CmoCh04G015400.1 (mRNA) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G015400.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Fasciclin-like arabinogalactan protein
Location	Cmo_Chr04 : 7879139 .. 7880119 (-)
Sequence length	981

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCCCACTCCTCGTCTCTCTCATCCTTTTTTCTCTCTTCTCTCTCTCTTCCCCTTTACCCTCTGTAACTGTTCTCAACGCTGCCGAAATCTTGTCCGACAATGGCTTTGTCTCAATGGCTCTTACGCTTGAGCTTATAGCCGAATCTTTGCTCTCACAGACAAATTCAATGACGATCTTCACACCTTCGGACACTGCTTTCGTTCAATCGGGTCAGCCTTCTCTCTCTCTCCTTCAATTCCACTTCTCGCCGCTCTACTCATCTCCTGAAAGCCTCAAATCGCTTGCGTTGGGCACCAAGATTCCTACGATGTTGGCTGGTCGATCGCTTACGGTAACCTCTTCCCGATCTGATTCTAAAGTTTCTTTAAACGGAGTAAAGATTAGTAACTCGCCGTTATACGATGACGGTTCGCTTGCTGTTTTCGGTATCGAGAAGTTTTTTAACCTAATATTCCAAGTTCCACCGCTTACTCCAAGTCCGAGTGCGAAATTTCGGTGTGGTCCATTGACGTTTAAGAATCCGTTTAGTGAAGCGATAAAAACTCTACGGTCTAATGGATATTCTTCAATGGCATTATTTCTTGAATCTCAGATTATAGGGTTTAATAATGGTCAATCCATGATGACCATCTTTGCTCCTTCCGATGATGCATTGGCTACTCGCATTGATAACTTTACCGATTACCCATCTCTATATTTTCGTCAGATTTTACCGTGCAGGATCTTGTGGAATGATTTAGCGAATCTTGAGGAAGGCACAGAGTTATCTACATATTCGGAGGGATACGAACTTTATATAGCGAAATCAAGCGGCATGTTGAGGATCAATGGAGTTGCAGTCTTCTACCCTAACATGTATTTGAACGAGTGGCTAGTGATCCATGGCCTTCTTGATGTTTTTTCTGCGGCAGAGAGAATCTCAGCAGAGGAATCAGATTCAGAAATGCATGGGATGGCAATGGATCACTGGTAA

mRNA sequence

ATGGCTTCCCCACTCCTCGTCTCTCTCATCCTTTTTTCTCTCTTCTCTCTCTCTTCCCCTTTACCCTCTGTAACTGTTCTCAACGCTGCCGAAATCTTGTCCGACAATGGCTTTGTCTCAATGGCTCTTACGCTTGAGCTTATAGCCGAATCTTTGCTCTCACAGACAAATTCAATGACGATCTTCACACCTTCGGACACTGCTTTCGTTCAATCGGGTCAGCCTTCTCTCTCTCTCCTTCAATTCCACTTCTCGCCGCTCTACTCATCTCCTGAAAGCCTCAAATCGCTTGCGTTGGGCACCAAGATTCCTACGATGTTGGCTGGTCGATCGCTTACGGTAACCTCTTCCCGATCTGATTCTAAAGTTTCTTTAAACGGAGTAAAGATTAGTAACTCGCCGTTATACGATGACGGTTCGCTTGCTGTTTTCGGTATCGAGAAGTTTTTTAACCTAATATTCCAAGTTCCACCGCTTACTCCAAGTCCGAGTGCGAAATTTCGGTGTGGTCCATTGACGTTTAAGAATCCGTTTAGTGAAGCGATAAAAACTCTACGGTCTAATGGATATTCTTCAATGGCATTATTTCTTGAATCTCAGATTATAGGGTTTAATAATGGTCAATCCATGATGACCATCTTTGCTCCTTCCGATGATGCATTGGCTACTCGCATTGATAACTTTACCGATTACCCATCTCTATATTTTCGTCAGATTTTACCGTGCAGGATCTTGTGGAATGATTTAGCGAATCTTGAGGAAGGCACAGAGTTATCTACATATTCGGAGGGATACGAACTTTATATAGCGAAATCAAGCGGCATGTTGAGGATCAATGGAGTTGCAGTCTTCTACCCTAACATGTATTTGAACGAGTGGCTAGTGATCCATGGCCTTCTTGATGTTTTTTCTGCGGCAGAGAGAATCTCAGCAGAGGAATCAGATTCAGAAATGCATGGGATGGCAATGGATCACTGGTAA

Coding sequence (CDS)

ATGGCTTCCCCACTCCTCGTCTCTCTCATCCTTTTTTCTCTCTTCTCTCTCTCTTCCCCTTTACCCTCTGTAACTGTTCTCAACGCTGCCGAAATCTTGTCCGACAATGGCTTTGTCTCAATGGCTCTTACGCTTGAGCTTATAGCCGAATCTTTGCTCTCACAGACAAATTCAATGACGATCTTCACACCTTCGGACACTGCTTTCGTTCAATCGGGTCAGCCTTCTCTCTCTCTCCTTCAATTCCACTTCTCGCCGCTCTACTCATCTCCTGAAAGCCTCAAATCGCTTGCGTTGGGCACCAAGATTCCTACGATGTTGGCTGGTCGATCGCTTACGGTAACCTCTTCCCGATCTGATTCTAAAGTTTCTTTAAACGGAGTAAAGATTAGTAACTCGCCGTTATACGATGACGGTTCGCTTGCTGTTTTCGGTATCGAGAAGTTTTTTAACCTAATATTCCAAGTTCCACCGCTTACTCCAAGTCCGAGTGCGAAATTTCGGTGTGGTCCATTGACGTTTAAGAATCCGTTTAGTGAAGCGATAAAAACTCTACGGTCTAATGGATATTCTTCAATGGCATTATTTCTTGAATCTCAGATTATAGGGTTTAATAATGGTCAATCCATGATGACCATCTTTGCTCCTTCCGATGATGCATTGGCTACTCGCATTGATAACTTTACCGATTACCCATCTCTATATTTTCGTCAGATTTTACCGTGCAGGATCTTGTGGAATGATTTAGCGAATCTTGAGGAAGGCACAGAGTTATCTACATATTCGGAGGGATACGAACTTTATATAGCGAAATCAAGCGGCATGTTGAGGATCAATGGAGTTGCAGTCTTCTACCCTAACATGTATTTGAACGAGTGGCTAGTGATCCATGGCCTTCTTGATGTTTTTTCTGCGGCAGAGAGAATCTCAGCAGAGGAATCAGATTCAGAAATGCATGGGATGGCAATGGATCACTGGTAA

Homology

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BLAST of CmoCh04G015400.1 vs. Swiss-Prot
Match: FLA20_ARATH (Putative fasciclin-like arabinogalactan protein 20 OS=Arabidopsis thaliana GN=FLA20 PE=3 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 6.2e-41
Identity = 117/348 (33.62%), Postives = 187/348 (53.74%), Query Frame = 1


Query: 1   MASPLLVSLIL-FSLFSLSSPLPSVT-VLNAAEILSDNGFVSMALTLELIAESL-LSQTN 60
           MAS LL +  L F +  +     S+T V +A E+LSD+G++SM LTL+L  + L L    
Sbjct: 42  MASKLLTTFFLIFFVLDIDLVATSMTSVSSAVEVLSDSGYLSMGLTLKLANQDLNLEDWQ 101

Query: 61  SMTIFTPSDTAFVQSGQPSLSLLQFHFSPLYSSPESLKSLALGTKIPTMLAGRSLTVT-S 120
            +T+F PSD +F + GQPSL  +++  SP     E+L++L  G KIPT+ +  SLTVT S
Sbjct: 102 ELTLFAPSDQSFSKFGQPSLLDMKYQLSPTRLPGETLRNLPNGAKIPTLRSNYSLTVTNS 161

Query: 121 SRSDSKVSLNGVKISNSPLYDDGSLAVFGIEKFF----------NLIFQVPPLT------ 180
           SR   K S+N V + +SP++DDG + ++G ++FF          +    +P  T      
Sbjct: 162 SRFGGKTSINNVVVQDSPVFDDGYVVIYGSDEFFTSPTKISDDSSSSSSIPSTTSSTGSI 221

Query: 181 ----------PSPSAKF--------RCGPLTFKNPFSEAIKTLRSNGYSSMALFLESQII 240
                     PSP+           R  P+   N F  A + L S G+  +A FL  Q+ 
Sbjct: 222 PIPSSATQTPPSPNIASDSTRNLPNRSKPVNRFNIFESASRLLMSRGFVIIATFLALQLE 281

Query: 241 GFNNG-QSMMTIFAPSDDALATRIDNFTDYPSLYFRQILPCRILWNDLANL-EEGTELST 300
              +G  + +T+FAP D+A+      F+DY +++   ++   +LW DL    +EG+ L T
Sbjct: 282 DNTSGNDTKITVFAPIDEAIPNPTTKFSDYVTIFRGHVVSQLLLWKDLQKFAKEGSILQT 341

Query: 301 YSEGYELYIAKSSGMLRINGVAVFYPNMYLNEWLVIHGLLDVFSAAER 309
             +GYE+ I+ S  +L +NGV + YP++Y+N+W+ +HG   +    E+
Sbjct: 342 VLKGYEIEISLSGDILLLNGVPLIYPDLYVNDWIAVHGFNQMIVTKEK 389

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BLAST of CmoCh04G015400.1 vs. TrEMBL
Match: A0A0A0KUM5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G611680 PE=4 SV=1)

HSP 1 Score: 458.4 bits (1178), Expect = 7.4e-126
Identity = 241/318 (75.79%), Postives = 273/318 (85.85%), Query Frame = 1


Query: 2   ASPLLVSLILFSLFSLSSPLPSVTVLNAAEILSDNGFVSMALTLELIAESLLSQTNSMTI 61
           +S L +SLIL SLFSLSSPL S TVL+AAEILS+NGFVSMALTLELIA+SLLSQ+NS+TI
Sbjct: 3   SSTLFISLILLSLFSLSSPLTSETVLDAAEILSNNGFVSMALTLELIADSLLSQSNSITI 62

Query: 62  FTPSDTAFVQSGQPSLSLLQFHFSPLYSSPESLKSLALGTKIPTMLAGRSLTVTSSRSDS 121
           F+P DT+FVQSGQPSLSLL+FHF PLY S  SL+S A GTKIPTML  +SLTVT+ +SDS
Sbjct: 63  FSPPDTSFVQSGQPSLSLLRFHFLPLYLSSGSLRSFAFGTKIPTMLPSQSLTVTTPQSDS 122

Query: 122 KVSLNGVKISNSPLYDDGSLAVFGIEKFFNLIFQVPPLTPSPSAKFRCGPLTFKNPFSEA 181
            +SLN VK+S+SP YDDG L V+GIEKFF+L F       SP+ KFRC  LT +NPF EA
Sbjct: 123 VISLNRVKVSSSPFYDDGLLVVYGIEKFFDLKFH------SPNMKFRCDLLTIRNPFGEA 182

Query: 182 IKTLRSNGYSSMALFLESQIIGFNNGQ-SMMTIFAPSDDALATRIDNFTDYPSLYFRQIL 241
           I+TLRS+GYSSMALFLESQI+GF+NGQ SMMT+FAPSDDAL TR+D FTDYPSLYFRQI 
Sbjct: 183 IETLRSHGYSSMALFLESQILGFSNGQSSMMTVFAPSDDALETRVDKFTDYPSLYFRQIS 242

Query: 242 PCRILWNDLANLEEGTELSTYSEGYELYIAKSSGMLRINGVAVFYPNMYLNEWLVIHGLL 301
           PCRI WNDL +LE+GTELSTYSEGY +Y+ KSSGMLRINGVAVFYPNMYLNEWLV+HGLL
Sbjct: 243 PCRISWNDLVDLEDGTELSTYSEGYTIYVTKSSGMLRINGVAVFYPNMYLNEWLVVHGLL 302

Query: 302 DVFSAAERISAEESDSEM 319
           DVF  AERIS  ESDSEM
Sbjct: 303 DVFPVAERISTVESDSEM 314

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BLAST of CmoCh04G015400.1 vs. TrEMBL
Match: K7LLL3_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_10G265700 PE=4 SV=1)

HSP 1 Score: 289.3 bits (739), Expect = 6.0e-75
Identity = 147/308 (47.73%), Postives = 218/308 (70.78%), Query Frame = 1


Query: 4   PLLVSLILFSLFSLSSPLPSVTVLNAAEILSDNGFVSMALTLELIAESLLSQTNSMTIFT 63
           PLL+ ++ F  FS    LP   + +AA++LSD+G+VSMALTLE++AE+LL Q+ S T+F 
Sbjct: 6   PLLLLILPFIFFSFGRALPREAIFDAADVLSDSGYVSMALTLEIVAETLLEQSPSATVFA 65

Query: 64  PSDTAFVQSGQPSLSLLQFHFSPLYSSPESLKSLALGTKIPTMLAGRSLTVTSSRSDSKV 123
           PSD+AF +SGQPSL LL+FH SPL   P SL+ L  G+KIPTML G++LTVT+S SD   
Sbjct: 66  PSDSAFKKSGQPSLDLLRFHLSPLPLPPASLRLLTAGSKIPTMLPGQTLTVTTSSSDRVT 125

Query: 124 SLNGVKISNSPLYDDGSLAVFGIEKFFNLIFQVPPLTPSPSAKFRCG----PLTFKNPFS 183
           S N +K++ SP+YDDG L V+GI++FF+  FQ     PS ++   C       +  + F 
Sbjct: 126 SFNNIKLTGSPIYDDGILLVYGIDRFFDPTFQFNSQRPSDNSDTSCSAKNHTASASDSFD 185

Query: 184 EAIKTLRSNGYSSMALFLESQIIGFNNGQSMMTIFAPSDDALATRIDNFTDYPSLYFRQI 243
           +AI+TL++ GYS+MA FL  Q+ G  + QS +T+FAP+DD + +RI +F +YPS + R +
Sbjct: 186 QAIQTLKTGGYSAMASFLGMQLSGVAD-QSGITVFAPTDDTVMSRIGDFGEYPSFFRRHV 245

Query: 244 LPCRILWNDLANLEEGTELSTYSEGYELYIAKSSGMLRINGVAVFYPNMYLNEWLVIHGL 303
           +PCR+LWNDL N  +G+EL T+ +G+ + I +S G+L +NGV VF+P+++ N+ +V+HG+
Sbjct: 246 VPCRLLWNDLVNFGDGSELPTFLDGFAINITRSDGVLILNGVPVFFPDVFFNDRVVVHGV 305

Query: 304 LDVFSAAE 308
            DV +A +
Sbjct: 306 SDVLAAQD 312

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BLAST of CmoCh04G015400.1 vs. TrEMBL
Match: M5Y0U7_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa021895mg PE=4 SV=1)

HSP 1 Score: 287.7 bits (735), Expect = 1.7e-74
Identity = 171/333 (51.35%), Postives = 221/333 (66.37%), Query Frame = 1


Query: 1   MASPLLVSLILFSLFSLSSPLPSVTVLNAAEILSDNGFVSMALTLELIAESLLSQTNSMT 60
           MA+ LLVSLIL SL SLSS LP+  VL+AAEILSD+GFVSMALTLEL+++SL+ Q+ S+T
Sbjct: 1   MAALLLVSLILLSLLSLSSSLPNQAVLDAAEILSDSGFVSMALTLELVSQSLVPQSPSLT 60

Query: 61  IFTPSDTAFVQSGQPSLSLLQFHFSPLYSSPESLKSLALGTKIPTMLAGRSLTVTSSRSD 120
           IF P DTAF +SGQPSLSLLQ HF PL    ++LK+L  GTKIPT+L+G SL VT+  S 
Sbjct: 61  IFAPPDTAFTRSGQPSLSLLQIHFCPLPLPLQTLKALPAGTKIPTLLSGHSLIVTTPSSG 120

Query: 121 SKVSLNGVKI-SNSPLYDDGSLAVFGIEKFFNLIFQVPPLTPSPSAKFRCGPLTFKNP-- 180
           + +SLN VKI S +PLYDDG L +FG++KFF+  FQ+P    SP     C   T  +   
Sbjct: 121 APISLNNVKITSAAPLYDDGFLIIFGVDKFFDANFQLPIPIRSPVPDPVCESSTSSSSAN 180

Query: 181 ------------FSEAIKTLRSNGYSSMALFLESQIIGFNNGQSMMTIFAPSDDALATRI 240
                       F  A   LRSNGY+ MA FL+ Q++GF N  S MT+FAP D A    I
Sbjct: 181 VTTTIGFPGASWFEGASAVLRSNGYNVMASFLDLQLVGFKNPNS-MTVFAPLDQA----I 240

Query: 241 DNFTDYPSLYFRQILPCRILWNDLANLEEGTELSTYSEGYELYIAKSSGMLRINGVAVFY 300
           +N   YPS++ R ++PCR+LW+DL    EGT L TY EG+ + I++S  +L +NGV VF+
Sbjct: 241 ENPLQYPSIFLRHVVPCRLLWSDLVRFNEGTVLPTYMEGFTITISRSGDVLLLNGVPVFF 300

Query: 301 PNMYLNEWLVIHGLLDVFSAAERIS-AEESDSE 318
            NMY ++ LV+HGL +     E    A+ES  E
Sbjct: 301 ANMYYSDSLVVHGLRESLVMLEMPEVADESSPE 328

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BLAST of CmoCh04G015400.1 vs. TrEMBL
Match: W9RD61_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_025876 PE=4 SV=1)

HSP 1 Score: 287.3 bits (734), Expect = 2.3e-74
Identity = 162/325 (49.85%), Postives = 227/325 (69.85%), Query Frame = 1


Query: 4   PLLVSLILFSLFSLSSPLPSVTVLNAAEILSDNGFVSMALTLELIAESLLSQTNSMTIFT 63
           P++  L+LFSL SLSS LPS TVL+A+EIL+D+G VSMALTLEL++++L  ++ S+TIF 
Sbjct: 6   PIISFLVLFSLPSLSSSLPSDTVLDASEILTDSGHVSMALTLELVSQTLTLKSPSLTIFA 65

Query: 64  PSDTAFVQSGQPSLSLLQFHFSPLYSSPESLKSLALGTKIPTMLAGRSLTVTSSRSDSKV 123
           P D AF +SGQP+LSLLQ+HF PL  S E +KSL  GTKIPT+L+G  L VTSS  DS++
Sbjct: 66  PPDAAFSKSGQPALSLLQYHFCPLPLSLEKIKSLPAGTKIPTLLSGHVLIVTSSPFDSQI 125

Query: 124 SLNGVKI-SNSPLYDDGSLAVFGIEKFFNLIFQVPPLTPSPSAKFRC--GPLTFKNP--F 183
           SLN VKI S SP+++DGSL +FGIE FF+L +Q P   PSP +   C   P  F     F
Sbjct: 126 SLNNVKITSESPIFNDGSLIIFGIEDFFDLNYQDPGSVPSPRSGSICELSPTVFPGASWF 185

Query: 184 SEAIKTLRSNGYSSMALFLESQIIGFNNGQS-MMTIFAPSDDALATRIDNFTDYPSLYFR 243
            EA   LR NGYS+MA FL+ Q++GF+  +S  MT+FAP+D A++ R    +  PS++ R
Sbjct: 186 KEASDNLRFNGYSAMAAFLDLQLLGFDKERSAAMTVFAPTDQAMSKRPSQHSS-PSIFLR 245

Query: 244 QILPCRILWNDLANLEEGTELSTYSEGYELYIAKSSGMLRINGVAVFYPNMYLNEWLVIH 303
            ++PCR+LW+DL +L  GT L TYSEG+ + + +S  +L +NG+ VFY NM+ ++ + +H
Sbjct: 246 HVVPCRLLWSDLMSLSAGTVLPTYSEGFTITVTRSDSVLMLNGIPVFYANMHYSDSVAVH 305

Query: 304 GLLDVF-----SAAERISAEESDSE 318
           GL ++      + +E +SA  S+ E
Sbjct: 306 GLNEILVPQEVAESEPLSAPVSEPE 329

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BLAST of CmoCh04G015400.1 vs. TrEMBL
Match: V7BBQ6_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_007G037300g PE=4 SV=1)

HSP 1 Score: 285.8 bits (730), Expect = 6.6e-74
Identity = 141/299 (47.16%), Postives = 217/299 (72.58%), Query Frame = 1


Query: 8   SLILFSLFSLSSPLPSVTVLNAAEILSDNGFVSMALTLELIAESLLSQTNSMTIFTPSDT 67
           + +    FSL+  LP   + +AA++LSD+GFVSMALTLE++AE+LL Q+ S T+F PSD+
Sbjct: 5   AFVFVLFFSLAGALPREAIFDAADVLSDSGFVSMALTLEVVAETLLEQSPSATVFAPSDS 64

Query: 68  AFVQSGQPSLSLLQFHFSPLYSSPESLKSLALGTKIPTMLAGRSLTVTSSRSDSKVSLNG 127
           AF +SGQPSL LL+FH +PL  +P SL+ L  G KIPTML+G+SLT T+S +D   S+N 
Sbjct: 65  AFKKSGQPSLDLLRFHLAPLPLTPSSLRLLTAGAKIPTMLSGQSLTATTSSADRLTSINN 124

Query: 128 VKISNSPLYDDGSLAVFGIEKFFNLIFQVPPLTPS-PSAKFRCGPLTFKNPFSEAIKTLR 187
           +K++ SP+YDDGSL V+GI++FF+  FQ+P  + S  S   +    +  + F++AI+TL+
Sbjct: 125 IKLTQSPIYDDGSLLVYGIDRFFDPNFQLPSSSDSNSSCSAKNHTASVSDSFNQAIQTLK 184

Query: 188 SNGYSSMALFLESQIIGFNNGQSMMTIFAPSDDALATRIDNFTDYPSLYFRQILPCRILW 247
           + GYS++A FLE Q+ G     S +T+FAP+DD +  RI +F+ YPS + R ++PCR+LW
Sbjct: 185 TGGYSAVAAFLEMQLFGVAE-FSGITVFAPADDLVLNRIGDFSQYPSFFRRHVVPCRLLW 244

Query: 248 NDLANLEEGTELSTYSEGYELYIAKSSGMLRINGVAVFYPNMYLNEWLVIHGLLDVFSA 306
           NDL N ++G+ELS++ EG+ + I +S G+L  NGV VF+P+++ N+ +V+HG+ ++ ++
Sbjct: 245 NDLVNFDDGSELSSFLEGFTINITRSGGVLVFNGVPVFFPDVFFNDRIVVHGVSNILAS 302

[Close]

BLAST of CmoCh04G015400.1 vs. TAIR10
Match: AT5G40940.1 (AT5G40940.1 putative fasciclin-like arabinogalactan protein 20)

HSP 1 Score: 169.5 bits (428), Expect = 3.5e-42
Identity = 117/348 (33.62%), Postives = 187/348 (53.74%), Query Frame = 1


Query: 1   MASPLLVSLIL-FSLFSLSSPLPSVT-VLNAAEILSDNGFVSMALTLELIAESL-LSQTN 60
           MAS LL +  L F +  +     S+T V +A E+LSD+G++SM LTL+L  + L L    
Sbjct: 42  MASKLLTTFFLIFFVLDIDLVATSMTSVSSAVEVLSDSGYLSMGLTLKLANQDLNLEDWQ 101

Query: 61  SMTIFTPSDTAFVQSGQPSLSLLQFHFSPLYSSPESLKSLALGTKIPTMLAGRSLTVT-S 120
            +T+F PSD +F + GQPSL  +++  SP     E+L++L  G KIPT+ +  SLTVT S
Sbjct: 102 ELTLFAPSDQSFSKFGQPSLLDMKYQLSPTRLPGETLRNLPNGAKIPTLRSNYSLTVTNS 161

Query: 121 SRSDSKVSLNGVKISNSPLYDDGSLAVFGIEKFF----------NLIFQVPPLT------ 180
           SR   K S+N V + +SP++DDG + ++G ++FF          +    +P  T      
Sbjct: 162 SRFGGKTSINNVVVQDSPVFDDGYVVIYGSDEFFTSPTKISDDSSSSSSIPSTTSSTGSI 221

Query: 181 ----------PSPSAKF--------RCGPLTFKNPFSEAIKTLRSNGYSSMALFLESQII 240
                     PSP+           R  P+   N F  A + L S G+  +A FL  Q+ 
Sbjct: 222 PIPSSATQTPPSPNIASDSTRNLPNRSKPVNRFNIFESASRLLMSRGFVIIATFLALQLE 281

Query: 241 GFNNG-QSMMTIFAPSDDALATRIDNFTDYPSLYFRQILPCRILWNDLANL-EEGTELST 300
              +G  + +T+FAP D+A+      F+DY +++   ++   +LW DL    +EG+ L T
Sbjct: 282 DNTSGNDTKITVFAPIDEAIPNPTTKFSDYVTIFRGHVVSQLLLWKDLQKFAKEGSILQT 341

Query: 301 YSEGYELYIAKSSGMLRINGVAVFYPNMYLNEWLVIHGLLDVFSAAER 309
             +GYE+ I+ S  +L +NGV + YP++Y+N+W+ +HG   +    E+
Sbjct: 342 VLKGYEIEISLSGDILLLNGVPLIYPDLYVNDWIAVHGFNQMIVTKEK 389

[Close]

BLAST of CmoCh04G015400.1 vs. NCBI nr
Match: gi|778708686|ref|XP_004135381.2| (PREDICTED: putative fasciclin-like arabinogalactan protein 20 [Cucumis sativus])

HSP 1 Score: 458.4 bits (1178), Expect = 1.1e-125
Identity = 241/318 (75.79%), Postives = 273/318 (85.85%), Query Frame = 1


Query: 2   ASPLLVSLILFSLFSLSSPLPSVTVLNAAEILSDNGFVSMALTLELIAESLLSQTNSMTI 61
           +S L +SLIL SLFSLSSPL S TVL+AAEILS+NGFVSMALTLELIA+SLLSQ+NS+TI
Sbjct: 3   SSTLFISLILLSLFSLSSPLTSETVLDAAEILSNNGFVSMALTLELIADSLLSQSNSITI 62

Query: 62  FTPSDTAFVQSGQPSLSLLQFHFSPLYSSPESLKSLALGTKIPTMLAGRSLTVTSSRSDS 121
           F+P DT+FVQSGQPSLSLL+FHF PLY S  SL+S A GTKIPTML  +SLTVT+ +SDS
Sbjct: 63  FSPPDTSFVQSGQPSLSLLRFHFLPLYLSSGSLRSFAFGTKIPTMLPSQSLTVTTPQSDS 122

Query: 122 KVSLNGVKISNSPLYDDGSLAVFGIEKFFNLIFQVPPLTPSPSAKFRCGPLTFKNPFSEA 181
            +SLN VK+S+SP YDDG L V+GIEKFF+L F       SP+ KFRC  LT +NPF EA
Sbjct: 123 VISLNRVKVSSSPFYDDGLLVVYGIEKFFDLKFH------SPNMKFRCDLLTIRNPFGEA 182

Query: 182 IKTLRSNGYSSMALFLESQIIGFNNGQ-SMMTIFAPSDDALATRIDNFTDYPSLYFRQIL 241
           I+TLRS+GYSSMALFLESQI+GF+NGQ SMMT+FAPSDDAL TR+D FTDYPSLYFRQI 
Sbjct: 183 IETLRSHGYSSMALFLESQILGFSNGQSSMMTVFAPSDDALETRVDKFTDYPSLYFRQIS 242

Query: 242 PCRILWNDLANLEEGTELSTYSEGYELYIAKSSGMLRINGVAVFYPNMYLNEWLVIHGLL 301
           PCRI WNDL +LE+GTELSTYSEGY +Y+ KSSGMLRINGVAVFYPNMYLNEWLV+HGLL
Sbjct: 243 PCRISWNDLVDLEDGTELSTYSEGYTIYVTKSSGMLRINGVAVFYPNMYLNEWLVVHGLL 302

Query: 302 DVFSAAERISAEESDSEM 319
           DVF  AERIS  ESDSEM
Sbjct: 303 DVFPVAERISTVESDSEM 314

[Close]

BLAST of CmoCh04G015400.1 vs. NCBI nr
Match: gi|659091712|ref|XP_008446692.1| (PREDICTED: putative fasciclin-like arabinogalactan protein 20 [Cucumis melo])

HSP 1 Score: 458.0 bits (1177), Expect = 1.4e-125
Identity = 241/318 (75.79%), Postives = 272/318 (85.53%), Query Frame = 1


Query: 2   ASPLLVSLILFSLFSLSSPLPSVTVLNAAEILSDNGFVSMALTLELIAESLLSQTNSMTI 61
           +S L +SLIL SLFSLSS L S TVL+AAEILSDNGFVSMALTLELIAESLLSQ+NS+TI
Sbjct: 3   SSTLFISLILLSLFSLSSSLTSETVLDAAEILSDNGFVSMALTLELIAESLLSQSNSITI 62

Query: 62  FTPSDTAFVQSGQPSLSLLQFHFSPLYSSPESLKSLALGTKIPTMLAGRSLTVTSSRSDS 121
           F+P DT+FVQSGQPSLSLL+FHF PLY SP SL+S A GTKIPTML  +SLTVT+ +SDS
Sbjct: 63  FSPPDTSFVQSGQPSLSLLRFHFLPLYLSPGSLRSFAFGTKIPTMLPSQSLTVTTPQSDS 122

Query: 122 KVSLNGVKISNSPLYDDGSLAVFGIEKFFNLIFQVPPLTPSPSAKFRCGPLTFKNPFSEA 181
            +SLN VK+S+SP YDDG L V+GIEKFF+L FQ      SP+ KFRC  LT +NPF EA
Sbjct: 123 VISLNRVKVSSSPFYDDGLLVVYGIEKFFDLKFQ------SPNMKFRCDLLTIRNPFGEA 182

Query: 182 IKTLRSNGYSSMALFLESQIIGFNNGQ-SMMTIFAPSDDALATRIDNFTDYPSLYFRQIL 241
           I+ LRSNGYSSMALFLESQI+GF+NGQ SMMT+FAPSD+AL TR+D FTDYPSLYFRQIL
Sbjct: 183 IEILRSNGYSSMALFLESQILGFSNGQSSMMTVFAPSDEALETRVDKFTDYPSLYFRQIL 242

Query: 242 PCRILWNDLANLEEGTELSTYSEGYELYIAKSSGMLRINGVAVFYPNMYLNEWLVIHGLL 301
           PCRI WNDL +LE GTELSTYSEGY +++ KSSGML+INGVAVFYPNMYLNEWLV+HGLL
Sbjct: 243 PCRISWNDLVDLENGTELSTYSEGYTIHVTKSSGMLKINGVAVFYPNMYLNEWLVVHGLL 302

Query: 302 DVFSAAERISAEESDSEM 319
           DVF  AER S  ESDSEM
Sbjct: 303 DVFPVAERTSTVESDSEM 314

[Close]

BLAST of CmoCh04G015400.1 vs. NCBI nr
Match: gi|225424180|ref|XP_002280452.1| (PREDICTED: putative fasciclin-like arabinogalactan protein 20 [Vitis vinifera])

HSP 1 Score: 295.8 bits (756), Expect = 9.1e-77
Identity = 165/326 (50.61%), Postives = 227/326 (69.63%), Query Frame = 1


Query: 1   MASPLLVSLILFSLFSLSSPLPSVTVLNAAEILSDNGFVSMALTLELIAESLLSQTNSMT 60
           MA  LL SLI+F LFSLSS LPS T+L+AAEILSD+G+VSM+LTLEL++++LL ++ S T
Sbjct: 1   MAYSLLTSLIIFCLFSLSSSLPSQTILDAAEILSDSGYVSMSLTLELVSQTLLPKSPSAT 60

Query: 61  IFTPSDTAFVQSGQPSLSLLQFHFSPLYSSPESLKSLALGTKIPTMLAGRSLTVTSSRSD 120
           +F  SD AF++SGQP LSLLQFH SPL  S ESL+SL +G KIPTM A  SL VTS+ SD
Sbjct: 61  LFAASDAAFIESGQPPLSLLQFHSSPLALSFESLRSLPVGAKIPTMFANHSLIVTSAASD 120

Query: 121 SKVSLNGVKISNSPLYDDGSLAVFGIEKFFNLIFQVPPLTPSPSAKFRCGPLTFK----N 180
           S++SLN V I++SPL+DDGSL +FG++KFF+L F    LT SPS    C          +
Sbjct: 121 SQISLNNVNITSSPLFDDGSLIIFGVDKFFDLNFPALGLTRSPSPNTGCTDDAIASSGGD 180

Query: 181 PFSEAIKTLRSNGYSSMALFLESQIIGFNNGQSMMTIFAPSDDALATRIDNFTDY-PSLY 240
            F EA   LRS GY  MA FL+ Q++GF +G + MT+ AP+D+ +  R+ NF+D   S++
Sbjct: 181 SFDEASGVLRSRGYFVMASFLDLQLLGFRDG-TKMTVLAPADEVMMDRVGNFSDISSSIF 240

Query: 241 FRQILPCRILWNDLANLEEGTELSTYSEGYELYIAKSSGMLRINGVAVFYPNMYLNEWLV 300
            R +LPC++ W+DL N ++G+ L T  EG+ + I +S   L++N V+V +P+MY ++WLV
Sbjct: 241 LRHVLPCKVSWSDLVNFDDGSMLPTSLEGFTINITRSGDTLKLNEVSVAFPDMYHSDWLV 300

Query: 301 IHGLLDVFS-AAERISAEESDSEMHG 321
           +HGL +V +       A +S SE  G
Sbjct: 301 VHGLGEVLTLLVGPEQAADSSSETGG 325

[Close]

BLAST of CmoCh04G015400.1 vs. NCBI nr
Match: gi|1009155114|ref|XP_015895539.1| (PREDICTED: putative fasciclin-like arabinogalactan protein 20 [Ziziphus jujuba])

HSP 1 Score: 294.7 bits (753), Expect = 2.0e-76
Identity = 163/317 (51.42%), Postives = 220/317 (69.40%), Query Frame = 1


Query: 1   MASPLLVSLILFSLFSLSSPLPSVTVLNAAEILSDNGFVSMALTLELIAESLLSQTNSMT 60
           MAS LLVS +L S  S +SPLPS T+L+AAEILSD+GFVSMALTLE+++++L  Q+ S+T
Sbjct: 1   MASSLLVSFLLLSFLSFASPLPSDTILDAAEILSDSGFVSMALTLEIVSQTLTVQSPSLT 60

Query: 61  IFTPSDTAFVQSGQPSLSLLQFHFSPLYSSPESLKSLALGTKIPTMLAGRSLTVTSSRSD 120
           IF P+D+AF Q+GQPSLSLLQFHF P+    ESLK L+ GTKIPT+L+G SL VTSS S 
Sbjct: 61  IFAPNDSAFSQAGQPSLSLLQFHFCPIPLPLESLKLLSTGTKIPTLLSGHSLIVTSSPSS 120

Query: 121 SKVSLNGVKIS-NSPLYDDGSLAVFGIEKFFNLIFQVPPLTPSPSAKFRCGPLTFKNP-- 180
            ++SLN VKI+  SP+YDDGS+ +FGIE FF+  F +P    SP +  RCG  +      
Sbjct: 121 DQISLNNVKITGGSPIYDDGSMIIFGIEDFFDPNFGLPVPISSPRSTPRCGSSSTNGSMD 180

Query: 181 ------FSEAIKTLRSNGYSSMALFLESQIIGFNNGQSMMTIFAPSDDALATRIDNFTDY 240
                 F  A   LRSNG+S MA FL+ Q+ GF    +MMTIFAP D ++   + N    
Sbjct: 181 FPGVSWFEGASAALRSNGHSVMASFLDLQLEGFKE-PTMMTIFAPVDQSMVNPMKNV--- 240

Query: 241 PSLYFRQILPCRILWNDLANLEEGTELSTYSEGYELYIAKSSGMLRINGVAVFYPNMYLN 300
            S++ R ++PC++LWNDL N ++GT L TYS G+ + + +S  +L +NGV VF+PNMY +
Sbjct: 241 -SVFLRHVVPCKLLWNDLVNFDDGTVLPTYSNGFTITVTRSDSVLMLNGVPVFFPNMYFS 300

Query: 301 EWLVIHGLLDVFSAAER 309
           + LV+HGL +V +  E+
Sbjct: 301 DPLVVHGLNEVLAVQEK 312

[Close]

BLAST of CmoCh04G015400.1 vs. NCBI nr
Match: gi|571484766|ref|XP_006589647.1| (PREDICTED: putative fasciclin-like arabinogalactan protein 20 [Glycine max])

HSP 1 Score: 289.3 bits (739), Expect = 8.6e-75
Identity = 147/308 (47.73%), Postives = 218/308 (70.78%), Query Frame = 1


Query: 4   PLLVSLILFSLFSLSSPLPSVTVLNAAEILSDNGFVSMALTLELIAESLLSQTNSMTIFT 63
           PLL+ ++ F  FS    LP   + +AA++LSD+G+VSMALTLE++AE+LL Q+ S T+F 
Sbjct: 6   PLLLLILPFIFFSFGRALPREAIFDAADVLSDSGYVSMALTLEIVAETLLEQSPSATVFA 65

Query: 64  PSDTAFVQSGQPSLSLLQFHFSPLYSSPESLKSLALGTKIPTMLAGRSLTVTSSRSDSKV 123
           PSD+AF +SGQPSL LL+FH SPL   P SL+ L  G+KIPTML G++LTVT+S SD   
Sbjct: 66  PSDSAFKKSGQPSLDLLRFHLSPLPLPPASLRLLTAGSKIPTMLPGQTLTVTTSSSDRVT 125

Query: 124 SLNGVKISNSPLYDDGSLAVFGIEKFFNLIFQVPPLTPSPSAKFRCG----PLTFKNPFS 183
           S N +K++ SP+YDDG L V+GI++FF+  FQ     PS ++   C       +  + F 
Sbjct: 126 SFNNIKLTGSPIYDDGILLVYGIDRFFDPTFQFNSQRPSDNSDTSCSAKNHTASASDSFD 185

Query: 184 EAIKTLRSNGYSSMALFLESQIIGFNNGQSMMTIFAPSDDALATRIDNFTDYPSLYFRQI 243
           +AI+TL++ GYS+MA FL  Q+ G  + QS +T+FAP+DD + +RI +F +YPS + R +
Sbjct: 186 QAIQTLKTGGYSAMASFLGMQLSGVAD-QSGITVFAPTDDTVMSRIGDFGEYPSFFRRHV 245

Query: 244 LPCRILWNDLANLEEGTELSTYSEGYELYIAKSSGMLRINGVAVFYPNMYLNEWLVIHGL 303
           +PCR+LWNDL N  +G+EL T+ +G+ + I +S G+L +NGV VF+P+++ N+ +V+HG+
Sbjct: 246 VPCRLLWNDLVNFGDGSELPTFLDGFAINITRSDGVLILNGVPVFFPDVFFNDRVVVHGV 305

Query: 304 LDVFSAAE 308
            DV +A +
Sbjct: 306 SDVLAAQD 312

The following BLAST results are available for this feature:

BLAST of CmoCh04G015400.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
FLA20_ARATH	6.2e-41	33.62	Putative fasciclin-like arabinogalactan protein 20 OS=Arabidopsis thaliana GN=FL...	[more]

BLAST of CmoCh04G015400.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KUM5_CUCSA	7.4e-126	75.79	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G611680 PE=4 SV=1	[more]
K7LLL3_SOYBN	6.0e-75	47.73	Uncharacterized protein OS=Glycine max GN=GLYMA_10G265700 PE=4 SV=1	[more]
M5Y0U7_PRUPE	1.7e-74	51.35	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa021895mg PE=4 SV=1	[more]
W9RD61_9ROSA	2.3e-74	49.85	Uncharacterized protein OS=Morus notabilis GN=L484_025876 PE=4 SV=1	[more]
V7BBQ6_PHAVU	6.6e-74	47.16	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_007G037300g PE=4 SV=1	[more]

BLAST of CmoCh04G015400.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G40940.1	3.5e-42	33.62	putative fasciclin-like arabinogalactan protein 20	[more]

BLAST of CmoCh04G015400.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778708686\|ref\|XP_004135381.2\|	1.1e-125	75.79	PREDICTED: putative fasciclin-like arabinogalactan protein 20 [Cucumis sativus]	[more]
gi\|659091712\|ref\|XP_008446692.1\|	1.4e-125	75.79	PREDICTED: putative fasciclin-like arabinogalactan protein 20 [Cucumis melo]	[more]
gi\|225424180\|ref\|XP_002280452.1\|	9.1e-77	50.61	PREDICTED: putative fasciclin-like arabinogalactan protein 20 [Vitis vinifera]	[more]
gi\|1009155114\|ref\|XP_015895539.1\|	2.0e-76	51.42	PREDICTED: putative fasciclin-like arabinogalactan protein 20 [Ziziphus jujuba]	[more]
gi\|571484766\|ref\|XP_006589647.1\|	8.6e-75	47.73	PREDICTED: putative fasciclin-like arabinogalactan protein 20 [Glycine max]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR000782	FAS1_domain

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh04G015400	CmoCh04G015400	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh04G015400.1	CmoCh04G015400.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh04G015400.1.CDS.1	CmoCh04G015400.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh04G015400.1.exon.1	CmoCh04G015400.1.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000782	FAS1 domain	GENE3D	G3DSA:2.30.180.10		coord: 182..302 score: 1.0E-6coord: 30..134 score: 4.
IPR000782	FAS1 domain	PFAM	PF02469	Fasciclin	coord: 48..133 score: 9.
IPR000782	FAS1 domain	SMART	SM00554	fasc_3	coord: 212..306 score: 1.1E-4coord: 60..154 score: 0
IPR000782	FAS1 domain	PROFILE	PS50213	FAS1	coord: 26..154 score: 10
IPR000782	FAS1 domain	unknown	SSF82153	FAS1 domain	coord: 23..148 score: 8.24E-10coord: 177..302 score: 4.05
None	No IPR available	PANTHER	PTHR33985	FAMILY NOT NAMED	coord: 26..308 score: 1.1
None	No IPR available	PANTHER	PTHR33985:SF4	FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 20-RELATED	coord: 26..308 score: 1.1