CmoCh04G018480 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh04G018480
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr04 : 9283839 .. 9286554 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTCGAGAGTTCTCTAGTGTCAGTTACGAAGGTTAAAACGTCATTGTTTAAGAATATAAAAAGAAACACACGATTGTAAAAGAGAGTAGAGATGTTTACGGGGTCGGTCAAAGCTTCTCTGTCCCCTATTTCATTCTCATTCTAGTTAAATTCTCCACTTTTTTTTTCTTTTTGTGGAGATCTAGGTAGGGAATCCAACAGAGAATTTGTCGAGATGGATTCTCCAATTCTCGACCGTTAATTTTTACCAGATTATTATTTTAAAAAAATACATTTTATTAAAAAAATATTTTAAAAATCTTAATATTTCATAAATAAATATATATAAAGTCTACTAACATAATTTATACAAATTTCAAATTTTAAATATAACTTTTAACCATTTAAAGTAAATATTAAAATTAGACTTCAAAATTAATTAATTAATTTTTTTTTAAAAAAATATTACTGCGTAAATATAATCCATCTCAGCTCCATTTACCTCACAGTTAGAGAGCCATCCAAATGCAGCAAAAATCAGCGCCAATCGAGAGAGTCGCATCCCGGCAAATCGCTACCTTCTTTTTCCGTTCTAAAACCCAAACACATCCGTCAAGTCCTCCTGCAGTTCATTGCGTGCGAGATCAAGAACATCGAGAATTCTTTTCAGTGGACTGTTGAAAGCGTTCCTGGGACTGATTCTTTCTGTTCAATTCAAAAATCTGCTTCTACTTCGATCTCGATACCGACGACTACTGCCTCTCTAGAACTGACGCCTAAAACCGACGCCAAGAAGATCTGCCTCTTGTTCTGCCAGGCGAGACGAAGATTCTTCGCAGAAAATATCTGCCGAGTCTGATGGAATTGAGCCACGTGATGGCTTATGGAGGTTAGTTCAATTATGTAGCTATATTGTGAAGAAATCTGTAGGAATATGCTTTCAATTTATGATCCAGAAGTTTTTAATATGCTTTCAATTTATGGTTTCCATTTGAGACTTCAAAATGTCCCCGCAGAAAGAACGATTAAGATTGTATTGCTGCGTAGGTCAGCCCGGTGAAGTTATTTGTGTTCCTGATCGCAATGTCGAATTGTTGAAATTTTGAAAGTTCTCCAATGTTTTTAAGTTTATAGCATTTTTCACTGCGAAACAACATTGCGTATTCTGCCTTTAATTCAAGCATGATAAACATAAGCTGTTCGAGTTTCACAAAAGTTCATTCAAAATCAAAAGTCCTTTGGACTAATGCTTGCACAGTTCTTATATTAGGAAGTTTGAAGATGGATTACGAACATAATTATGTCCAATGCTAAAGGAATTCGTGAACAACATGTTGCCTTTCTGGCATCCTTAAGTTCCCCTGTGTGAACTTTGAGCAACTCTCCCTTATTTATGCACTGCTGAAATTGTTCGTCTCTTCATTGACGCCTGTTCTCTCCATCTTTCCAACAGGAAATTTTGACTAAGCTTTTACTATTGCTCGAATCTCGATTATATATATCAATTTGGAGAGGAGGGCCGACTAACTGTGTACCTTTTGACATTCATGATGCAGATTCATTAACAAGCAGAACTTTACTTTTTAGAAGATAACTTGCTCTGCCTATTAGAATCCCTCACTTTTTTGAGTTTTTCCTCCTCTTTAGTGGCTGTTATTATTATTATTATTATTTTTTTTGTAGCAGAGGCTTTACTTGGGTGACAATACTTTACCATCCTTTGAAGTGGAATTCCTGCTACAAAATAGTGTGCAGCAGTTGCCAGATTGTGACCATGTAAGCTCTCGTGTTCATAAACAAGGCATGTGATGTAATTGTGAGAAGGAAAGTCCAACCGACACAACATCTATTAGTGGTGGACTTCAACTATTATAAATGATATCAGAGCCAAACATAGAGCGATGTGCTAGCAAGGAGGTTGAGCCCCAAAGGGATAAATATGAGGCGGTGTGCCAGCAAAGACGATAGGCTCTGAAGGGAGGTGGATTGAGGATTTCACATTGATTGGAGAAAAGAACGAGGGCGAGCGAGGACGCTGGCCCCAAAGGGAGTGGATTGTGAGACCTCACATTGGTTGAGGAGGAAAACAAAAGATCGTTTAATAAGAGTGTGAAAACCTCTCCCTATTCGACGTATTTCAAAAACTTTAAGGAGGAGTCTGAAGAAAAAAGTTCAACTAAGACAATATTTGATAGCAGTAAGCTCCACCGAAATCTTTAATATGGAATGCTAGAGTTATTTTTGAATATTTCTCTCAAAGTTGCATTGTGAGCTAAGGTTAATCTAGACTTTTGTAGTGCAATTGTCGAATATATTTTAGTTTGTAATCTCTCTCTGTCATGACAGAATTTGCTACTTTCCAGATAGCAATTGCTTTACCGGACGATGGAGTATGGCAAGGACTTCATAAATAGCTGCAGCATTTTCCTACGGTACGTCTATTATATTTCTGCTGTTATCCTTTTGTTATTGAGGATTGGGGTCTATTTCTGGAGGAAGGACATAACGTTCCTAGAATATCGTCATAGAAATAAAAATGCAAGCAATATAAATATGTAAAATCTTAAAACATGTTAAAACTAAACTCAAAACTCCTCGAAACTCGAGAAAAAAATATAAAATTTTAAAATTTTGTGACCAAATGAAAATTAAACCCAAAATTTAAGAGAAAAAGTGTAAAATTCTGACCTTTAAGAATCAAAAGTAAACTATATTGGAGACTGTAAAGAGGGAA

mRNA sequence

ATGGCTCGAGAGTTCTCTAGTGTCAGTTACGAAGTTAGAGAGCCATCCAAATGCAGCAAAAATCAGCGCCAATCGAGAGAGTCGCATCCCGGCAAATCGCTACCTTCTTTTTCCGTTCTAAAACCCAAACACATCCGTCAATTCATTGCGTGCGAGATCAAGAACATCGAGAATTCTTTTCAGTGGACTGTTGAAAGCGTTCCTGGGACTGATTCTTTCTGTTCAATTCAAAAATCTGCTTCTACTTCGATCTCGATACCGACGACTACTGCCTCTCTAGAACTGACGCCTAAAACCGACGCCAAGAAGATCTGCCTCTTGCGAGACGAAGATTCTTCGCAGAAAATATCTGCCGAGTCTGATGGAATTGAGCCACGTGATGGCTTATGGAGCAGAGGCTTTACTTGGGTGACAATACTTTACCATCCTTTGAAGTGGAATTCCTGCTACAAAATAATAGCAATTGCTTTACCGGACGATGGAGTATGGCAAGGACTTCATAAATAGCTGCAGCATTTTCCTACGGTACGTCTATTATATTTCTGCTGTTATCCTTTTGTTATTGAGGATTGGGGTCTATTTCTGGAGGAAGGACATAACGTTCCTAGAATATCGTCATAGAAATAAAAATGCAAGCAATATAAATATGTAAAATCTTAAAACATGTTAAAACTAAACTCAAAACTCCTCGAAACTCGAGAAAAAAATATAAAATTTTAAAATTTTGTGACCAAATGAAAATTAAACCCAAAATTTAAGAGAAAAAGTGTAAAATTCTGACCTTTAAGAATCAAAAGTAAACTATATTGGAGACTGTAAAGAGGGAA

Coding sequence (CDS)

ATGGCTCGAGAGTTCTCTAGTGTCAGTTACGAAGTTAGAGAGCCATCCAAATGCAGCAAAAATCAGCGCCAATCGAGAGAGTCGCATCCCGGCAAATCGCTACCTTCTTTTTCCGTTCTAAAACCCAAACACATCCGTCAATTCATTGCGTGCGAGATCAAGAACATCGAGAATTCTTTTCAGTGGACTGTTGAAAGCGTTCCTGGGACTGATTCTTTCTGTTCAATTCAAAAATCTGCTTCTACTTCGATCTCGATACCGACGACTACTGCCTCTCTAGAACTGACGCCTAAAACCGACGCCAAGAAGATCTGCCTCTTGCGAGACGAAGATTCTTCGCAGAAAATATCTGCCGAGTCTGATGGAATTGAGCCACGTGATGGCTTATGGAGCAGAGGCTTTACTTGGGTGACAATACTTTACCATCCTTTGAAGTGGAATTCCTGCTACAAAATAATAGCAATTGCTTTACCGGACGATGGAGTATGGCAAGGACTTCATAAATAG
Homology
[Close]
BLAST of CmoCh04G018480 vs. TrEMBL
Match: A0A0A0KQ59_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G598760 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 7.7e-18
Identity = 58/97 (59.79%), Postives = 67/97 (69.07%), Query Frame = 1 

Query: 45  IRQFIACEIKNIENSFQWTVESVPG-TDSFCSIQKSASTSISIPTTTAS-----LELTPK 104
           I+  IACEIKN ENS+ WT+ESVPG TDSFCSIQ SASTS SIP  TAS     LELT K
Sbjct: 40  IKNRIACEIKNFENSYHWTIESVPGTTDSFCSIQNSASTSTSIPMATASAAIAALELTSK 99

Query: 105 TDAKKICLL---RDEDSSQKISAESDGIEPRDGLWSR 133
            DAKKICL      +  ++KI+ ESDGI+ R   W +
Sbjct: 100 NDAKKICLFFCPETKALAEKIADESDGIDLRSISWRK 136

[Close]
BLAST of CmoCh04G018480 vs. NCBI nr
Match: gi|449434967|ref|XP_004135267.1| (PREDICTED: ribose-phosphate pyrophosphokinase 3, mitochondrial [Cucumis sativus])

HSP 1 Score: 98.6 bits (244), Expect = 1.1e-17
Identity = 58/97 (59.79%), Postives = 67/97 (69.07%), Query Frame = 1 

Query: 45  IRQFIACEIKNIENSFQWTVESVPG-TDSFCSIQKSASTSISIPTTTAS-----LELTPK 104
           I+  IACEIKN ENS+ WT+ESVPG TDSFCSIQ SASTS SIP  TAS     LELT K
Sbjct: 40  IKNRIACEIKNFENSYHWTIESVPGTTDSFCSIQNSASTSTSIPMATASAAIAALELTSK 99

Query: 105 TDAKKICLL---RDEDSSQKISAESDGIEPRDGLWSR 133
            DAKKICL      +  ++KI+ ESDGI+ R   W +
Sbjct: 100 NDAKKICLFFCPETKALAEKIADESDGIDLRSISWRK 136

[Close]
BLAST of CmoCh04G018480 vs. NCBI nr
Match: gi|659090733|ref|XP_008446171.1| (PREDICTED: ribose-phosphate pyrophosphokinase 4-like [Cucumis melo])

HSP 1 Score: 95.5 bits (236), Expect = 9.3e-17
Identity = 62/125 (49.60%), Postives = 75/125 (60.00%), Query Frame = 1 

Query: 20  KNQRQSRESHPGKSLPSFS---VLKPKHIRQFIACEIKNIENSFQWTVESVPG-TDSFCS 79
           KN     +S    S   FS    +    I+  IACEIKN EN++QWT+ESVPG TDSFCS
Sbjct: 12  KNPNTLLDSSRNSSSVPFSRTYAIGDSKIKNRIACEIKNFENTYQWTIESVPGTTDSFCS 71

Query: 80  IQKSASTSISIPTTTAS-----LELTPKTDAKKICLL---RDEDSSQKISAESDGIEPRD 133
           IQ SAS S S+P   AS     LELT KTDAKKICL      +  ++KI+ ESDGI+ R 
Sbjct: 72  IQNSASISTSVPMAAASAAVAALELTSKTDAKKICLFFCPETKTLAEKIADESDGIDLRS 131

[Close]
BLAST of CmoCh04G018480 vs. NCBI nr
Match: gi|659090619|ref|XP_008446110.1| (PREDICTED: ribose-phosphate pyrophosphokinase 3, mitochondrial-like [Cucumis melo])

HSP 1 Score: 92.0 bits (227), Expect = 1.0e-15
Identity = 55/96 (57.29%), Postives = 65/96 (67.71%), Query Frame = 1 

Query: 45  IRQFIACEIKNIENSFQWTVESVPG-TDSFCSIQKSASTSISIPTTTAS-----LELTPK 104
           I+  IACEIKN EN++QWT+ESVPG TDSFCSIQ SAS S S+P   AS     LELT K
Sbjct: 40  IKNRIACEIKNFENTYQWTIESVPGTTDSFCSIQNSASISTSVPMAAASAAVAALELTSK 99

Query: 105 TDAKKICLLRDED----SSQKISAESDGIEPRDGLW 131
           TDAKKICL    +    + + I+ ESDGI+ R   W
Sbjct: 100 TDAKKICLFFCPETKTLAEKLIADESDGIDLRSISW 135

The following BLAST results are available for this feature:
BLAST of CmoCh04G018480 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh04G018480 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KQ59_CUCSA7.7e-1859.79Uncharacterized protein OS=Cucumis sativus GN=Csa_5G598760 PE=4 SV=1[more]
BLAST of CmoCh04G018480 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh04G018480 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449434967|ref|XP_004135267.1|1.1e-1759.79PREDICTED: ribose-phosphate pyrophosphokinase 3, mitochondrial [Cucumis sativus][more]
gi|659090733|ref|XP_008446171.1|9.3e-1749.60PREDICTED: ribose-phosphate pyrophosphokinase 4-like [Cucumis melo][more]
gi|659090619|ref|XP_008446110.1|1.0e-1557.29PREDICTED: ribose-phosphate pyrophosphokinase 3, mitochondrial-like [Cucumis mel... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G018480.1CmoCh04G018480.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh04G018480Cucumber (Gy14) v2cgybcmoB232
CmoCh04G018480Cucumber (Gy14) v2cgybcmoB653
CmoCh04G018480Melon (DHL92) v3.6.1cmomedB721
CmoCh04G018480Melon (DHL92) v3.6.1cmomedB761
CmoCh04G018480Silver-seed gourdcarcmoB0343
CmoCh04G018480Silver-seed gourdcarcmoB0685
CmoCh04G018480Silver-seed gourdcarcmoB0858
CmoCh04G018480Silver-seed gourdcarcmoB0985
CmoCh04G018480Cucumber (Chinese Long) v3cmocucB0808
CmoCh04G018480Cucumber (Chinese Long) v3cmocucB0875
CmoCh04G018480Watermelon (97103) v2cmowmbB730
CmoCh04G018480Watermelon (97103) v2cmowmbB763
CmoCh04G018480Wax gourdcmowgoB0861
CmoCh04G018480Wax gourdcmowgoB0890
CmoCh04G018480Cucurbita moschata (Rifu)cmocmoB341
CmoCh04G018480Cucurbita moschata (Rifu)cmocmoB472
CmoCh04G018480Cucumber (Gy14) v1cgycmoB0794
CmoCh04G018480Cucumber (Gy14) v1cgycmoB1092
CmoCh04G018480Cucurbita maxima (Rimu)cmacmoB189
CmoCh04G018480Cucurbita maxima (Rimu)cmacmoB422
CmoCh04G018480Cucurbita maxima (Rimu)cmacmoB728
CmoCh04G018480Cucurbita maxima (Rimu)cmacmoB785
CmoCh04G018480Wild cucumber (PI 183967)cmocpiB693
CmoCh04G018480Wild cucumber (PI 183967)cmocpiB748
CmoCh04G018480Cucumber (Chinese Long) v2cmocuB682
CmoCh04G018480Cucumber (Chinese Long) v2cmocuB739
CmoCh04G018480Melon (DHL92) v3.5.1cmomeB632
CmoCh04G018480Melon (DHL92) v3.5.1cmomeB673
CmoCh04G018480Watermelon (Charleston Gray)cmowcgB655
CmoCh04G018480Watermelon (Charleston Gray)cmowcgB683
CmoCh04G018480Watermelon (97103) v1cmowmB666
CmoCh04G018480Watermelon (97103) v1cmowmB694
CmoCh04G018480Cucurbita pepo (Zucchini)cmocpeB646
CmoCh04G018480Cucurbita pepo (Zucchini)cmocpeB656
CmoCh04G018480Cucurbita pepo (Zucchini)cmocpeB673
CmoCh04G018480Bottle gourd (USVL1VR-Ls)cmolsiB661
CmoCh04G018480Bottle gourd (USVL1VR-Ls)cmolsiB698