CmoCh04G015820.1 (mRNA) Cucurbita moschata (Rifu)

Overview
NameCmoCh04G015820.1
TypemRNA
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr04 : 8079101 .. 8081999 (-)
Sequence length612
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ACAAGACGTCCTGCAGTTTTCCTTCCCTCGCTCACTCGTCTTTCTGTCTACGGAGGATTTTCAGAAAATCAACTTCCACGCCTAGTTCTTCAACGAGTTCCACCATCCATTCTTAATATCCTCTGTGGACCTGTTTTATTTTTCCTTCCAATGACAAGAGCTCAACTCAAAGAACAGGCAGATGCCAGTCTTGAGATAATTTCCATCGGATCATTGTACAGTGGACACATTGGGACAAGAAGTACTGGAGCAGCTCTAGGGTTTGTATTCGATTTATTTTGCCCTGCATATTCTGATCTATATGTCTGCTGTAATTGATTCCATTTATCGCGGTGGTGATGTTGCTATTTCCGATTATATTTTTCTATGTTTATTTGATAGTTTGCCTATCACCTCAAGTGGAAAGCATGTGATGCTTGTAACATAGTTTGTTCCCTTTGGAATTCTGTTCTGTATTTTTCGACTTGGTTGCTTTGAAAAGATTTCTTTTCTGATAATTGGTTGTTTTGAAGCGATTGCAAGCTTATCTAGGTAGGTTTTGCGATCTAGAATTGGTAAAAATTAGTTGATCCCAATTTGCAAGTAAAATCAGATTGTCTACTTCATGAAGCTTATCTGATAAATTAATTTTGAGTAGTGCGAATTTGTTGTAAATTGGATTTGGTATTAATGCACAGTAAATTCCATTTAGTGTCACCGCAATCTTCAGGAGAGTCAAATATCCAGAGTTCCAATATCCAGGGAAACTTTGGACCAATTGACGAATTTGTCAATTCGAACTGCTTGCTGAACTAATTACCATTTTTGTTATTTTTCGAGTGGTTGTTGTAGTTGCAAATTTAATATACCTGAAGAGGTGTTTTAGATCAAGAACAGTAAATGTCAAAGAGAGCTAGGAATATAGATTTTGGAGTTTCATGTGGTACTTTAAATGTGTTTTATGAATTATTTACTGATGGATAATTATGGAGTGACTTATTTGTTATCTAGGTGTGTCTATTTCAACTCTGCATTGTAGTAGAGATAAATCTGATATTGATGATTCCCATTATCTTTCTTTATAAGAGATTCTGCCATTAGAGCTTCAAGAAGTTAAGAAAAGATGCATTTACAGGATTCTAGATAAGAAATCTCAACCGAGGACCTACCGTAATCATTGCATTATTGTGTAGGGTAAAGATCGATTTCCCTATCCAGATGGGCAATCTGGCTGGTCTCCAAAGGGGCTTTTATTTATGGTGCGTATCACCTTCGTATTAAGTATTGAATATCTCTGTTTCTCGTGCCATTGGAAAATATTTATTGAAAGGTTACATCGTCCCTTGCAGATTTTGTCTATGGATGGACGTTCATTTTCAGAGGAGAGGCTGCCTCCTCACTACAATTTGGCACGGGAAACGCCTTCGTGCAAGGTTGATGGAGTGGAGGTATAACTGTTCTCTTTTAACCTACAGTCTGTTTGCTTCTTAGATTTGCATTTTTATACGGATCCCTTTAACCAGTGGAGTCAACCAGTAATAAACGAGTCCTATCATACTGTAACCTTTTTGAATTCCTTGCATTTTCTATGATCAGTAACTTACTCTGTGTCTCCTTTCCAAAATATCCTTCAACCATGCTACCTTTTTCATTCTTGATACCAACTTAGCTTTGAGTAAATGCTCAAGTGTCAAGTGAATTGGAGGGTAAAACTTAGTACTTTATCTTCTCAGTTTGAATATGTCACCACTGAGCAACTTCAATTTCACCAGTGAAATAGCACTCTTGTGTATCCGCACAAGAGGAATTGAATTCATGCAATCTTAAGGGCCATGGTTAACTTTCTACCTTCAATTTCACCAGTGAAAGTCACAATCAGTCTGAATTAGTTTCTTGCCATGAAAGATCGGAGTTTGCAAGAAAGAAAAGGAGGAATCATTGAATTGAAACGGAAAAGTTACTCAATTATGCTAATCTAAAAAAAGTAGGAAATTGTGGTTCAAGAATTAGATCCATGACCGAAAAACAGTCAAGCTCAGCGTCTGTCAATGAAGTGAATCAAGGTTTTTGTGGCATGTATGTGAAGATAGTTCCTTTACACACGCGAAAAGAAAAAAAAATAGCTCAGCAACTTCTTTGGCAGCAGTAGCAACGTCTACAGGAAAGGATAAAAAATTCATAAATTGCCAGCTAACTTTGCATCTCCAAGGTGTTTTTAACTACTTTGTTCATGCCTCAGAGAAAGCTATGTGCGTACAAGAGGATGCTGTATCTGAATCCCCTCAAGTAGCTCATAATGTGTCCATTGATGAAGAACTTATGAGAATTCACAATTAGCTTGTAATGGAAGCCATATAAACTTCCTTGTTTGCTTTTGTTATAAAGAGAAGTTTACATTTAAGCTCTATTCACATTTTCAATAGAAATATAGATGACGGAAACATGGATCATTTTGAGAAATGTGTTTTACACGCTGTTTGTCAGATTTACAAATTTGATTGTTGGAAGCGCTCTTAACTTCTTACAGCATGATAGGTTGTCAATGGACAAATTGGAAGCTATTAGTCGAGAAATGGAAACAGTGCAGATGCTTCTATCCAAAATTATTGTCCAGATACTGAAGACAATAATCATCATGCATCACATACTTCAGATCTATCACTTCTTTTTTTGGACAAAACATTGGTCCATTTATATAATTTTCTTTTTATTTCGATTTTTTTTATTATGCAGCTATTGTGAGTCTGCTCCTGGTAGCATGGAAAAGAAAAGTCTCAATCAGTCTGATATCGTCATATCTGAAGAGTCGGTGAACTCCCTCCAGAAGAAAATTTGCTCATTGAACACGGACTCAGGCTCCAAAAGAAATGATTTTGATTCATTAGGACAATACATTGTGAAGTCAATGATGATTTTTTGA

mRNA sequence

ACAAGACGTCCTGCAGTTTTCCTTCCCTCGCTCACTCGTCTTTCTGTCTACGGAGGATTTTCAGAAAATCAACTTCCACGCCTAGTTCTTCAACGAGTTCCACCATCCATTCTTAATATCCTCTGTGGACCTGTTTTATTTTTCCTTCCAATGACAAGAGCTCAACTCAAAGAACAGGCAGATGCCAGTCTTGAGATAATTTCCATCGGATCATTGTACAGTGGACACATTGGGACAAGAAGTACTGGAGCAGCTCTAGGGGTAAAGATCGATTTCCCTATCCAGATGGGCAATCTGGCTGGTCTCCAAAGGGGCTTTTATTTATGATTTTGTCTATGGATGGACGTTCATTTTCAGAGGAGAGGCTGCCTCCTCACTACAATTTGGCACGGGAAACGCCTTCGTGCAAGGTTGATGGAGTGGAGCTATTGTGAGTCTGCTCCTGGTAGCATGGAAAAGAAAAGTCTCAATCAGTCTGATATCGTCATATCTGAAGAGTCGGTGAACTCCCTCCAGAAGAAAATTTGCTCATTGAACACGGACTCAGGCTCCAAAAGAAATGATTTTGATTCATTAGGACAATACATTGTGAAGTCAATGATGATTTTTTGA

Coding sequence (CDS)

ATGGACGTTCATTTTCAGAGGAGAGGCTGCCTCCTCACTACAATTTGGCACGGGAAACGCCTTCGTGCAAGGTTGATGGAGTGGAGCTATTGTGAGTCTGCTCCTGGTAGCATGGAAAAGAAAAGTCTCAATCAGTCTGATATCGTCATATCTGAAGAGTCGGTGAACTCCCTCCAGAAGAAAATTTGCTCATTGAACACGGACTCAGGCTCCAAAAGAAATGATTTTGATTCATTAGGACAATACATTGTGAAGTCAATGATGATTTTTTGA
Homology
[Close]
BLAST of CmoCh04G015820.1 vs. TrEMBL
Match: A0A0A0KR62_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G609640 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 7.3e-07
Identity = 35/60 (58.33%), Postives = 45/60 (75.00%), Query Frame = 1 

Query: 32  ESAPGSMEKKSLNQSDIVISEESV-NSLQKKICSLNTDSGSKRNDFDSLGQYIVKSMMIF 91
           ESAP S EKK LNQ + +I EE V +S  ++I SL+T+ GS +NDFDS+GQ +VKSMM F
Sbjct: 314 ESAPVSTEKKILNQHEFIIPEELVMDSHSEEIFSLDTNLGSNKNDFDSVGQDMVKSMMTF 373

[Close]
BLAST of CmoCh04G015820.1 vs. NCBI nr
Match: gi|778705982|ref|XP_011655775.1| (PREDICTED: uncharacterized protein LOC101212926 [Cucumis sativus])

HSP 1 Score: 61.2 bits (147), Expect = 1.0e-06
Identity = 35/60 (58.33%), Postives = 45/60 (75.00%), Query Frame = 1 

Query: 32  ESAPGSMEKKSLNQSDIVISEESV-NSLQKKICSLNTDSGSKRNDFDSLGQYIVKSMMIF 91
           ESAP S EKK LNQ + +I EE V +S  ++I SL+T+ GS +NDFDS+GQ +VKSMM F
Sbjct: 314 ESAPVSTEKKILNQHEFIIPEELVMDSHSEEIFSLDTNLGSNKNDFDSVGQDMVKSMMTF 373

The following BLAST results are available for this feature:
BLAST of CmoCh04G015820.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh04G015820.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KR62_CUCSA7.3e-0758.33Uncharacterized protein OS=Cucumis sativus GN=Csa_5G609640 PE=4 SV=1[more]
BLAST of CmoCh04G015820.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh04G015820.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778705982|ref|XP_011655775.1|1.0e-0658.33PREDICTED: uncharacterized protein LOC101212926 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmoCh04G015820CmoCh04G015820gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmoCh04G015820.1CmoCh04G015820.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh04G015820.1.CDS.2CmoCh04G015820.1.CDS.2CDS
CmoCh04G015820.1.CDS.1CmoCh04G015820.1.CDS.1CDS


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh04G015820.1.five_prime_UTR.3CmoCh04G015820.1.five_prime_UTR.3five_prime_UTR
CmoCh04G015820.1.five_prime_UTR.2CmoCh04G015820.1.five_prime_UTR.2five_prime_UTR
CmoCh04G015820.1.five_prime_UTR.1CmoCh04G015820.1.five_prime_UTR.1five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh04G015820.1.exon.4CmoCh04G015820.1.exon.4exon
CmoCh04G015820.1.exon.3CmoCh04G015820.1.exon.3exon
CmoCh04G015820.1.exon.2CmoCh04G015820.1.exon.2exon
CmoCh04G015820.1.exon.1CmoCh04G015820.1.exon.1exon