQLEAMTFS-GTSEGIQLMSKSIALLDSTN 165
           SS++K TP++ SS VFDE QF D     V Q+++   F     E I  MS+ IA+ DS +
Sbjct: 423 SSVSKMTPELASSHVFDETQFPDNLLDGVVQEVDLTAFKIENQEEIHSMSRDIAVPDSFS 482

Query: 166 LDNIAAN------FGNEGSQQQLAEYDYLLNVLEDNPHDFGSDFNLSDIDKYNEWLRNTV 225
           LDN+                QQLAEY YLL+VLE++P++F SD NLSD+DKY+EWLRNTV
Sbjct: 483 LDNVFDGGQELPAASESRGNQQLAEYAYLLDVLEEDPYNFVSDLNLSDVDKYSEWLRNTV 542

Query: 226 LENKSGPDSF 229
           LEN+SGPDSF
Sbjct: 543 LENRSGPDSF 552

[Close]
BLAST of CmoCh04G021800.1 vs. NCBI nr
Match: gi|659072944|ref|XP_008467179.1| (PREDICTED: uncharacterized protein LOC103504590 isoform X6 [Cucumis melo])

HSP 1 Score: 119.8 bits (299), Expect = 6.7e-24
Identity = 67/130 (51.54%), Postives = 86/130 (66.15%), Query Frame = 1 

Query: 106 SSINKTTPKVTSSRVFDEIQFLDIHQADVAQQLEAMTFS-GTSEGIQLMSKSIALLDSTN 165
           SS++K TP++ SS VFDE QF D     V Q+++   F     E I  MS+ IA+ DS +
Sbjct: 414 SSVSKMTPELASSHVFDETQFPDNLLDGVVQEVDLTAFKIENQEEIHSMSRDIAVPDSFS 473

Query: 166 LDNIAAN------FGNEGSQQQLAEYDYLLNVLEDNPHDFGSDFNLSDIDKYNEWLRNTV 225
           LDN+                QQLAEY YLL+VLE++P++F SD NLSD+DKY+EWLRNTV
Sbjct: 474 LDNVFDGGQELPAASESRGNQQLAEYAYLLDVLEEDPYNFVSDLNLSDVDKYSEWLRNTV 533

Query: 226 LENKSGPDSF 229
           LEN+SGPDSF
Sbjct: 534 LENRSGPDSF 543

The following BLAST results are available for this feature:
BLAST of CmoCh04G021800.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh04G021800.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KPK0_CUCSA3.0e-2350.77Uncharacterized protein OS=Cucumis sativus GN=Csa_5G576720 PE=4 SV=1[more]
BLAST of CmoCh04G021800.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh04G021800.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659072936|ref|XP_008467175.1|6.7e-2451.54PREDICTED: uncharacterized protein LOC103504590 isoform X2 [Cucumis melo][more]
gi|659072938|ref|XP_008467176.1|6.7e-2451.54PREDICTED: uncharacterized protein LOC103504590 isoform X3 [Cucumis melo][more]
gi|659072940|ref|XP_008467177.1|6.7e-2451.54PREDICTED: uncharacterized protein LOC103504590 isoform X4 [Cucumis melo][more]
gi|659072942|ref|XP_008467178.1|6.7e-2451.54PREDICTED: uncharacterized protein LOC103504590 isoform X5 [Cucumis melo][more]
gi|659072944|ref|XP_008467179.1|6.7e-2451.54PREDICTED: uncharacterized protein LOC103504590 isoform X6 [Cucumis melo][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmoCh04G021800CmoCh04G021800gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmoCh04G021800.1CmoCh04G021800.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh04G021800.1.CDS.1CmoCh04G021800.1.CDS.1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh04G021800.1.exon.1CmoCh04G021800.1.exon.1exon