CmoCh04G015820 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh04G015820
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr04 : 8079101 .. 8081999 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ACAAGACGTCCTGCAGTTTTCCTTCCCTCGCTCACTCGTCTTTCTGTCTACGGAGGATTTTCAGAAAATCAACTTCCACGCCTAGTTCTTCAACGAGTTCCACCATCCATTCTTAATATCCTCTGTGGACCTGTTTTATTTTTCCTTCCAATGACAAGAGCTCAACTCAAAGAACAGGCAGATGCCAGTCTTGAGATAATTTCCATCGGATCATTGTACAGTGGACACATTGGGACAAGAAGTACTGGAGCAGCTCTAGGGTTTGTATTCGATTTATTTTGCCCTGCATATTCTGATCTATATGTCTGCTGTAATTGATTCCATTTATCGCGGTGGTGATGTTGCTATTTCCGATTATATTTTTCTATGTTTATTTGATAGTTTGCCTATCACCTCAAGTGGAAAGCATGTGATGCTTGTAACATAGTTTGTTCCCTTTGGAATTCTGTTCTGTATTTTTCGACTTGGTTGCTTTGAAAAGATTTCTTTTCTGATAATTGGTTGTTTTGAAGCGATTGCAAGCTTATCTAGGTAGGTTTTGCGATCTAGAATTGGTAAAAATTAGTTGATCCCAATTTGCAAGTAAAATCAGATTGTCTACTTCATGAAGCTTATCTGATAAATTAATTTTGAGTAGTGCGAATTTGTTGTAAATTGGATTTGGTATTAATGCACAGTAAATTCCATTTAGTGTCACCGCAATCTTCAGGAGAGTCAAATATCCAGAGTTCCAATATCCAGGGAAACTTTGGACCAATTGACGAATTTGTCAATTCGAACTGCTTGCTGAACTAATTACCATTTTTGTTATTTTTCGAGTGGTTGTTGTAGTTGCAAATTTAATATACCTGAAGAGGTGTTTTAGATCAAGAACAGTAAATGTCAAAGAGAGCTAGGAATATAGATTTTGGAGTTTCATGTGGTACTTTAAATGTGTTTTATGAATTATTTACTGATGGATAATTATGGAGTGACTTATTTGTTATCTAGGTGTGTCTATTTCAACTCTGCATTGTAGTAGAGATAAATCTGATATTGATGATTCCCATTATCTTTCTTTATAAGAGATTCTGCCATTAGAGCTTCAAGAAGTTAAGAAAAGATGCATTTACAGGATTCTAGATAAGAAATCTCAACCGAGGACCTACCGTAATCATTGCATTATTGTGTAGGGTAAAGATCGATTTCCCTATCCAGATGGGCAATCTGGCTGGTCTCCAAAGGGGCTTTTATTTATGGTGCGTATCACCTTCGTATTAAGTATTGAATATCTCTGTTTCTCGTGCCATTGGAAAATATTTATTGAAAGGTTACATCGTCCCTTGCAGATTTTGTCTATGGATGGACGTTCATTTTCAGAGGAGAGGCTGCCTCCTCACTACAATTTGGCACGGGAAACGCCTTCGTGCAAGGTTGATGGAGTGGAGGTATAACTGTTCTCTTTTAACCTACAGTCTGTTTGCTTCTTAGATTTGCATTTTTATACGGATCCCTTTAACCAGTGGAGTCAACCAGTAATAAACGAGTCCTATCATACTGTAACCTTTTTGAATTCCTTGCATTTTCTATGATCAGTAACTTACTCTGTGTCTCCTTTCCAAAATATCCTTCAACCATGCTACCTTTTTCATTCTTGATACCAACTTAGCTTTGAGTAAATGCTCAAGTGTCAAGTGAATTGGAGGGTAAAACTTAGTACTTTATCTTCTCAGTTTGAATATGTCACCACTGAGCAACTTCAATTTCACCAGTGAAATAGCACTCTTGTGTATCCGCACAAGAGGAATTGAATTCATGCAATCTTAAGGGCCATGGTTAACTTTCTACCTTCAATTTCACCAGTGAAAGTCACAATCAGTCTGAATTAGTTTCTTGCCATGAAAGATCGGAGTTTGCAAGAAAGAAAAGGAGGAATCATTGAATTGAAACGGAAAAGTTACTCAATTATGCTAATCTAAAAAAAGTAGGAAATTGTGGTTCAAGAATTAGATCCATGACCGAAAAACAGTCAAGCTCAGCGTCTGTCAATGAAGTGAATCAAGGTTTTTGTGGCATGTATGTGAAGATAGTTCCTTTACACACGCGAAAAGAAAAAAAAATAGCTCAGCAACTTCTTTGGCAGCAGTAGCAACGTCTACAGGAAAGGATAAAAAATTCATAAATTGCCAGCTAACTTTGCATCTCCAAGGTGTTTTTAACTACTTTGTTCATGCCTCAGAGAAAGCTATGTGCGTACAAGAGGATGCTGTATCTGAATCCCCTCAAGTAGCTCATAATGTGTCCATTGATGAAGAACTTATGAGAATTCACAATTAGCTTGTAATGGAAGCCATATAAACTTCCTTGTTTGCTTTTGTTATAAAGAGAAGTTTACATTTAAGCTCTATTCACATTTTCAATAGAAATATAGATGACGGAAACATGGATCATTTTGAGAAATGTGTTTTACACGCTGTTTGTCAGATTTACAAATTTGATTGTTGGAAGCGCTCTTAACTTCTTACAGCATGATAGGTTGTCAATGGACAAATTGGAAGCTATTAGTCGAGAAATGGAAACAGTGCAGATGCTTCTATCCAAAATTATTGTCCAGATACTGAAGACAATAATCATCATGCATCACATACTTCAGATCTATCACTTCTTTTTTTGGACAAAACATTGGTCCATTTATATAATTTTCTTTTTATTTCGATTTTTTTTATTATGCAGCTATTGTGAGTCTGCTCCTGGTAGCATGGAAAAGAAAAGTCTCAATCAGTCTGATATCGTCATATCTGAAGAGTCGGTGAACTCCCTCCAGAAGAAAATTTGCTCATTGAACACGGACTCAGGCTCCAAAAGAAATGATTTTGATTCATTAGGACAATACATTGTGAAGTCAATGATGATTTTTTGA

mRNA sequence

ACAAGACGTCCTGCAGTTTTCCTTCCCTCGCTCACTCGTCTTTCTGTCTACGGAGGATTTTCAGAAAATCAACTTCCACGCCTAGTTCTTCAACGAGTTCCACCATCCATTCTTAATATCCTCTGTGGACCTGTTTTATTTTTCCTTCCAATGACAAGAGCTCAACTCAAAGAACAGGCAGATGCCAGTCTTGAGATAATTTCCATCGGATCATTGTACAGTGGACACATTGGGACAAGAAGTACTGGAGCAGCTCTAGGGGTAAAGATCGATTTCCCTATCCAGATGGGCAATCTGGCTGGTCTCCAAAGGGGCTTTTATTTATGATTTTGTCTATGGATGGACGTTCATTTTCAGAGGAGAGGCTGCCTCCTCACTACAATTTGGCACGGGAAACGCCTTCGTGCAAGGTTGATGGAGTGGAGCTATTGTGAGTCTGCTCCTGGTAGCATGGAAAAGAAAAGTCTCAATCAGTCTGATATCGTCATATCTGAAGAGTCGGTGAACTCCCTCCAGAAGAAAATTTGCTCATTGAACACGGACTCAGGCTCCAAAAGAAATGATTTTGATTCATTAGGACAATACATTGTGAAGTCAATGATGATTTTTTGA

Coding sequence (CDS)

ATGGACGTTCATTTTCAGAGGAGAGGCTGCCTCCTCACTACAATTTGGCACGGGAAACGCCTTCGTGCAAGGTTGATGGAGTGGAGCTATTGTGAGTCTGCTCCTGGTAGCATGGAAAAGAAAAGTCTCAATCAGTCTGATATCGTCATATCTGAAGAGTCGGTGAACTCCCTCCAGAAGAAAATTTGCTCATTGAACACGGACTCAGGCTCCAAAAGAAATGATTTTGATTCATTAGGACAATACATTGTGAAGTCAATGATGATTTTTTGA
Homology
[Close]
BLAST of CmoCh04G015820 vs. TrEMBL
Match: A0A0A0KR62_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G609640 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 7.3e-07
Identity = 35/60 (58.33%), Postives = 45/60 (75.00%), Query Frame = 1 

Query: 32  ESAPGSMEKKSLNQSDIVISEESV-NSLQKKICSLNTDSGSKRNDFDSLGQYIVKSMMIF 91
           ESAP S EKK LNQ + +I EE V +S  ++I SL+T+ GS +NDFDS+GQ +VKSMM F
Sbjct: 314 ESAPVSTEKKILNQHEFIIPEELVMDSHSEEIFSLDTNLGSNKNDFDSVGQDMVKSMMTF 373

[Close]
BLAST of CmoCh04G015820 vs. NCBI nr
Match: gi|778705982|ref|XP_011655775.1| (PREDICTED: uncharacterized protein LOC101212926 [Cucumis sativus])

HSP 1 Score: 61.2 bits (147), Expect = 1.0e-06
Identity = 35/60 (58.33%), Postives = 45/60 (75.00%), Query Frame = 1 

Query: 32  ESAPGSMEKKSLNQSDIVISEESV-NSLQKKICSLNTDSGSKRNDFDSLGQYIVKSMMIF 91
           ESAP S EKK LNQ + +I EE V +S  ++I SL+T+ GS +NDFDS+GQ +VKSMM F
Sbjct: 314 ESAPVSTEKKILNQHEFIIPEELVMDSHSEEIFSLDTNLGSNKNDFDSVGQDMVKSMMTF 373

The following BLAST results are available for this feature:
BLAST of CmoCh04G015820 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh04G015820 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KR62_CUCSA7.3e-0758.33Uncharacterized protein OS=Cucumis sativus GN=Csa_5G609640 PE=4 SV=1[more]
BLAST of CmoCh04G015820 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh04G015820 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778705982|ref|XP_011655775.1|1.0e-0658.33PREDICTED: uncharacterized protein LOC101212926 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G015820.1CmoCh04G015820.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh04G015820Cucumber (Chinese Long) v3cmocucB0803
CmoCh04G015820Cucumber (Chinese Long) v3cmocucB0874
CmoCh04G015820Watermelon (97103) v2cmowmbB729
CmoCh04G015820Watermelon (97103) v2cmowmbB745
CmoCh04G015820Wax gourdcmowgoB0847
CmoCh04G015820Wax gourdcmowgoB0892
CmoCh04G015820Cucurbita moschata (Rifu)cmocmoB126
CmoCh04G015820Cucurbita moschata (Rifu)cmocmoB265
CmoCh04G015820Cucurbita moschata (Rifu)cmocmoB336
CmoCh04G015820Cucurbita moschata (Rifu)cmocmoB467
CmoCh04G015820Cucumber (Gy14) v1cgycmoB0776
CmoCh04G015820Cucumber (Gy14) v1cgycmoB0793
CmoCh04G015820Cucurbita maxima (Rimu)cmacmoB312
CmoCh04G015820Cucurbita maxima (Rimu)cmacmoB420
CmoCh04G015820Cucurbita maxima (Rimu)cmacmoB738
CmoCh04G015820Cucurbita maxima (Rimu)cmacmoB728
CmoCh04G015820Wild cucumber (PI 183967)cmocpiB745
CmoCh04G015820Cucumber (Chinese Long) v2cmocuB679
CmoCh04G015820Cucumber (Chinese Long) v2cmocuB738
CmoCh04G015820Cucumber (Chinese Long) v2cmocuB729
CmoCh04G015820Melon (DHL92) v3.5.1cmomeB631
CmoCh04G015820Watermelon (Charleston Gray)cmowcgB654
CmoCh04G015820Watermelon (Charleston Gray)cmowcgB668
CmoCh04G015820Watermelon (97103) v1cmowmB693
CmoCh04G015820Watermelon (97103) v1cmowmB740
CmoCh04G015820Cucurbita pepo (Zucchini)cmocpeB651
CmoCh04G015820Cucurbita pepo (Zucchini)cmocpeB659
CmoCh04G015820Cucurbita pepo (Zucchini)cmocpeB673
CmoCh04G015820Cucurbita pepo (Zucchini)cmocpeB702
CmoCh04G015820Bottle gourd (USVL1VR-Ls)cmolsiB660
CmoCh04G015820Bottle gourd (USVL1VR-Ls)cmolsiB686
CmoCh04G015820Cucumber (Gy14) v2cgybcmoB123
CmoCh04G015820Cucumber (Gy14) v2cgybcmoB650
CmoCh04G015820Melon (DHL92) v3.6.1cmomedB720
CmoCh04G015820Melon (DHL92) v3.6.1cmomedB752
CmoCh04G015820Silver-seed gourdcarcmoB0814
CmoCh04G015820Silver-seed gourdcarcmoB1138
CmoCh04G015820Silver-seed gourdcarcmoB1397