CmoCh04G017530.1 (mRNA) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G017530.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	RanBP2-type zinc finger protein
Location	Cmo_Chr04 : 8848907 .. 8850970 (-)
Sequence length	812

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCTTCATGAAAGGAGACTTGCTAACTAGGACTAGAAAGCTCGTCAAGGGCTTGGCCAAAGCAGAACCTATTTGGCTCAAAGCCATGGAACAGTCAGTTCTTCTATTCCTCACTCCTCGTACTTTTGCCTTTTTAAGAGTATTTCATTTTCTAGGATCCTGAAAATGTTCAATTTTTTGTTCTAGCTTGTCAAAATAAATTTGATGATCTTTTGGTCTTATCTTCAAATTTCTTTTTTCTTAGATTTGTGTAACTTTTTGGGATACTATTGGATTCAAGTTTCTCAATTTATCATGTCTATGACATCTTTTTTGGTGAAATATTTCACAGCAGTTTTCTTTTCATTGAATTAAATGATTTTAAACTGCTTATTGAGATAAATTTCTTTGGAAGGACTGAAAGTTTTGGGATTTTTTTTCCTGTTGTTTCCTGCTCATGAGTTGAGCATATTGCTTGGTAGCAATGGATGCATAAAAAGTTGGGTTTCCAGTTAGCTTCCAATTGCTTGAAACAATTATCTTATCCATTACACTCTTGTTCAGGGCGCCACCTCCTACATTTCCTCGAATAGATGGAACAATCAAGACAATCACTCTTCCTGAGGATGTATATGTAAAAAAGTTCTTCCAGAAACATCCAGATTCAAAATACGAAGATGCGATCAAGTATGATGCTTCTCTTATATATGTAGTTTATCACATTTTACTCCATCATACATGTTTGAAATGAGGGATTGATTCCATTGTTCGAGAGCTACTTTTCTGCATTGAAGTAAAATTAGATTCTCAGGTTTTCAGATTCTTGTGGAACTTCTATCTTAAGGGTTTGGAGTGCACATGACGTAGAAAACTCTTGTTGGATATTCATGAATTAAAATTCCATATGCCTGCTGCTGAGGCTTGCCATGGGTTGTTGTATGTCTGTCTGGGTCGTGCATTTAACCAATGTTCAACTATAATGAGGAATTTCAAGCAATGTTAATTCTTCTGAAGGCCTATCATAATTGTAGTGAAGCCACTTCTAACGGCTACTTCCTGTTAAATGGTATATCTGTTGGCTTCTAGAATCAATCACTAGAGACATGCTTGGCTTAAAATAGATCAGCTGATAAAAAATGTTCCCGATGACACTTGCATTTTGGGAAGGATGGTGAATTGAGTTTGTCATTTGTCGTGCATGCTCTCAGAATTTGCCTTCTTCTTTGGGATAGAATCTCTAAAAGACATCAGCATTGCTAAAATAGATGGTTCAATTGAAGCATACATATATATATGTATGTATGTGTAGAGTTATATCTTGCATGGATGAAATCCTGATATAGAAGGATGTAAAAAAACAGAGAAAAAAAGAGAGAGAAAGTTCCTAAGTAGTTGTCTTTTGTTTCTACAGGTTCTGTAGTTTCGATCCTCCTCCAGCCCGAATATTCGGCCTGCGAGTGCTTGAACTGAAGGAACAGGGTGTCAGTGAGGAGGAAGCCATGGCAGTAGCCAATGTAAGGATTGTGGGTTCTTTTATTTGTTTCCTTCTCTTGAATCTCTTCATTTTGTGAATAACGCCTTTTGTCATTCAGATGGAATACCGGGCAGAGAAAAAGGCGAAAAAGAAGGCTTACTCTCGCTTGAAGCAAATTGCACGTCTTCAAGGGAAGAAACCTCCTCCTAACCCATATCCAAGCGCTATTAAGGAGATACAAGCCGAGGAAAGGAAATTCGTGCGGGATCGTTTCTTCAACCCGAAGATTAAAGAGATCGCTCAAAGGTTGAAGGAGGAGAGAGCAGCTGAAATGCAGGACAGAATGAGAGGCAGTGGCTGGTCATGAAGAGTTGTTTAATTTATACGACTTCCAACCTCCCATCTTTCTTCTCGCTCTGCTCTGGAAACTAGCTTTTGCAATAATTTTGGCAATTGGCTAAATAGGGAACGACACATTTTTTTAGATTCAAGTGACTACTACATCTGAAGCATTGGATCAAGCATGTTAAAGGATTTTTCTTTCGATGTTATTCGGGTCTGATGTTATTCGGGTCTTGGATTAATAATAGAACGATTCAAAAGCATAAA

mRNA sequence

ATGTCCTTCATGAAAGGAGACTTGCTAACTAGGACTAGAAAGCTCGTCAAGGGCTTGGCCAAAGCAGAACCTATTTGGCTCAAAGCCATGGAACAGGCGCCACCTCCTACATTTCCTCGAATAGATGGAACAATCAAGACAATCACTCTTCCTGAGGATGTATATGTAAAAAAGTTCTTCCAGAAACATCCAGATTCAAAATACGAAGATGCGATCAAGTTCTGTAGTTTCGATCCTCCTCCAGCCCGAATATTCGGCCTGCGAGTGCTTGAACTGAAGGAACAGGGTGTCAGTGAGGAGGAAGCCATGGCAGTAGCCAATATGGAATACCGGGCAGAGAAAAAGGCGAAAAAGAAGGCTTACTCTCGCTTGAAGCAAATTGCACGTCTTCAAGGGAAGAAACCTCCTCCTAACCCATATCCAAGCGCTATTAAGGAGATACAAGCCGAGGAAAGGAAATTCGTGCGGGATCGTTTCTTCAACCCGAAGATTAAAGAGATCGCTCAAAGGTTGAAGGAGGAGAGAGCAGCTGAAATGCAGGACAGAATGAGAGGCAGTGGCTGGTCATGAAGAGTTGTTTAATTTATACGACTTCCAACCTCCCATCTTTCTTCTCGCTCTGCTCTGGAAACTAGCTTTTGCAATAATTTTGGCAATTGGCTAAATAGGGAACGACACATTTTTTTAGATTCAAGTGACTACTACATCTGAAGCATTGGATCAAGCATGTTAAAGGATTTTTCTTTCGATGTTATTCGGGTCTGATGTTATTCGGGTCTTGGATTAATAATAGAACGATTCAAAAGCATAAA

Coding sequence (CDS)

ATGTCCTTCATGAAAGGAGACTTGCTAACTAGGACTAGAAAGCTCGTCAAGGGCTTGGCCAAAGCAGAACCTATTTGGCTCAAAGCCATGGAACAGGCGCCACCTCCTACATTTCCTCGAATAGATGGAACAATCAAGACAATCACTCTTCCTGAGGATGTATATGTAAAAAAGTTCTTCCAGAAACATCCAGATTCAAAATACGAAGATGCGATCAAGTTCTGTAGTTTCGATCCTCCTCCAGCCCGAATATTCGGCCTGCGAGTGCTTGAACTGAAGGAACAGGGTGTCAGTGAGGAGGAAGCCATGGCAGTAGCCAATATGGAATACCGGGCAGAGAAAAAGGCGAAAAAGAAGGCTTACTCTCGCTTGAAGCAAATTGCACGTCTTCAAGGGAAGAAACCTCCTCCTAACCCATATCCAAGCGCTATTAAGGAGATACAAGCCGAGGAAAGGAAATTCGTGCGGGATCGTTTCTTCAACCCGAAGATTAAAGAGATCGCTCAAAGGTTGAAGGAGGAGAGAGCAGCTGAAATGCAGGACAGAATGAGAGGCAGTGGCTGGTCATGA

Homology

[Close]

BLAST of CmoCh04G017530.1 vs. TrEMBL
Match: A0A0A0KQQ3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G606340 PE=4 SV=1)

HSP 1 Score: 327.0 bits (837), Expect = 1.5e-86
Identity = 165/185 (89.19%), Postives = 174/185 (94.05%), Query Frame = 1


Query: 1   MSFMKGDLLTRTRKLVKGLAKAEPIWLKAMEQAPPPTFPRIDGTIKTITLPEDVYVKKFF 60
           MSFMKGDLLT+TRKLVKGLAKAEP+WLKAMEQAPPP+FPR+DGTIKTITLPEDVYVKKFF
Sbjct: 1   MSFMKGDLLTKTRKLVKGLAKAEPVWLKAMEQAPPPSFPRVDGTIKTITLPEDVYVKKFF 60

Query: 61  QKHPDSKYEDAIKFCSFDPPPARIFGLRVLELKEQGVSEEEAMAVANMEYRAEKKAKKKA 120
           +KHPDS Y DAIKFC F+PPPARIF  RVLELKEQGV+EEEAM VANMEYRAEKK KK A
Sbjct: 61  KKHPDSYYHDAIKFCGFNPPPARIFAWRVLELKEQGVNEEEAMTVANMEYRAEKKMKKNA 120

Query: 121 YSRLKQIARLQGKKPPPNPYPSAIKEIQAEERKFVRDRFFNPKIKEIAQRLKEERAAEMQ 180
           YSRLKQIARLQGKKPP NPYPSAIKEIQAEERKFVRDRFF+PKIKEIAQRLKEERAAEMQ
Sbjct: 121 YSRLKQIARLQGKKPPRNPYPSAIKEIQAEERKFVRDRFFDPKIKEIAQRLKEERAAEMQ 180

Query: 181 DRMRG 186
           +R  G
Sbjct: 181 ERTGG 185

[Close]

BLAST of CmoCh04G017530.1 vs. TrEMBL
Match: D7UBH7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0261g00010 PE=4 SV=1)

HSP 1 Score: 317.4 bits (812), Expect = 1.2e-83
Identity = 156/188 (82.98%), Postives = 174/188 (92.55%), Query Frame = 1


Query: 1   MSFMKGDLLTRTRKLVKGLAKAEPIWLKAMEQAPPPTFPRIDGTIKTITLPEDVYVKKFF 60
           MSFMKGDLL RTRKLVKGLAKAEP+WLKAME+APPPTFPR DG +K I+LPED Y++KFF
Sbjct: 1   MSFMKGDLLARTRKLVKGLAKAEPVWLKAMERAPPPTFPRPDGKVKKISLPEDFYIQKFF 60

Query: 61  QKHPDSKYEDAIKFCSFDPPPARIFGLRVLELKEQGVSEEEAMAVANMEYRAEKKAKKKA 120
           QKHPDSKYEDAIK  +F+PPPAR+FG RVLELKEQGVSEEEAMAVA+MEYRAEKKAKK A
Sbjct: 61  QKHPDSKYEDAIKISAFNPPPARVFGCRVLELKEQGVSEEEAMAVADMEYRAEKKAKKMA 120

Query: 121 YSRLKQIARLQGKKPPPNPYPSAIKEIQAEERKFVRDRFFNPKIKEIAQRLKEERAAEMQ 180
           Y+RLKQIARLQGK+ PPNPYPSAIKEIQAEERK+VRDRFFNPKI +I +++KEE+AA MQ
Sbjct: 121 YARLKQIARLQGKRLPPNPYPSAIKEIQAEERKYVRDRFFNPKILKIVEKMKEEKAAAMQ 180

Query: 181 DRMRGSGW 189
           DRMRG GW
Sbjct: 181 DRMRGGGW 188

[Close]

BLAST of CmoCh04G017530.1 vs. TrEMBL
Match: A5BWQ2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_039509 PE=4 SV=1)

HSP 1 Score: 308.5 bits (789), Expect = 5.5e-81
Identity = 153/185 (82.70%), Postives = 171/185 (92.43%), Query Frame = 1


Query: 1   MSFMKGDLLTRTRKLVKGLAKAEPIWLKAMEQAPPPTFPRIDGTIKTITLPEDVYVKKFF 60
           MSFMKGDLL RTRKLVKGLAKAEP+WLKAME+APPPTFPR DG +K I+LPED Y++KFF
Sbjct: 1   MSFMKGDLLARTRKLVKGLAKAEPVWLKAMERAPPPTFPRPDGKVKKISLPEDFYIQKFF 60

Query: 61  QKHPDSKYEDAIKFCSFDPPPARIFGLRVLELKEQGVSEEEAMAVANMEYRAEKKAKKKA 120
           QKHPDSKYEDAIK  +F+PPPAR+FG RVLELKEQGVSEEEAMAVA+MEYRAEKKAKK A
Sbjct: 61  QKHPDSKYEDAIKISAFNPPPARVFGCRVLELKEQGVSEEEAMAVADMEYRAEKKAKKMA 120

Query: 121 YSRLKQIARLQGKKPPPNPYPSAIKEIQAEERKFVRDRFFNPKIKEIAQRLKEERAAEMQ 180
           Y+RLKQIA LQGK+ PPNPYPSAIKEIQAEERK+VRDRFFNPKI +I +++KEE+AA MQ
Sbjct: 121 YARLKQIAXLQGKRLPPNPYPSAIKEIQAEERKYVRDRFFNPKILKIVEKMKEEKAAAMQ 180

Query: 181 DRMRG 186
           DRMRG
Sbjct: 181 DRMRG 185

[Close]

BLAST of CmoCh04G017530.1 vs. TrEMBL
Match: D7T9W5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0011g00510 PE=4 SV=1)

HSP 1 Score: 306.6 bits (784), Expect = 2.1e-80
Identity = 150/188 (79.79%), Postives = 172/188 (91.49%), Query Frame = 1


Query: 1   MSFMKGDLLTRTRKLVKGLAKAEPIWLKAMEQAPPPTFPRIDGTIKTITLPEDVYVKKFF 60
           MS+MKGD+LTRTRKLVKGLAKAEP WLKAME+ PPPTFPR DG +K I+LPEDVY++KFF
Sbjct: 1   MSYMKGDMLTRTRKLVKGLAKAEPSWLKAMERVPPPTFPRPDGKVKKISLPEDVYIRKFF 60

Query: 61  QKHPDSKYEDAIKFCSFDPPPARIFGLRVLELKEQGVSEEEAMAVANMEYRAEKKAKKKA 120
            KHPDSK+EDAIK  +F+PPPAR+FG RVLELKE+GVSEEEAMAVA+MEYRAEKKAK+ A
Sbjct: 61  LKHPDSKHEDAIKMTAFNPPPARVFGCRVLELKEEGVSEEEAMAVADMEYRAEKKAKRMA 120

Query: 121 YSRLKQIARLQGKKPPPNPYPSAIKEIQAEERKFVRDRFFNPKIKEIAQRLKEERAAEMQ 180
           Y+RLKQI RLQGKK PPNPYPSAIKEIQAEERK+VRDRFF+PKI +I +++KEE+AA MQ
Sbjct: 121 YARLKQITRLQGKKLPPNPYPSAIKEIQAEERKYVRDRFFDPKILKIVEKMKEEKAAVMQ 180

Query: 181 DRMRGSGW 189
           DRMRG GW
Sbjct: 181 DRMRGGGW 188

[Close]

BLAST of CmoCh04G017530.1 vs. TrEMBL
Match: M5XDT5_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011996mg PE=4 SV=1)

HSP 1 Score: 305.8 bits (782), Expect = 3.6e-80
Identity = 154/189 (81.48%), Postives = 173/189 (91.53%), Query Frame = 1


Query: 1   MSFMKGDLLTRTRKLVKGLAKAEPIWLKAMEQAPPPTFPRIDGTIKTITLPEDVYVKKFF 60
           MSFMKGDLLTRTRKLVKGLAKAEP+WLKAME+ PP TFPR D  I+ ITLPEDVY+KKFF
Sbjct: 1   MSFMKGDLLTRTRKLVKGLAKAEPVWLKAMERVPPVTFPRADA-IQKITLPEDVYIKKFF 60

Query: 61  QKHPDSKYEDAIKFCSFDPPPARIFGLRVLELKEQGVSEEEAMAVANMEYRAEKKAKKKA 120
           QKHPDSK+EDAIKF +FDPPPARIFGLRVLELKEQGVSE+EAMAVA+MEYR E+K KK A
Sbjct: 61  QKHPDSKHEDAIKFSAFDPPPARIFGLRVLELKEQGVSEQEAMAVADMEYRMERKGKKMA 120

Query: 121 YSRLKQIARLQGKKPPPNPYPSAIKEIQAEERKFVRDRFFNPKIKEIAQRLKEERAAEMQ 180
           YSRLK+IARLQGKKPPPNPYPSAIKEIQAEE+K+VRDRFFNP+I++I ++L+EE AAE Q
Sbjct: 121 YSRLKKIARLQGKKPPPNPYPSAIKEIQAEEKKYVRDRFFNPRIRQILRKLQEEHAAERQ 180

Query: 181 DRMRGSGWS 190
           D +RG G S
Sbjct: 181 DGLRGEGGS 188

[Close]

BLAST of CmoCh04G017530.1 vs. TAIR10
Match: AT1G26750.1 (AT1G26750.1 unknown protein)

HSP 1 Score: 205.7 bits (522), Expect = 2.5e-53
Identity = 102/186 (54.84%), Postives = 134/186 (72.04%), Query Frame = 1


Query: 1   MSFMKGDLLTRTRKLVKGLAKAEPIWLKAMEQAPPPTFPRIDGTIKTITLPEDVYVKKFF 60
           MS+MKGDLL++TR+LV GLA  EP+WLKAME +PPP FPR +G I+ I LPED YV+KF 
Sbjct: 1   MSWMKGDLLSKTRRLVGGLATREPVWLKAMEASPPPVFPRSNGKIQKIVLPEDPYVRKFA 60

Query: 61  QKHPDSKYEDAIKFCSFDPPPARIFGLRVLELKEQGVSEEEAMAVANMEYRAEKKAKKKA 120
            KHP +K +D  K  +F P  AR++G RVLELKE G+SE +AM+VANMEY +E+K  KKA
Sbjct: 61  NKHPGTKIDDPAKISAFIPDQARVYGCRVLELKEHGISEGDAMSVANMEYLSERKEMKKA 120

Query: 121 YSRLKQIARLQGKKPPPNPYPSAIKEIQAEERKFVRDRFFNPKIKEIAQRLKEERAAEMQ 180
           Y RLK++A +Q K PPP PYPSA K +  + +   +DRF  P ++ +  +LK E+   +Q
Sbjct: 121 YKRLKELAVMQDKDPPPKPYPSAKKGLITQSKTSAKDRFQTPSVRRLVNQLKNEKDVLLQ 180

Query: 181 DRMRGS 187
           DR  GS
Sbjct: 181 DRTGGS 186

[Close]

BLAST of CmoCh04G017530.1 vs. NCBI nr
Match: gi|449434772|ref|XP_004135170.1| (PREDICTED: uncharacterized protein LOC101217717 [Cucumis sativus])

HSP 1 Score: 327.0 bits (837), Expect = 2.1e-86
Identity = 165/185 (89.19%), Postives = 174/185 (94.05%), Query Frame = 1


Query: 1   MSFMKGDLLTRTRKLVKGLAKAEPIWLKAMEQAPPPTFPRIDGTIKTITLPEDVYVKKFF 60
           MSFMKGDLLT+TRKLVKGLAKAEP+WLKAMEQAPPP+FPR+DGTIKTITLPEDVYVKKFF
Sbjct: 1   MSFMKGDLLTKTRKLVKGLAKAEPVWLKAMEQAPPPSFPRVDGTIKTITLPEDVYVKKFF 60

Query: 61  QKHPDSKYEDAIKFCSFDPPPARIFGLRVLELKEQGVSEEEAMAVANMEYRAEKKAKKKA 120
           +KHPDS Y DAIKFC F+PPPARIF  RVLELKEQGV+EEEAM VANMEYRAEKK KK A
Sbjct: 61  KKHPDSYYHDAIKFCGFNPPPARIFAWRVLELKEQGVNEEEAMTVANMEYRAEKKMKKNA 120

Query: 121 YSRLKQIARLQGKKPPPNPYPSAIKEIQAEERKFVRDRFFNPKIKEIAQRLKEERAAEMQ 180
           YSRLKQIARLQGKKPP NPYPSAIKEIQAEERKFVRDRFF+PKIKEIAQRLKEERAAEMQ
Sbjct: 121 YSRLKQIARLQGKKPPRNPYPSAIKEIQAEERKFVRDRFFDPKIKEIAQRLKEERAAEMQ 180

Query: 181 DRMRG 186
           +R  G
Sbjct: 181 ERTGG 185

[Close]

BLAST of CmoCh04G017530.1 vs. NCBI nr
Match: gi|659091137|ref|XP_008446390.1| (PREDICTED: uncharacterized protein LOC103489146 [Cucumis melo])

HSP 1 Score: 324.7 bits (831), Expect = 1.1e-85
Identity = 164/188 (87.23%), Postives = 175/188 (93.09%), Query Frame = 1


Query: 1   MSFMKGDLLTRTRKLVKGLAKAEPIWLKAMEQAPPPTFPRIDGTIKTITLPEDVYVKKFF 60
           MSFMKGDLLT+TRKLVKGLAKAEP+WLKAMEQAPPPTFPR+DG ++ ITLPEDVYVKKFF
Sbjct: 1   MSFMKGDLLTKTRKLVKGLAKAEPVWLKAMEQAPPPTFPRVDGKVQKITLPEDVYVKKFF 60

Query: 61  QKHPDSKYEDAIKFCSFDPPPARIFGLRVLELKEQGVSEEEAMAVANMEYRAEKKAKKKA 120
           QKHPDS Y DAIKF  F+P PARIF  RVLELKEQGVSEEEAMA ANMEYRAEKK KKKA
Sbjct: 61  QKHPDSAYHDAIKFLDFNPVPARIFAWRVLELKEQGVSEEEAMAAANMEYRAEKKMKKKA 120

Query: 121 YSRLKQIARLQGKKPPPNPYPSAIKEIQAEERKFVRDRFFNPKIKEIAQRLKEERAAEMQ 180
           YSRLKQIARLQGKKPPPNP+PSAIK+IQAEERK+VRDRFFNPKIKEIAQRLKEE+AAEMQ
Sbjct: 121 YSRLKQIARLQGKKPPPNPFPSAIKQIQAEERKYVRDRFFNPKIKEIAQRLKEEKAAEMQ 180

Query: 181 DRMRGSGW 189
           +R RG GW
Sbjct: 181 ERKRG-GW 187

[Close]

BLAST of CmoCh04G017530.1 vs. NCBI nr
Match: gi|225462908|ref|XP_002264571.1| (PREDICTED: uncharacterized protein LOC100267719 [Vitis vinifera])

HSP 1 Score: 317.4 bits (812), Expect = 1.7e-83
Identity = 156/188 (82.98%), Postives = 174/188 (92.55%), Query Frame = 1


Query: 1   MSFMKGDLLTRTRKLVKGLAKAEPIWLKAMEQAPPPTFPRIDGTIKTITLPEDVYVKKFF 60
           MSFMKGDLL RTRKLVKGLAKAEP+WLKAME+APPPTFPR DG +K I+LPED Y++KFF
Sbjct: 1   MSFMKGDLLARTRKLVKGLAKAEPVWLKAMERAPPPTFPRPDGKVKKISLPEDFYIQKFF 60

Query: 61  QKHPDSKYEDAIKFCSFDPPPARIFGLRVLELKEQGVSEEEAMAVANMEYRAEKKAKKKA 120
           QKHPDSKYEDAIK  +F+PPPAR+FG RVLELKEQGVSEEEAMAVA+MEYRAEKKAKK A
Sbjct: 61  QKHPDSKYEDAIKISAFNPPPARVFGCRVLELKEQGVSEEEAMAVADMEYRAEKKAKKMA 120

Query: 121 YSRLKQIARLQGKKPPPNPYPSAIKEIQAEERKFVRDRFFNPKIKEIAQRLKEERAAEMQ 180
           Y+RLKQIARLQGK+ PPNPYPSAIKEIQAEERK+VRDRFFNPKI +I +++KEE+AA MQ
Sbjct: 121 YARLKQIARLQGKRLPPNPYPSAIKEIQAEERKYVRDRFFNPKILKIVEKMKEEKAAAMQ 180

Query: 181 DRMRGSGW 189
           DRMRG GW
Sbjct: 181 DRMRGGGW 188

[Close]

BLAST of CmoCh04G017530.1 vs. NCBI nr
Match: gi|147816504|emb|CAN72786.1| (hypothetical protein VITISV_039509 [Vitis vinifera])

HSP 1 Score: 308.5 bits (789), Expect = 7.9e-81
Identity = 153/185 (82.70%), Postives = 171/185 (92.43%), Query Frame = 1


Query: 1   MSFMKGDLLTRTRKLVKGLAKAEPIWLKAMEQAPPPTFPRIDGTIKTITLPEDVYVKKFF 60
           MSFMKGDLL RTRKLVKGLAKAEP+WLKAME+APPPTFPR DG +K I+LPED Y++KFF
Sbjct: 1   MSFMKGDLLARTRKLVKGLAKAEPVWLKAMERAPPPTFPRPDGKVKKISLPEDFYIQKFF 60

Query: 61  QKHPDSKYEDAIKFCSFDPPPARIFGLRVLELKEQGVSEEEAMAVANMEYRAEKKAKKKA 120
           QKHPDSKYEDAIK  +F+PPPAR+FG RVLELKEQGVSEEEAMAVA+MEYRAEKKAKK A
Sbjct: 61  QKHPDSKYEDAIKISAFNPPPARVFGCRVLELKEQGVSEEEAMAVADMEYRAEKKAKKMA 120

Query: 121 YSRLKQIARLQGKKPPPNPYPSAIKEIQAEERKFVRDRFFNPKIKEIAQRLKEERAAEMQ 180
           Y+RLKQIA LQGK+ PPNPYPSAIKEIQAEERK+VRDRFFNPKI +I +++KEE+AA MQ
Sbjct: 121 YARLKQIAXLQGKRLPPNPYPSAIKEIQAEERKYVRDRFFNPKILKIVEKMKEEKAAAMQ 180

Query: 181 DRMRG 186
           DRMRG
Sbjct: 181 DRMRG 185

[Close]

BLAST of CmoCh04G017530.1 vs. NCBI nr
Match: gi|645254106|ref|XP_008232884.1| (PREDICTED: uncharacterized protein LOC103331976 [Prunus mume])

HSP 1 Score: 308.5 bits (789), Expect = 7.9e-81
Identity = 155/189 (82.01%), Postives = 174/189 (92.06%), Query Frame = 1


Query: 1   MSFMKGDLLTRTRKLVKGLAKAEPIWLKAMEQAPPPTFPRIDGTIKTITLPEDVYVKKFF 60
           MSFMKGDLLTRTRKLVKGLAKAEP+WLKAME+ PP TFPR D  I+ ITLPEDVY+KKFF
Sbjct: 1   MSFMKGDLLTRTRKLVKGLAKAEPVWLKAMERVPPVTFPRADA-IQKITLPEDVYIKKFF 60

Query: 61  QKHPDSKYEDAIKFCSFDPPPARIFGLRVLELKEQGVSEEEAMAVANMEYRAEKKAKKKA 120
           QKHPDSK+EDAIKF +FDPPPARIFGLRVLELKEQGVSE+EAMAVA+MEYR E+K KK A
Sbjct: 61  QKHPDSKHEDAIKFSAFDPPPARIFGLRVLELKEQGVSEQEAMAVADMEYRMERKGKKMA 120

Query: 121 YSRLKQIARLQGKKPPPNPYPSAIKEIQAEERKFVRDRFFNPKIKEIAQRLKEERAAEMQ 180
           YSRLK+IARLQGKKPPPNPYPSAIKEIQAEE+K+VRDRFFNP+I++I ++L+EE AAE Q
Sbjct: 121 YSRLKKIARLQGKKPPPNPYPSAIKEIQAEEKKYVRDRFFNPRIRQILRKLQEEHAAERQ 180

Query: 181 DRMRGSGWS 190
           DR+RG G S
Sbjct: 181 DRLRGEGGS 188

The following BLAST results are available for this feature:

BLAST of CmoCh04G017530.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh04G017530.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KQQ3_CUCSA	1.5e-86	89.19	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G606340 PE=4 SV=1	[more]
D7UBH7_VITVI	1.2e-83	82.98	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0261g00010 PE=4 SV=...	[more]
A5BWQ2_VITVI	5.5e-81	82.70	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_039509 PE=4 SV=1	[more]
D7T9W5_VITVI	2.1e-80	79.79	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0011g00510 PE=4 SV=...	[more]
M5XDT5_PRUPE	3.6e-80	81.48	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011996mg PE=4 SV=1	[more]

BLAST of CmoCh04G017530.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G26750.1	2.5e-53	54.84	unknown protein	[more]

BLAST of CmoCh04G017530.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449434772\|ref\|XP_004135170.1\|	2.1e-86	89.19	PREDICTED: uncharacterized protein LOC101217717 [Cucumis sativus]	[more]
gi\|659091137\|ref\|XP_008446390.1\|	1.1e-85	87.23	PREDICTED: uncharacterized protein LOC103489146 [Cucumis melo]	[more]
gi\|225462908\|ref\|XP_002264571.1\|	1.7e-83	82.98	PREDICTED: uncharacterized protein LOC100267719 [Vitis vinifera]	[more]
gi\|147816504\|emb\|CAN72786.1\|	7.9e-81	82.70	hypothetical protein VITISV_039509 [Vitis vinifera]	[more]
gi\|645254106\|ref\|XP_008232884.1\|	7.9e-81	82.01	PREDICTED: uncharacterized protein LOC103331976 [Prunus mume]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh04G017530	CmoCh04G017530	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh04G017530.1	CmoCh04G017530.1-protein	polypeptide

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh04G017530.1.three_prime_UTR.1	CmoCh04G017530.1.three_prime_UTR.1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh04G017530.1.CDS.4	CmoCh04G017530.1.CDS.4	CDS
CmoCh04G017530.1.CDS.3	CmoCh04G017530.1.CDS.3	CDS
CmoCh04G017530.1.CDS.2	CmoCh04G017530.1.CDS.2	CDS
CmoCh04G017530.1.CDS.1	CmoCh04G017530.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh04G017530.1.exon.4	CmoCh04G017530.1.exon.4	exon
CmoCh04G017530.1.exon.3	CmoCh04G017530.1.exon.3	exon
CmoCh04G017530.1.exon.2	CmoCh04G017530.1.exon.2	exon
CmoCh04G017530.1.exon.1	CmoCh04G017530.1.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35693	FAMILY NOT NAMED	coord: 2..189 score: 4.2
None	No IPR available	PANTHER	PTHR35693:SF1	SUBFAMILY NOT NAMED	coord: 2..189 score: 4.2