CmoCh04G018480.1 (mRNA) Cucurbita moschata (Rifu)

Overview
NameCmoCh04G018480.1
TypemRNA
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr04 : 9283839 .. 9286554 (-)
Sequence length827
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTCGAGAGTTCTCTAGTGTCAGTTACGAAGGTTAAAACGTCATTGTTTAAGAATATAAAAAGAAACACACGATTGTAAAAGAGAGTAGAGATGTTTACGGGGTCGGTCAAAGCTTCTCTGTCCCCTATTTCATTCTCATTCTAGTTAAATTCTCCACTTTTTTTTTCTTTTTGTGGAGATCTAGGTAGGGAATCCAACAGAGAATTTGTCGAGATGGATTCTCCAATTCTCGACCGTTAATTTTTACCAGATTATTATTTTAAAAAAATACATTTTATTAAAAAAATATTTTAAAAATCTTAATATTTCATAAATAAATATATATAAAGTCTACTAACATAATTTATACAAATTTCAAATTTTAAATATAACTTTTAACCATTTAAAGTAAATATTAAAATTAGACTTCAAAATTAATTAATTAATTTTTTTTTAAAAAAATATTACTGCGTAAATATAATCCATCTCAGCTCCATTTACCTCACAGTTAGAGAGCCATCCAAATGCAGCAAAAATCAGCGCCAATCGAGAGAGTCGCATCCCGGCAAATCGCTACCTTCTTTTTCCGTTCTAAAACCCAAACACATCCGTCAAGTCCTCCTGCAGTTCATTGCGTGCGAGATCAAGAACATCGAGAATTCTTTTCAGTGGACTGTTGAAAGCGTTCCTGGGACTGATTCTTTCTGTTCAATTCAAAAATCTGCTTCTACTTCGATCTCGATACCGACGACTACTGCCTCTCTAGAACTGACGCCTAAAACCGACGCCAAGAAGATCTGCCTCTTGTTCTGCCAGGCGAGACGAAGATTCTTCGCAGAAAATATCTGCCGAGTCTGATGGAATTGAGCCACGTGATGGCTTATGGAGGTTAGTTCAATTATGTAGCTATATTGTGAAGAAATCTGTAGGAATATGCTTTCAATTTATGATCCAGAAGTTTTTAATATGCTTTCAATTTATGGTTTCCATTTGAGACTTCAAAATGTCCCCGCAGAAAGAACGATTAAGATTGTATTGCTGCGTAGGTCAGCCCGGTGAAGTTATTTGTGTTCCTGATCGCAATGTCGAATTGTTGAAATTTTGAAAGTTCTCCAATGTTTTTAAGTTTATAGCATTTTTCACTGCGAAACAACATTGCGTATTCTGCCTTTAATTCAAGCATGATAAACATAAGCTGTTCGAGTTTCACAAAAGTTCATTCAAAATCAAAAGTCCTTTGGACTAATGCTTGCACAGTTCTTATATTAGGAAGTTTGAAGATGGATTACGAACATAATTATGTCCAATGCTAAAGGAATTCGTGAACAACATGTTGCCTTTCTGGCATCCTTAAGTTCCCCTGTGTGAACTTTGAGCAACTCTCCCTTATTTATGCACTGCTGAAATTGTTCGTCTCTTCATTGACGCCTGTTCTCTCCATCTTTCCAACAGGAAATTTTGACTAAGCTTTTACTATTGCTCGAATCTCGATTATATATATCAATTTGGAGAGGAGGGCCGACTAACTGTGTACCTTTTGACATTCATGATGCAGATTCATTAACAAGCAGAACTTTACTTTTTAGAAGATAACTTGCTCTGCCTATTAGAATCCCTCACTTTTTTGAGTTTTTCCTCCTCTTTAGTGGCTGTTATTATTATTATTATTATTTTTTTTGTAGCAGAGGCTTTACTTGGGTGACAATACTTTACCATCCTTTGAAGTGGAATTCCTGCTACAAAATAGTGTGCAGCAGTTGCCAGATTGTGACCATGTAAGCTCTCGTGTTCATAAACAAGGCATGTGATGTAATTGTGAGAAGGAAAGTCCAACCGACACAACATCTATTAGTGGTGGACTTCAACTATTATAAATGATATCAGAGCCAAACATAGAGCGATGTGCTAGCAAGGAGGTTGAGCCCCAAAGGGATAAATATGAGGCGGTGTGCCAGCAAAGACGATAGGCTCTGAAGGGAGGTGGATTGAGGATTTCACATTGATTGGAGAAAAGAACGAGGGCGAGCGAGGACGCTGGCCCCAAAGGGAGTGGATTGTGAGACCTCACATTGGTTGAGGAGGAAAACAAAAGATCGTTTAATAAGAGTGTGAAAACCTCTCCCTATTCGACGTATTTCAAAAACTTTAAGGAGGAGTCTGAAGAAAAAAGTTCAACTAAGACAATATTTGATAGCAGTAAGCTCCACCGAAATCTTTAATATGGAATGCTAGAGTTATTTTTGAATATTTCTCTCAAAGTTGCATTGTGAGCTAAGGTTAATCTAGACTTTTGTAGTGCAATTGTCGAATATATTTTAGTTTGTAATCTCTCTCTGTCATGACAGAATTTGCTACTTTCCAGATAGCAATTGCTTTACCGGACGATGGAGTATGGCAAGGACTTCATAAATAGCTGCAGCATTTTCCTACGGTACGTCTATTATATTTCTGCTGTTATCCTTTTGTTATTGAGGATTGGGGTCTATTTCTGGAGGAAGGACATAACGTTCCTAGAATATCGTCATAGAAATAAAAATGCAAGCAATATAAATATGTAAAATCTTAAAACATGTTAAAACTAAACTCAAAACTCCTCGAAACTCGAGAAAAAAATATAAAATTTTAAAATTTTGTGACCAAATGAAAATTAAACCCAAAATTTAAGAGAAAAAGTGTAAAATTCTGACCTTTAAGAATCAAAAGTAAACTATATTGGAGACTGTAAAGAGGGAA

mRNA sequence

ATGGCTCGAGAGTTCTCTAGTGTCAGTTACGAAGTTAGAGAGCCATCCAAATGCAGCAAAAATCAGCGCCAATCGAGAGAGTCGCATCCCGGCAAATCGCTACCTTCTTTTTCCGTTCTAAAACCCAAACACATCCGTCAATTCATTGCGTGCGAGATCAAGAACATCGAGAATTCTTTTCAGTGGACTGTTGAAAGCGTTCCTGGGACTGATTCTTTCTGTTCAATTCAAAAATCTGCTTCTACTTCGATCTCGATACCGACGACTACTGCCTCTCTAGAACTGACGCCTAAAACCGACGCCAAGAAGATCTGCCTCTTGCGAGACGAAGATTCTTCGCAGAAAATATCTGCCGAGTCTGATGGAATTGAGCCACGTGATGGCTTATGGAGCAGAGGCTTTACTTGGGTGACAATACTTTACCATCCTTTGAAGTGGAATTCCTGCTACAAAATAATAGCAATTGCTTTACCGGACGATGGAGTATGGCAAGGACTTCATAAATAGCTGCAGCATTTTCCTACGGTACGTCTATTATATTTCTGCTGTTATCCTTTTGTTATTGAGGATTGGGGTCTATTTCTGGAGGAAGGACATAACGTTCCTAGAATATCGTCATAGAAATAAAAATGCAAGCAATATAAATATGTAAAATCTTAAAACATGTTAAAACTAAACTCAAAACTCCTCGAAACTCGAGAAAAAAATATAAAATTTTAAAATTTTGTGACCAAATGAAAATTAAACCCAAAATTTAAGAGAAAAAGTGTAAAATTCTGACCTTTAAGAATCAAAAGTAAACTATATTGGAGACTGTAAAGAGGGAA

Coding sequence (CDS)

ATGGCTCGAGAGTTCTCTAGTGTCAGTTACGAAGTTAGAGAGCCATCCAAATGCAGCAAAAATCAGCGCCAATCGAGAGAGTCGCATCCCGGCAAATCGCTACCTTCTTTTTCCGTTCTAAAACCCAAACACATCCGTCAATTCATTGCGTGCGAGATCAAGAACATCGAGAATTCTTTTCAGTGGACTGTTGAAAGCGTTCCTGGGACTGATTCTTTCTGTTCAATTCAAAAATCTGCTTCTACTTCGATCTCGATACCGACGACTACTGCCTCTCTAGAACTGACGCCTAAAACCGACGCCAAGAAGATCTGCCTCTTGCGAGACGAAGATTCTTCGCAGAAAATATCTGCCGAGTCTGATGGAATTGAGCCACGTGATGGCTTATGGAGCAGAGGCTTTACTTGGGTGACAATACTTTACCATCCTTTGAAGTGGAATTCCTGCTACAAAATAATAGCAATTGCTTTACCGGACGATGGAGTATGGCAAGGACTTCATAAATAG
Homology
[Close]
BLAST of CmoCh04G018480.1 vs. TrEMBL
Match: A0A0A0KQ59_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G598760 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 7.7e-18
Identity = 58/97 (59.79%), Postives = 67/97 (69.07%), Query Frame = 1 

Query: 45  IRQFIACEIKNIENSFQWTVESVPG-TDSFCSIQKSASTSISIPTTTAS-----LELTPK 104
           I+  IACEIKN ENS+ WT+ESVPG TDSFCSIQ SASTS SIP  TAS     LELT K
Sbjct: 40  IKNRIACEIKNFENSYHWTIESVPGTTDSFCSIQNSASTSTSIPMATASAAIAALELTSK 99

Query: 105 TDAKKICLL---RDEDSSQKISAESDGIEPRDGLWSR 133
            DAKKICL      +  ++KI+ ESDGI+ R   W +
Sbjct: 100 NDAKKICLFFCPETKALAEKIADESDGIDLRSISWRK 136

[Close]
BLAST of CmoCh04G018480.1 vs. NCBI nr
Match: gi|449434967|ref|XP_004135267.1| (PREDICTED: ribose-phosphate pyrophosphokinase 3, mitochondrial [Cucumis sativus])

HSP 1 Score: 98.6 bits (244), Expect = 1.1e-17
Identity = 58/97 (59.79%), Postives = 67/97 (69.07%), Query Frame = 1 

Query: 45  IRQFIACEIKNIENSFQWTVESVPG-TDSFCSIQKSASTSISIPTTTAS-----LELTPK 104
           I+  IACEIKN ENS+ WT+ESVPG TDSFCSIQ SASTS SIP  TAS     LELT K
Sbjct: 40  IKNRIACEIKNFENSYHWTIESVPGTTDSFCSIQNSASTSTSIPMATASAAIAALELTSK 99

Query: 105 TDAKKICLL---RDEDSSQKISAESDGIEPRDGLWSR 133
            DAKKICL      +  ++KI+ ESDGI+ R   W +
Sbjct: 100 NDAKKICLFFCPETKALAEKIADESDGIDLRSISWRK 136

[Close]
BLAST of CmoCh04G018480.1 vs. NCBI nr
Match: gi|659090733|ref|XP_008446171.1| (PREDICTED: ribose-phosphate pyrophosphokinase 4-like [Cucumis melo])

HSP 1 Score: 95.5 bits (236), Expect = 9.3e-17
Identity = 62/125 (49.60%), Postives = 75/125 (60.00%), Query Frame = 1 

Query: 20  KNQRQSRESHPGKSLPSFS---VLKPKHIRQFIACEIKNIENSFQWTVESVPG-TDSFCS 79
           KN     +S    S   FS    +    I+  IACEIKN EN++QWT+ESVPG TDSFCS
Sbjct: 12  KNPNTLLDSSRNSSSVPFSRTYAIGDSKIKNRIACEIKNFENTYQWTIESVPGTTDSFCS 71

Query: 80  IQKSASTSISIPTTTAS-----LELTPKTDAKKICLL---RDEDSSQKISAESDGIEPRD 133
           IQ SAS S S+P   AS     LELT KTDAKKICL      +  ++KI+ ESDGI+ R 
Sbjct: 72  IQNSASISTSVPMAAASAAVAALELTSKTDAKKICLFFCPETKTLAEKIADESDGIDLRS 131

[Close]
BLAST of CmoCh04G018480.1 vs. NCBI nr
Match: gi|659090619|ref|XP_008446110.1| (PREDICTED: ribose-phosphate pyrophosphokinase 3, mitochondrial-like [Cucumis melo])

HSP 1 Score: 92.0 bits (227), Expect = 1.0e-15
Identity = 55/96 (57.29%), Postives = 65/96 (67.71%), Query Frame = 1 

Query: 45  IRQFIACEIKNIENSFQWTVESVPG-TDSFCSIQKSASTSISIPTTTAS-----LELTPK 104
           I+  IACEIKN EN++QWT+ESVPG TDSFCSIQ SAS S S+P   AS     LELT K
Sbjct: 40  IKNRIACEIKNFENTYQWTIESVPGTTDSFCSIQNSASISTSVPMAAASAAVAALELTSK 99

Query: 105 TDAKKICLLRDED----SSQKISAESDGIEPRDGLW 131
           TDAKKICL    +    + + I+ ESDGI+ R   W
Sbjct: 100 TDAKKICLFFCPETKTLAEKLIADESDGIDLRSISW 135

The following BLAST results are available for this feature:
BLAST of CmoCh04G018480.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh04G018480.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KQ59_CUCSA7.7e-1859.79Uncharacterized protein OS=Cucumis sativus GN=Csa_5G598760 PE=4 SV=1[more]
BLAST of CmoCh04G018480.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh04G018480.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449434967|ref|XP_004135267.1|1.1e-1759.79PREDICTED: ribose-phosphate pyrophosphokinase 3, mitochondrial [Cucumis sativus][more]
gi|659090733|ref|XP_008446171.1|9.3e-1749.60PREDICTED: ribose-phosphate pyrophosphokinase 4-like [Cucumis melo][more]
gi|659090619|ref|XP_008446110.1|1.0e-1557.29PREDICTED: ribose-phosphate pyrophosphokinase 3, mitochondrial-like [Cucumis mel... [more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmoCh04G018480CmoCh04G018480gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmoCh04G018480.1CmoCh04G018480.1-proteinpolypeptide


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh04G018480.1.three_prime_UTR.1CmoCh04G018480.1.three_prime_UTR.1three_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh04G018480.1.CDS.6CmoCh04G018480.1.CDS.6CDS
CmoCh04G018480.1.CDS.5CmoCh04G018480.1.CDS.5CDS
CmoCh04G018480.1.CDS.4CmoCh04G018480.1.CDS.4CDS
CmoCh04G018480.1.CDS.3CmoCh04G018480.1.CDS.3CDS
CmoCh04G018480.1.CDS.2CmoCh04G018480.1.CDS.2CDS
CmoCh04G018480.1.CDS.1CmoCh04G018480.1.CDS.1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh04G018480.1.exon.6CmoCh04G018480.1.exon.6exon
CmoCh04G018480.1.exon.5CmoCh04G018480.1.exon.5exon
CmoCh04G018480.1.exon.4CmoCh04G018480.1.exon.4exon
CmoCh04G018480.1.exon.3CmoCh04G018480.1.exon.3exon
CmoCh04G018480.1.exon.2CmoCh04G018480.1.exon.2exon
CmoCh04G018480.1.exon.1CmoCh04G018480.1.exon.1exon