CmoCh04G020160.1 (mRNA) Cucurbita moschata (Rifu)
The following sequences are available for this feature:
Legend: CDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGCAAGCAAATGACCACATATCTGCTGGATTAGAATATTTTGATCCAAGAATAACCTCGGTACTCCTATACTGCCGTGTTTGAATATCATTAGTACATTGCTTGTAGATAAGAGAAACTTCGAGAATGGACAACTAGTGTCAAATTACTGCCATGTAAATTGCTACGAGTGTCTCATCAATGCCACTCCAATCATCATTGGCATGTAACATGAAATGTCTAATGTCTAGCAACATCCTTAATGCTAATTACATTATTAGGAAACTAAATTTTTCTGAATTACCGAGGTATGAGAAATAGTGATCAATTTCATATGCGATTGTATATCCTCAATCCAAAAGTTATCTGATCACTGATTACTGTGTCTTAATTTGGTTAAACTAAACATAGAGCTTAACAAACCTTCGTACTAACGTCTTTTTCTACATTAATGTTAACACTGATGGACATTGTTCGTTTTCCTCGTTGAACTTGAATTTATTACCAGTTATAGTCAAGAAAACACAAATCTGATCACTGGGCATTGCGGCTAAGGGTCGTTAACTTTAACCAAGAAGTCATAGGTCCAAAACTTGCTACCTGCTTGGAAGATTAACCTTCTTTGATTGGGATCTTTCAAATGTTGTGAAGTTGAATAATAGTAAGCTACTTTGAAGTTTGTGAAAGTGTAAAAGGATTGGGATCTTTCAAATGTTGTGAAGTTGAATAATAGTATGCTACTTTGAAGTTTGTGAAAGTGTAAAAGGTCACGACTTCGGGTACTACAAAAATTTCGAGGAAGAAAAACTCCCTAATTCACTTGATTTAGAATGAGAGTCGTGTATTATTTCCTTCAGTGTCAACCTTGAATTTTTGCCGGTTGTTTTTCACTCAAGCTCATTGGCAACTTGACCTGCTTGTCCACTTTGTAATGCTGGCCTATCCCTTTTGATAATACTAATGATATTTTGACTTTCTTTGAATTAGGGAAGGATTCTTCTCCCGATAGGATAATTCTGTTCAAGATCAAGCAAGTAGCGGGCATTCTGACACCACATACAATAGTGATGATGGTTATTCTCTAACTGACCTAAATCGTACAAGGAGTTTTGAGGTCCTAGATGATCTTCCTGGACGTTCTGGGCCAATTAACGTGGAAAGTCATAACGCAAGCTCTTATAGCATTGGTCTAACTCAAGTCAGATCTAATTAAGAAAGAATTAGTGCTCAAGGTAGGGAAGCATCTATTGATGCGCTAGAAAATACACAAGAATAGGTTGAAGAAAATTGTGTAGCCAGCCAAACAGCTGATATCAACTCAATGGAGATGAGAGAAGATTCAGGACAACGTATGAGAAGAATTTTACAAGAAATTGCTGCAAAAAATTTATACCTTGAAGTTCCTCAGATTGATGCCGAGGATCATACTAGCATACCAGATGTCGAATCTTCCATTCAACAAATTGATACCCGCGAGGAATATGATGATATTGGAGTATTATCAGATAATTCTAGAAGTTTTCAAGACAATGATCTTGAAAATGTAGATCCGCTGGAATCTACTTCTCACGAGGAACTGAATGAAGATCTAGGTATGGGAGTTGAGCCAAATGATTGGCAAGCATATGGTTTTCAACGGGATGAATGGAAAAATAGCATTGAAGAAGATATAAACGAAACTCGGTTGGAAAGCATCACACTACTAATTGGTCTGGAGAATTCTCGAGTACGACACACAGAGGAGATATTCATCTGTAAAATGCCCCTGGAGCTTCACATGAAAATGTTATCATTGTGGAGGATGTGCCTAATTGGTTAGAGGGCTCTCCTAGTCGGGAGGCTACATCCAGCCGAAGGTTGGAGACCTTTTATTTTCGTGAAGAAAATAATGTGCATAATGTGGAAATGAGAGAACTTTTAAATACGTATCAAAAAATTTATATAACAACATGCCTGGCGGAATTCAGACTAAATGGTGAATTTACATGTGGACTATTTTTCTTTATTACGCAGGAGAAGTGTCTCTACTCTTCTTAGTAGTGGTTTCTGAGAAAGTCTTGACCAGTTAATTCGATCTTACATAGACAGGCGAGGTCACAGTACCAGTAATGGGGATCTAGACGAGACGATGTCCCCTTACACGTCTGTAAAACAAGAGCAAGAGCACGACAGGCAGACTGCAGGTCAAACGGGTTCTGCTGCGAGCCATCCACTTGCTTTGCCTCTGCCACCTGCAATGCCCCCTCGGCAACTTTGGGAACATGAATTGAGTCATGATAGTTTGTCAAGACGTGATTTCCATCAGCAGTTTGGAGCTGTATGTCTCATCATTGTTCCCTTGTTTGTTGTCTTTTCTGTTTGGATGAAATCAGTTGGATTAAAGTAAATAAAAGAGATAGGAAAACGTGCAAGTATCAATGGTAAACGATTGATGAATTGTGATTCTATAATTCAAATTTAGAATTATTGCAATTGTCTATTAGGCGAAGTCCAGTGTTGGTTGTTGGATAATCTGGTCATCTTTTTTTCGTTCTTTATTTTATTGTTATTACTATTCTTTTAAATTTGATGTTGTTGCTGAATTTTACAGGACTGGGAGATCATTAATGATTTGAGGATCGACATGTCTAGGCTATAG ATGCAAGCAAATGACCACATATCTGCTGGATTAGAATATTTTGATCCAAGAATAACCTCGGATAATTCTGTTCAAGATCAAGCAAGTAGCGGGCATTCTGACACCACATACAATAGTGATGATGGTTATTCTCTAACTGACCTAAATCGTACAAGGAGTTTTGAGGTCCTAGATGATCTTCCTGGACGTTCTGGGCCAATTAACGTGGAAAGTCATAACGCAAGCTCTTATAGCATTGGTCTAACTCAAGTTGAAGAAAATTGTGTAGCCAGCCAAACAGCTGATATCAACTCAATGGAGATGAGAGAAGATTCAGGACAACGTATGAGAAGAATTTTACAAGAAATTGCTGCAAAAAATTTATACCTTGAAGTTCCTCAGATTGATGCCGAGGATCATACTAGCATACCAGATGTCGAATCTTCCATTCAACAAATTGATACCCGCGAGGAATATGATGATATTGGAGTATTATCAGATAATTCTAGAAGTTTTCAAGACAATGATCTTGAAAATGTAGATCCGCTGGAATCTACTTCTCACGAGGAACTGAATGAAGATCTAGGTATGGGAGTTGAGCCAAATGATTGGCAAGCATATGGTTTTCAACGGGATGAATGGAAAAATAGCATTGAAGAAGATATAAACGAAACTCGGTTGGAAAGCATCACACTACTAATTGGTCTGGAGAATTCTCGAGTACGACACACAGAGGAGATATTCATCTGTAAAATGCCCCTGGAGCTTCACATGAAAATGTTATCATTGTGGAGGATGTGCCTAATTGGAGAAGTGTCTCTACTCTTCTTAGTAGTGGTTTCTGAGAAAGTCTTGACCAACAGGCGAGGTCACAGTACCAGTAATGGGGATCTAGACGAGACGATGTCCCCTTACACGTCTGTAAAACAAGAGCAAGAGCACGACAGGCAGACTGCAGGTCAAACGGGTTCTGCTGCGAGCCATCCACTTGCTTTGCCTCTGCCACCTGCAATGCCCCCTCGGCAACTTTGGGAACATGAATTGAGTCATGATAGTTTGTCAAGACGTGATTTCCATCAGCAGTTTGGAGCTGACTGGGAGATCATTAATGATTTGAGGATCGACATGTCTAGGCTATAG ATGCAAGCAAATGACCACATATCTGCTGGATTAGAATATTTTGATCCAAGAATAACCTCGGATAATTCTGTTCAAGATCAAGCAAGTAGCGGGCATTCTGACACCACATACAATAGTGATGATGGTTATTCTCTAACTGACCTAAATCGTACAAGGAGTTTTGAGGTCCTAGATGATCTTCCTGGACGTTCTGGGCCAATTAACGTGGAAAGTCATAACGCAAGCTCTTATAGCATTGGTCTAACTCAAGTTGAAGAAAATTGTGTAGCCAGCCAAACAGCTGATATCAACTCAATGGAGATGAGAGAAGATTCAGGACAACGTATGAGAAGAATTTTACAAGAAATTGCTGCAAAAAATTTATACCTTGAAGTTCCTCAGATTGATGCCGAGGATCATACTAGCATACCAGATGTCGAATCTTCCATTCAACAAATTGATACCCGCGAGGAATATGATGATATTGGAGTATTATCAGATAATTCTAGAAGTTTTCAAGACAATGATCTTGAAAATGTAGATCCGCTGGAATCTACTTCTCACGAGGAACTGAATGAAGATCTAGGTATGGGAGTTGAGCCAAATGATTGGCAAGCATATGGTTTTCAACGGGATGAATGGAAAAATAGCATTGAAGAAGATATAAACGAAACTCGGTTGGAAAGCATCACACTACTAATTGGTCTGGAGAATTCTCGAGTACGACACACAGAGGAGATATTCATCTGTAAAATGCCCCTGGAGCTTCACATGAAAATGTTATCATTGTGGAGGATGTGCCTAATTGGAGAAGTGTCTCTACTCTTCTTAGTAGTGGTTTCTGAGAAAGTCTTGACCAACAGGCGAGGTCACAGTACCAGTAATGGGGATCTAGACGAGACGATGTCCCCTTACACGTCTGTAAAACAAGAGCAAGAGCACGACAGGCAGACTGCAGGTCAAACGGGTTCTGCTGCGAGCCATCCACTTGCTTTGCCTCTGCCACCTGCAATGCCCCCTCGGCAACTTTGGGAACATGAATTGAGTCATGATAGTTTGTCAAGACGTGATTTCCATCAGCAGTTTGGAGCTGACTGGGAGATCATTAATGATTTGAGGATCGACATGTCTAGGCTATAG
BLAST of CmoCh04G020160.1 vs. TrEMBL
Match: A0A0A0KDG6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G149350 PE=4 SV=1) HSP 1 Score: 322.8 bits (826), Expect = 5.6e-85 Identity = 213/436 (48.85%), Postives = 250/436 (57.34%), Query Frame = 1
BLAST of CmoCh04G020160.1 vs. TrEMBL
Match: B9SCM1_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0475470 PE=4 SV=1) HSP 1 Score: 86.7 bits (213), Expect = 6.7e-14 Identity = 45/94 (47.87%), Postives = 58/94 (61.70%), Query Frame = 1
BLAST of CmoCh04G020160.1 vs. TrEMBL
Match: V4SFT9_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10027818mg PE=4 SV=1) HSP 1 Score: 78.6 bits (192), Expect = 1.8e-11 Identity = 41/95 (43.16%), Postives = 58/95 (61.05%), Query Frame = 1
BLAST of CmoCh04G020160.1 vs. TrEMBL
Match: A0A061GZU9_THECC (Ring/U-Box superfamily protein, putative isoform 4 (Fragment) OS=Theobroma cacao GN=TCM_041566 PE=4 SV=1) HSP 1 Score: 75.9 bits (185), Expect = 1.2e-10 Identity = 39/94 (41.49%), Postives = 57/94 (60.64%), Query Frame = 1
BLAST of CmoCh04G020160.1 vs. TrEMBL
Match: A0A061GW37_THECC (Ring/U-Box superfamily protein, putative isoform 1 OS=Theobroma cacao GN=TCM_041566 PE=4 SV=1) HSP 1 Score: 75.9 bits (185), Expect = 1.2e-10 Identity = 39/94 (41.49%), Postives = 57/94 (60.64%), Query Frame = 1
BLAST of CmoCh04G020160.1 vs. TAIR10
Match: AT2G27950.1 (AT2G27950.1 Ring/U-Box superfamily protein) HSP 1 Score: 67.8 bits (164), Expect = 1.6e-11 Identity = 39/96 (40.62%), Postives = 55/96 (57.29%), Query Frame = 1
BLAST of CmoCh04G020160.1 vs. NCBI nr
Match: gi|449456168|ref|XP_004145822.1| (PREDICTED: uncharacterized protein LOC101214410 isoform X2 [Cucumis sativus]) HSP 1 Score: 322.8 bits (826), Expect = 8.0e-85 Identity = 213/436 (48.85%), Postives = 250/436 (57.34%), Query Frame = 1
BLAST of CmoCh04G020160.1 vs. NCBI nr
Match: gi|778713418|ref|XP_011657046.1| (PREDICTED: uncharacterized protein LOC101214410 isoform X1 [Cucumis sativus]) HSP 1 Score: 322.4 bits (825), Expect = 1.0e-84 Identity = 213/437 (48.74%), Postives = 250/437 (57.21%), Query Frame = 1
BLAST of CmoCh04G020160.1 vs. NCBI nr
Match: gi|659130940|ref|XP_008465430.1| (PREDICTED: uncharacterized protein LOC103503044 isoform X2 [Cucumis melo]) HSP 1 Score: 256.1 bits (653), Expect = 9.2e-65 Identity = 192/445 (43.15%), Postives = 234/445 (52.58%), Query Frame = 1
BLAST of CmoCh04G020160.1 vs. NCBI nr
Match: gi|659130942|ref|XP_008465431.1| (PREDICTED: probable GPI-anchored adhesin-like protein PGA55 isoform X3 [Cucumis melo]) HSP 1 Score: 255.8 bits (652), Expect = 1.2e-64 Identity = 192/446 (43.05%), Postives = 234/446 (52.47%), Query Frame = 1
BLAST of CmoCh04G020160.1 vs. NCBI nr
Match: gi|659130938|ref|XP_008465429.1| (PREDICTED: uncharacterized protein LOC103503044 isoform X1 [Cucumis melo]) HSP 1 Score: 255.8 bits (652), Expect = 1.2e-64 Identity = 192/446 (43.05%), Postives = 234/446 (52.47%), Query Frame = 1
The following BLAST results are available for this feature:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
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