CmoCh04G014390.1 (mRNA) Cucurbita moschata (Rifu)

NameCmoCh04G014390.1
TypemRNA
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr04 : 7364763 .. 7365245 (+)
Sequence length483
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAAATGAATCCTAAGAATCCCAACAAGCCTGCTCCTATAATCACTCCAAACGCAATGCCTGCCTTTTGTCCGCCACTCAGTCCTTTTGAATCTGCACCACCCTTTTCATTCAATGCTTTGTTCGTGCCCGGCGCCGGCGGCGGAGATGAGCTTACGTCAGGCGAAGGTGCGGGTGGTGAGATGTTGGTGTCGGGTGGCGGTGGTGGACTCTCAGTGGTATTTGATGGTGGCGGAGGCGGACTGCCAGTTGTGTTGGATGGCGGCGGCGGAGGTGGACTGCCAGTTGTGTTGGATGGCGCTGGCGGAGGTGGACTGCCAGTTGTGTTGGATGGCGCTGGCGGAGGTGGGCTGCCAGTTGTGTTGGATGGCACTGGCGGAGGTGGACTGCCAGTTGTGTTGGATGGCGGCGGCGGCGGCGGCGGCGGTGCACCATCGGTTGTATTCAACGGCGGCGGTGGAGGAGGAGGAGATGCATCTTGA

mRNA sequence

ATGCAAATGAATCCTAAGAATCCCAACAAGCCTGCTCCTATAATCACTCCAAACGCAATGCCTGCCTTTTGTCCGCCACTCAGTCCTTTTGAATCTGCACCACCCTTTTCATTCAATGCTTTGTTCGTGCCCGGCGCCGGCGGCGGAGATGAGCTTACGTCAGGCGAAGGTGCGGGTGGTGAGATGTTGGTGTCGGGTGGCGGTGGTGGACTCTCAGTGGTATTTGATGGTGGCGGAGGCGGACTGCCAGTTGTGTTGGATGGCGGCGGCGGAGGTGGACTGCCAGTTGTGTTGGATGGCGCTGGCGGAGGTGGACTGCCAGTTGTGTTGGATGGCGCTGGCGGAGGTGGGCTGCCAGTTGTGTTGGATGGCACTGGCGGAGGTGGACTGCCAGTTGTGTTGGATGGCGGCGGCGGCGGCGGCGGCGGTGCACCATCGGTTGTATTCAACGGCGGCGGTGGAGGAGGAGGAGATGCATCTTGA

Coding sequence (CDS)

ATGCAAATGAATCCTAAGAATCCCAACAAGCCTGCTCCTATAATCACTCCAAACGCAATGCCTGCCTTTTGTCCGCCACTCAGTCCTTTTGAATCTGCACCACCCTTTTCATTCAATGCTTTGTTCGTGCCCGGCGCCGGCGGCGGAGATGAGCTTACGTCAGGCGAAGGTGCGGGTGGTGAGATGTTGGTGTCGGGTGGCGGTGGTGGACTCTCAGTGGTATTTGATGGTGGCGGAGGCGGACTGCCAGTTGTGTTGGATGGCGGCGGCGGAGGTGGACTGCCAGTTGTGTTGGATGGCGCTGGCGGAGGTGGACTGCCAGTTGTGTTGGATGGCGCTGGCGGAGGTGGGCTGCCAGTTGTGTTGGATGGCACTGGCGGAGGTGGACTGCCAGTTGTGTTGGATGGCGGCGGCGGCGGCGGCGGCGGTGCACCATCGGTTGTATTCAACGGCGGCGGTGGAGGAGGAGGAGATGCATCTTGA
BLAST of CmoCh04G014390.1 vs. TrEMBL
Match: A8E425_PSEVI (HrpW OS=Pseudomonas viridiflava GN=hrpW PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.5e-07
Identity = 64/106 (60.38%), Postives = 66/106 (62.26%), Query Frame = 1

Query: 54  SGEGAGGEMLVSGGGGGLSVVFDGGGGGLPVVLDGGGGGGLPVVLDGAGGGGLPVVLDGA 113
           +G+G GG     GGGG  SV   GGGGG P V  GGGGGG P V  G GGGG P V  G 
Sbjct: 244 AGKGGGG-----GGGGTPSVGGGGGGGGTPSVGGGGGGGGTPSVGGGGGGGGTPSVGGGG 303

Query: 114 GGGGLPVVLDGTGGGGLPVVLDGGGGGGGGAPSVVFNGGGGGGGDA 160
           GGGG P V  G GGGG P V  GGGGGGGG PSV   GGGGGG  A
Sbjct: 304 GGGGTPSVGGGGGGGGTPSV--GGGGGGGGTPSV---GGGGGGTPA 339

BLAST of CmoCh04G014390.1 vs. TrEMBL
Match: Q8WSL3_PLAVN (Circumsporozoite protein OS=Plasmodium vinckei petteri GN=CS PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.5e-07
Identity = 75/139 (53.96%), Postives = 82/139 (58.99%), Query Frame = 1

Query: 35  PFSFNALFVPGAGGGDELTSGEGAGGEMLVSGGGGGLSV---VFDGGGGGL---PVVLDG 94
           P +  A  V G GGG     G G     +V GGGGG      V DGGGGG    P V+DG
Sbjct: 148 PAAAAAAVVDGGGGG-----GGGGQDPPVVDGGGGGGGQDPPVVDGGGGGGGQDPPVVDG 207

Query: 95  GGGGGL--PVVLDGAGGGGL--PVVLDGAGGGGL--PVVLDGTGGGGL--PVVLDGGGGG 154
           GGGGG   P V+DG GGGG   P V+DG GGGG   P V+DG GGGG   P V+DGGGGG
Sbjct: 208 GGGGGGQDPPVVDGGGGGGGQDPPVVDGGGGGGGQDPPVVDGGGGGGGQDPPVVDGGGGG 267

Query: 155 GGGAPSVVFNGGGGGGGDA 160
           GG  P VV  GGG GG DA
Sbjct: 268 GGQDPPVVDGGGGRGGQDA 281

BLAST of CmoCh04G014390.1 vs. TrEMBL
Match: R7UA08_CAPTE (Uncharacterized protein OS=Capitella teleta GN=CAPTEDRAFT_195602 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.7e-06
Identity = 62/120 (51.67%), Postives = 72/120 (60.00%), Query Frame = 1

Query: 41  LFVPGAGGGDELTSGEGAGGEMLVSGGGGGLSVVFDGGGGGLPVVLDGGGGGGLPVVLDG 100
           LF  G GG   +  G G G  ++V GGGGG  VV  GGGGG  VV+ GGGGG + VV+  
Sbjct: 4   LFYSGGGGKVVVVVGGGGGKVVVVVGGGGGKVVVVVGGGGGKVVVVVGGGGGKVVVVV-- 63

Query: 101 AGGGGLPVVLDGAGGGGLPVVLDGTGGGGLPVVLDGGGG------GGGGAPSVVFNGGGG 155
            GGGG  VV+   GGGG  VV+ G GGG + VV+ GGGG      GGGG   VV  GGGG
Sbjct: 64  -GGGGGKVVVVVGGGGGKVVVVVGGGGGKVVVVVGGGGGKVVVVVGGGGGKVVVVVGGGG 120

BLAST of CmoCh04G014390.1 vs. NCBI nr
Match: gi|659092081|ref|XP_008446890.1| (PREDICTED: serine, glycine, tyrosine and glutamine-rich protein-like isoform X1 [Cucumis melo])

HSP 1 Score: 106.7 bits (265), Expect = 3.9e-20
Identity = 80/125 (64.00%), Postives = 91/125 (72.80%), Query Frame = 1

Query: 42  FVPGAGGGDELTSGEGAGG-EMLVSGGGGGLSVVFDGGGGG-LPVVLDGGGGGGLPVVLD 101
           F  G GGGDEL   +G GG  +++ GGGGG+SVVFDGGGGG + VV DGGGGGG+ VV D
Sbjct: 14  FGGGGGGGDELVVLDGGGGVSVVLDGGGGGVSVVFDGGGGGGVSVVFDGGGGGGVSVVFD 73

Query: 102 GAGGGGLPVVLDGAGGGGLPVVLDGTGGGGLPVVLDGGG--------GGGGGAPSVVFNG 157
           G GGGG+ VVLDG GGGG+ VV DG GGGG+ VV DGGG        GGGGG  SVV +G
Sbjct: 74  GGGGGGVLVVLDGGGGGGVSVVFDG-GGGGVSVVFDGGGGGVSVMLDGGGGGGVSVVLDG 133

BLAST of CmoCh04G014390.1 vs. NCBI nr
Match: gi|659092083|ref|XP_008446891.1| (PREDICTED: serine, glycine, tyrosine and glutamine-rich protein-like isoform X2 [Cucumis melo])

HSP 1 Score: 101.7 bits (252), Expect = 1.2e-18
Identity = 77/117 (65.81%), Postives = 89/117 (76.07%), Query Frame = 1

Query: 42  FVPGAGGGDELTSGEGAGG-EMLVSGGGGGLSVVFD-GGGGGLPVVLDGGGGGGLPVVLD 101
           F  G GGGDEL   +G GG  +++ GGGGG+SVVFD GGGGG+ VV DGGGGGG+ VV D
Sbjct: 14  FGGGGGGGDELVVLDGGGGVSVVLDGGGGGVSVVFDGGGGGGVSVVFDGGGGGGVSVVFD 73

Query: 102 GAGGGGLPVVLDGAGGGGLPVVLDGTGGGGLPVVLDGGGGGGGGAPSVVFNGGGGGG 157
           G GGGG+ VV DG GGGG+ VV DG GGGG+ V+LDGGGGGG    SVV +GGGGGG
Sbjct: 74  GGGGGGVSVVFDG-GGGGVSVVFDG-GGGGVSVMLDGGGGGG---VSVVLDGGGGGG 125

BLAST of CmoCh04G014390.1 vs. NCBI nr
Match: gi|62001501|gb|AAX58457.1| (HrpW [Pseudomonas viridiflava])

HSP 1 Score: 64.3 bits (155), Expect = 2.2e-07
Identity = 64/106 (60.38%), Postives = 66/106 (62.26%), Query Frame = 1

Query: 54  SGEGAGGEMLVSGGGGGLSVVFDGGGGGLPVVLDGGGGGGLPVVLDGAGGGGLPVVLDGA 113
           +G+G GG     GGGG  SV   GGGGG P V  GGGGGG P V  G GGGG P V  G 
Sbjct: 244 AGKGGGG-----GGGGTPSVGGGGGGGGTPSVGGGGGGGGTPSVGGGGGGGGTPSVGGGG 303

Query: 114 GGGGLPVVLDGTGGGGLPVVLDGGGGGGGGAPSVVFNGGGGGGGDA 160
           GGGG P V  G GGGG P V  GGGGGGGG PSV   GGGGGG  A
Sbjct: 304 GGGGTPSVGGGGGGGGTPSV--GGGGGGGGTPSV---GGGGGGTPA 339

BLAST of CmoCh04G014390.1 vs. NCBI nr
Match: gi|17221667|gb|AAL36454.1|AF162332_1 (circumsporozoite protein [Plasmodium vinckei petteri])

HSP 1 Score: 64.3 bits (155), Expect = 2.2e-07
Identity = 75/139 (53.96%), Postives = 82/139 (58.99%), Query Frame = 1

Query: 35  PFSFNALFVPGAGGGDELTSGEGAGGEMLVSGGGGGLSV---VFDGGGGGL---PVVLDG 94
           P +  A  V G GGG     G G     +V GGGGG      V DGGGGG    P V+DG
Sbjct: 148 PAAAAAAVVDGGGGG-----GGGGQDPPVVDGGGGGGGQDPPVVDGGGGGGGQDPPVVDG 207

Query: 95  GGGGGL--PVVLDGAGGGGL--PVVLDGAGGGGL--PVVLDGTGGGGL--PVVLDGGGGG 154
           GGGGG   P V+DG GGGG   P V+DG GGGG   P V+DG GGGG   P V+DGGGGG
Sbjct: 208 GGGGGGQDPPVVDGGGGGGGQDPPVVDGGGGGGGQDPPVVDGGGGGGGQDPPVVDGGGGG 267

Query: 155 GGGAPSVVFNGGGGGGGDA 160
           GG  P VV  GGG GG DA
Sbjct: 268 GGQDPPVVDGGGGRGGQDA 281

BLAST of CmoCh04G014390.1 vs. NCBI nr
Match: gi|443707736|gb|ELU03205.1| (hypothetical protein CAPTEDRAFT_195602 [Capitella teleta])

HSP 1 Score: 60.8 bits (146), Expect = 2.4e-06
Identity = 62/120 (51.67%), Postives = 72/120 (60.00%), Query Frame = 1

Query: 41  LFVPGAGGGDELTSGEGAGGEMLVSGGGGGLSVVFDGGGGGLPVVLDGGGGGGLPVVLDG 100
           LF  G GG   +  G G G  ++V GGGGG  VV  GGGGG  VV+ GGGGG + VV+  
Sbjct: 4   LFYSGGGGKVVVVVGGGGGKVVVVVGGGGGKVVVVVGGGGGKVVVVVGGGGGKVVVVV-- 63

Query: 101 AGGGGLPVVLDGAGGGGLPVVLDGTGGGGLPVVLDGGGG------GGGGAPSVVFNGGGG 155
            GGGG  VV+   GGGG  VV+ G GGG + VV+ GGGG      GGGG   VV  GGGG
Sbjct: 64  -GGGGGKVVVVVGGGGGKVVVVVGGGGGKVVVVVGGGGGKVVVVVGGGGGKVVVVVGGGG 120

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A8E425_PSEVI1.5e-0760.38HrpW OS=Pseudomonas viridiflava GN=hrpW PE=4 SV=1[more]
Q8WSL3_PLAVN1.5e-0753.96Circumsporozoite protein OS=Plasmodium vinckei petteri GN=CS PE=4 SV=1[more]
R7UA08_CAPTE1.7e-0651.67Uncharacterized protein OS=Capitella teleta GN=CAPTEDRAFT_195602 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
gi|659092081|ref|XP_008446890.1|3.9e-2064.00PREDICTED: serine, glycine, tyrosine and glutamine-rich protein-like isoform X1 ... [more]
gi|659092083|ref|XP_008446891.1|1.2e-1865.81PREDICTED: serine, glycine, tyrosine and glutamine-rich protein-like isoform X2 ... [more]
gi|62001501|gb|AAX58457.1|2.2e-0760.38HrpW [Pseudomonas viridiflava][more]
gi|17221667|gb|AAL36454.1|AF162332_12.2e-0753.96circumsporozoite protein [Plasmodium vinckei petteri][more]
gi|443707736|gb|ELU03205.1|2.4e-0651.67hypothetical protein CAPTEDRAFT_195602 [Capitella teleta][more]
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmoCh04G014390CmoCh04G014390gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmoCh04G014390.1CmoCh04G014390.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh04G014390.1.exon.1CmoCh04G014390.1.exon.1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh04G014390.1.CDS.1CmoCh04G014390.1.CDS.1CDS