CmoCh04G021800 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh04G021800
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr04 : 15984050 .. 15984781 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTAGCATCCAAATTCAATTTCTTAGGCGAGGCTCAACTTCCTCCATTGGTGCAAAAGCAACACAATCATGAGGCAAACAAATCTACACAGCACAATCATGAGGTAAACAAATCTACACAGCACAATTATGAGGCAAACAAATCTATAAAGGGAGGTTCAACCTCTCTTTCAGGAGGGAAAAGATTCCGACTGATTGCTCCTAAGCCTGTGCCTAATCCTAGATTGCTTGATAGCGCCAACTTTGTAAATCATGGTCTCAAAATGGTTGACCACAACTTTCAGCATGTTGGTTCAAACTACAATTCAGTTCCATCTAGCATCAATAAGACGACTCCAAAGGTAACTTCTTCTCGTGTATTTGATGAAATTCAGTTCTTAGATATACATCAAGCTGATGTAGCTCAGCAGCTAGAAGCAATGACATTTAGTGGCACATCAGAAGGGATTCAGTTAATGTCAAAGAGCATCGCTTTACTTGATTCAACAAACTTGGACAATATTGCTGCAAATTTTGGAAATGAAGGAAGCCAACAACAATTAGCAGAATATGATTATCTCTTAAATGTTTTAGAAGACAATCCACACGACTTTGGCAGCGACTTTAATTTGAGTGATATAGATAAATACAACGAGTGGCTAAGGAACACTGTTCTCGAAAACAAGAGTGGTCCAGATAGCTTTACAATAACAATGCATAAAACTTTCGAATTGAAATCAATCAATAAATAG

mRNA sequence

ATGGTAGCATCCAAATTCAATTTCTTAGGCGAGGCTCAACTTCCTCCATTGGTGCAAAAGCAACACAATCATGAGGCAAACAAATCTACACAGCACAATCATGAGGTAAACAAATCTACACAGCACAATTATGAGGCAAACAAATCTATAAAGGGAGGTTCAACCTCTCTTTCAGGAGGGAAAAGATTCCGACTGATTGCTCCTAAGCCTGTGCCTAATCCTAGATTGCTTGATAGCGCCAACTTTGTAAATCATGGTCTCAAAATGGTTGACCACAACTTTCAGCATGTTGGTTCAAACTACAATTCAGTTCCATCTAGCATCAATAAGACGACTCCAAAGGTAACTTCTTCTCGTGTATTTGATGAAATTCAGTTCTTAGATATACATCAAGCTGATGTAGCTCAGCAGCTAGAAGCAATGACATTTAGTGGCACATCAGAAGGGATTCAGTTAATGTCAAAGAGCATCGCTTTACTTGATTCAACAAACTTGGACAATATTGCTGCAAATTTTGGAAATGAAGGAAGCCAACAACAATTAGCAGAATATGATTATCTCTTAAATGTTTTAGAAGACAATCCACACGACTTTGGCAGCGACTTTAATTTGAGTGATATAGATAAATACAACGAGTGGCTAAGGAACACTGTTCTCGAAAACAAGAGTGGTCCAGATAGCTTTACAATAACAATGCATAAAACTTTCGAATTGAAATCAATCAATAAATAG

Coding sequence (CDS)

ATGGTAGCATCCAAATTCAATTTCTTAGGCGAGGCTCAACTTCCTCCATTGGTGCAAAAGCAACACAATCATGAGGCAAACAAATCTACACAGCACAATCATGAGGTAAACAAATCTACACAGCACAATTATGAGGCAAACAAATCTATAAAGGGAGGTTCAACCTCTCTTTCAGGAGGGAAAAGATTCCGACTGATTGCTCCTAAGCCTGTGCCTAATCCTAGATTGCTTGATAGCGCCAACTTTGTAAATCATGGTCTCAAAATGGTTGACCACAACTTTCAGCATGTTGGTTCAAACTACAATTCAGTTCCATCTAGCATCAATAAGACGACTCCAAAGGTAACTTCTTCTCGTGTATTTGATGAAATTCAGTTCTTAGATATACATCAAGCTGATGTAGCTCAGCAGCTAGAAGCAATGACATTTAGTGGCACATCAGAAGGGATTCAGTTAATGTCAAAGAGCATCGCTTTACTTGATTCAACAAACTTGGACAATATTGCTGCAAATTTTGGAAATGAAGGAAGCCAACAACAATTAGCAGAATATGATTATCTCTTAAATGTTTTAGAAGACAATCCACACGACTTTGGCAGCGACTTTAATTTGAGTGATATAGATAAATACAACGAGTGGCTAAGGAACACTGTTCTCGAAAACAAGAGTGGTCCAGATAGCTTTACAATAACAATGCATAAAACTTTCGAATTGAAATCAATCAATAAATAG
Homology
[Close]
BLAST of CmoCh04G021800 vs. TrEMBL
Match: A0A0A0KPK0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G576720 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 3.0e-23
Identity = 66/130 (50.77%), Postives = 84/130 (64.62%), Query Frame = 1 

Query: 106 SSINKTTPKVTSSRVFDEIQFLDIHQADVAQQLEAMTFS-GTSEGIQLMSKSIALLDSTN 165
           SS++K TP++ SS VFDE QF D     V Q+++         E I  MS+ I + DS N
Sbjct: 415 SSVSKMTPELASSHVFDETQFPDNLLDGVVQEVDMTALKIENQEEIHSMSRDITVPDSFN 474

Query: 166 LDNIAAN------FGNEGSQQQLAEYDYLLNVLEDNPHDFGSDFNLSDIDKYNEWLRNTV 225
           LDNI                QQLA+Y YLL+VLE++P++F SD NLSD+DKY+EWLRNTV
Sbjct: 475 LDNIFDGGQELPAASESRGNQQLADYAYLLDVLEEDPYNFVSDLNLSDVDKYSEWLRNTV 534

Query: 226 LENKSGPDSF 229
           LEN+SGPDSF
Sbjct: 535 LENRSGPDSF 544

[Close]
BLAST of CmoCh04G021800 vs. NCBI nr
Match: gi|659072936|ref|XP_008467175.1| (PREDICTED: uncharacterized protein LOC103504590 isoform X2 [Cucumis melo])

HSP 1 Score: 119.8 bits (299), Expect = 6.7e-24
Identity = 67/130 (51.54%), Postives = 86/130 (66.15%), Query Frame = 1 

Query: 106 SSINKTTPKVTSSRVFDEIQFLDIHQADVAQQLEAMTFS-GTSEGIQLMSKSIALLDSTN 165
           SS++K TP++ SS VFDE QF D     V Q+++   F     E I  MS+ IA+ DS +
Sbjct: 495 SSVSKMTPELASSHVFDETQFPDNLLDGVVQEVDLTAFKIENQEEIHSMSRDIAVPDSFS 554

Query: 166 LDNIAAN------FGNEGSQQQLAEYDYLLNVLEDNPHDFGSDFNLSDIDKYNEWLRNTV 225
           LDN+                QQLAEY YLL+VLE++P++F SD NLSD+DKY+EWLRNTV
Sbjct: 555 LDNVFDGGQELPAASESRGNQQLAEYAYLLDVLEEDPYNFVSDLNLSDVDKYSEWLRNTV 614

Query: 226 LENKSGPDSF 229
           LEN+SGPDSF
Sbjct: 615 LENRSGPDSF 624

[Close]
BLAST of CmoCh04G021800 vs. NCBI nr
Match: gi|659072938|ref|XP_008467176.1| (PREDICTED: uncharacterized protein LOC103504590 isoform X3 [Cucumis melo])

HSP 1 Score: 119.8 bits (299), Expect = 6.7e-24
Identity = 67/130 (51.54%), Postives = 86/130 (66.15%), Query Frame = 1 

Query: 106 SSINKTTPKVTSSRVFDEIQFLDIHQADVAQQLEAMTFS-GTSEGIQLMSKSIALLDSTN 165
           SS++K TP++ SS VFDE QF D     V Q+++   F     E I  MS+ IA+ DS +
Sbjct: 465 SSVSKMTPELASSHVFDETQFPDNLLDGVVQEVDLTAFKIENQEEIHSMSRDIAVPDSFS 524

Query: 166 LDNIAAN------FGNEGSQQQLAEYDYLLNVLEDNPHDFGSDFNLSDIDKYNEWLRNTV 225
           LDN+                QQLAEY YLL+VLE++P++F SD NLSD+DKY+EWLRNTV
Sbjct: 525 LDNVFDGGQELPAASESRGNQQLAEYAYLLDVLEEDPYNFVSDLNLSDVDKYSEWLRNTV 584

Query: 226 LENKSGPDSF 229
           LEN+SGPDSF
Sbjct: 585 LENRSGPDSF 594

[Close]
BLAST of CmoCh04G021800 vs. NCBI nr
Match: gi|659072940|ref|XP_008467177.1| (PREDICTED: uncharacterized protein LOC103504590 isoform X4 [Cucumis melo])

HSP 1 Score: 119.8 bits (299), Expect = 6.7e-24
Identity = 67/130 (51.54%), Postives = 86/130 (66.15%), Query Frame = 1 

Query: 106 SSINKTTPKVTSSRVFDEIQFLDIHQADVAQQLEAMTFS-GTSEGIQLMSKSIALLDSTN 165
           SS++K TP++ SS VFDE QF D     V Q+++   F     E I  MS+ IA+ DS +
Sbjct: 447 SSVSKMTPELASSHVFDETQFPDNLLDGVVQEVDLTAFKIENQEEIHSMSRDIAVPDSFS 506

Query: 166 LDNIAAN------FGNEGSQQQLAEYDYLLNVLEDNPHDFGSDFNLSDIDKYNEWLRNTV 225
           LDN+                QQLAEY YLL+VLE++P++F SD NLSD+DKY+EWLRNTV
Sbjct: 507 LDNVFDGGQELPAASESRGNQQLAEYAYLLDVLEEDPYNFVSDLNLSDVDKYSEWLRNTV 566

Query: 226 LENKSGPDSF 229
           LEN+SGPDSF
Sbjct: 567 LENRSGPDSF 576

[Close]
BLAST of CmoCh04G021800 vs. NCBI nr
Match: gi|659072942|ref|XP_008467178.1| (PREDICTED: uncharacterized protein LOC103504590 isoform X5 [Cucumis melo])

HSP 1 Score: 119.8 bits (299), Expect = 6.7e-24
Identity = 67/130 (51.54%), Postives = 86/130 (66.15%), Query Frame = 1 

Query: 106 SSINKTTPKVTSSRVFDEIQFLDIHQADVAQQLEAMTFS-GTSEGIQLMSKSIALLDSTN 165
           SS++K TP++ SS VFDE QF D     V Q+++   F     E I  MS+ IA+ DS +
Sbjct: 423 SSVSKMTPELASSHVFDETQFPDNLLDGVVQEVDLTAFKIENQEEIHSMSRDIAVPDSFS 482

Query: 166 LDNIAAN------FGNEGSQQQLAEYDYLLNVLEDNPHDFGSDFNLSDIDKYNEWLRNTV 225
           LDN+                QQLAEY YLL+VLE++P++F SD NLSD+DKY+EWLRNTV
Sbjct: 483 LDNVFDGGQELPAASESRGNQQLAEYAYLLDVLEEDPYNFVSDLNLSDVDKYSEWLRNTV 542

Query: 226 LENKSGPDSF 229
           LEN+SGPDSF
Sbjct: 543 LENRSGPDSF 552

[Close]
BLAST of CmoCh04G021800 vs. NCBI nr
Match: gi|659072944|ref|XP_008467179.1| (PREDICTED: uncharacterized protein LOC103504590 isoform X6 [Cucumis melo])

HSP 1 Score: 119.8 bits (299), Expect = 6.7e-24
Identity = 67/130 (51.54%), Postives = 86/130 (66.15%), Query Frame = 1 

Query: 106 SSINKTTPKVTSSRVFDEIQFLDIHQADVAQQLEAMTFS-GTSEGIQLMSKSIALLDSTN 165
           SS++K TP++ SS VFDE QF D     V Q+++   F     E I  MS+ IA+ DS +
Sbjct: 414 SSVSKMTPELASSHVFDETQFPDNLLDGVVQEVDLTAFKIENQEEIHSMSRDIAVPDSFS 473

Query: 166 LDNIAAN------FGNEGSQQQLAEYDYLLNVLEDNPHDFGSDFNLSDIDKYNEWLRNTV 225
           LDN+                QQLAEY YLL+VLE++P++F SD NLSD+DKY+EWLRNTV
Sbjct: 474 LDNVFDGGQELPAASESRGNQQLAEYAYLLDVLEEDPYNFVSDLNLSDVDKYSEWLRNTV 533

Query: 226 LENKSGPDSF 229
           LEN+SGPDSF
Sbjct: 534 LENRSGPDSF 543

The following BLAST results are available for this feature:
BLAST of CmoCh04G021800 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh04G021800 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KPK0_CUCSA3.0e-2350.77Uncharacterized protein OS=Cucumis sativus GN=Csa_5G576720 PE=4 SV=1[more]
BLAST of CmoCh04G021800 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh04G021800 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659072936|ref|XP_008467175.1|6.7e-2451.54PREDICTED: uncharacterized protein LOC103504590 isoform X2 [Cucumis melo][more]
gi|659072938|ref|XP_008467176.1|6.7e-2451.54PREDICTED: uncharacterized protein LOC103504590 isoform X3 [Cucumis melo][more]
gi|659072940|ref|XP_008467177.1|6.7e-2451.54PREDICTED: uncharacterized protein LOC103504590 isoform X4 [Cucumis melo][more]
gi|659072942|ref|XP_008467178.1|6.7e-2451.54PREDICTED: uncharacterized protein LOC103504590 isoform X5 [Cucumis melo][more]
gi|659072944|ref|XP_008467179.1|6.7e-2451.54PREDICTED: uncharacterized protein LOC103504590 isoform X6 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G021800.1CmoCh04G021800.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh04G021800Cucurbita moschata (Rifu)cmocmoB344
CmoCh04G021800Cucurbita moschata (Rifu)cmocmoB254
CmoCh04G021800Cucurbita moschata (Rifu)cmocmoB469
CmoCh04G021800Cucumber (Gy14) v1cgycmoB0777
CmoCh04G021800Cucumber (Gy14) v1cgycmoB0800
CmoCh04G021800Cucurbita maxima (Rimu)cmacmoB301
CmoCh04G021800Cucurbita maxima (Rimu)cmacmoB426
CmoCh04G021800Cucurbita maxima (Rimu)cmacmoB729
CmoCh04G021800Cucurbita maxima (Rimu)cmacmoB742
CmoCh04G021800Wild cucumber (PI 183967)cmocpiB733
CmoCh04G021800Wild cucumber (PI 183967)cmocpiB750
CmoCh04G021800Cucumber (Chinese Long) v2cmocuB724
CmoCh04G021800Cucumber (Chinese Long) v2cmocuB742
CmoCh04G021800Melon (DHL92) v3.5.1cmomeB627
CmoCh04G021800Melon (DHL92) v3.5.1cmomeB654
CmoCh04G021800Watermelon (Charleston Gray)cmowcgB636
CmoCh04G021800Watermelon (Charleston Gray)cmowcgB666
CmoCh04G021800Watermelon (97103) v1cmowmB705
CmoCh04G021800Watermelon (97103) v1cmowmB706
CmoCh04G021800Cucurbita pepo (Zucchini)cmocpeB650
CmoCh04G021800Cucurbita pepo (Zucchini)cmocpeB663
CmoCh04G021800Cucurbita pepo (Zucchini)cmocpeB673
CmoCh04G021800Cucurbita pepo (Zucchini)cmocpeB691
CmoCh04G021800Bottle gourd (USVL1VR-Ls)cmolsiB610
CmoCh04G021800Bottle gourd (USVL1VR-Ls)cmolsiB677
CmoCh04G021800Cucumber (Gy14) v2cgybcmoB637
CmoCh04G021800Cucumber (Gy14) v2cgybcmoB655
CmoCh04G021800Melon (DHL92) v3.6.1cmomedB716
CmoCh04G021800Melon (DHL92) v3.6.1cmomedB744
CmoCh04G021800Silver-seed gourdcarcmoB1072
CmoCh04G021800Silver-seed gourdcarcmoB1137
CmoCh04G021800Silver-seed gourdcarcmoB1413
CmoCh04G021800Cucumber (Chinese Long) v3cmocucB0858
CmoCh04G021800Cucumber (Chinese Long) v3cmocucB0878
CmoCh04G021800Watermelon (97103) v2cmowmbB676
CmoCh04G021800Watermelon (97103) v2cmowmbB740
CmoCh04G021800Wax gourdcmowgoB0824
CmoCh04G021800Wax gourdcmowgoB0909