CmoCh04G014390 (gene) Cucurbita moschata (Rifu)

NameCmoCh04G014390
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr04 : 7364763 .. 7365245 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAAATGAATCCTAAGAATCCCAACAAGCCTGCTCCTATAATCACTCCAAACGCAATGCCTGCCTTTTGTCCGCCACTCAGTCCTTTTGAATCTGCACCACCCTTTTCATTCAATGCTTTGTTCGTGCCCGGCGCCGGCGGCGGAGATGAGCTTACGTCAGGCGAAGGTGCGGGTGGTGAGATGTTGGTGTCGGGTGGCGGTGGTGGACTCTCAGTGGTATTTGATGGTGGCGGAGGCGGACTGCCAGTTGTGTTGGATGGCGGCGGCGGAGGTGGACTGCCAGTTGTGTTGGATGGCGCTGGCGGAGGTGGACTGCCAGTTGTGTTGGATGGCGCTGGCGGAGGTGGGCTGCCAGTTGTGTTGGATGGCACTGGCGGAGGTGGACTGCCAGTTGTGTTGGATGGCGGCGGCGGCGGCGGCGGCGGTGCACCATCGGTTGTATTCAACGGCGGCGGTGGAGGAGGAGGAGATGCATCTTGA

mRNA sequence

ATGCAAATGAATCCTAAGAATCCCAACAAGCCTGCTCCTATAATCACTCCAAACGCAATGCCTGCCTTTTGTCCGCCACTCAGTCCTTTTGAATCTGCACCACCCTTTTCATTCAATGCTTTGTTCGTGCCCGGCGCCGGCGGCGGAGATGAGCTTACGTCAGGCGAAGGTGCGGGTGGTGAGATGTTGGTGTCGGGTGGCGGTGGTGGACTCTCAGTGGTATTTGATGGTGGCGGAGGCGGACTGCCAGTTGTGTTGGATGGCGGCGGCGGAGGTGGACTGCCAGTTGTGTTGGATGGCGCTGGCGGAGGTGGACTGCCAGTTGTGTTGGATGGCGCTGGCGGAGGTGGGCTGCCAGTTGTGTTGGATGGCACTGGCGGAGGTGGACTGCCAGTTGTGTTGGATGGCGGCGGCGGCGGCGGCGGCGGTGCACCATCGGTTGTATTCAACGGCGGCGGTGGAGGAGGAGGAGATGCATCTTGA

Coding sequence (CDS)

ATGCAAATGAATCCTAAGAATCCCAACAAGCCTGCTCCTATAATCACTCCAAACGCAATGCCTGCCTTTTGTCCGCCACTCAGTCCTTTTGAATCTGCACCACCCTTTTCATTCAATGCTTTGTTCGTGCCCGGCGCCGGCGGCGGAGATGAGCTTACGTCAGGCGAAGGTGCGGGTGGTGAGATGTTGGTGTCGGGTGGCGGTGGTGGACTCTCAGTGGTATTTGATGGTGGCGGAGGCGGACTGCCAGTTGTGTTGGATGGCGGCGGCGGAGGTGGACTGCCAGTTGTGTTGGATGGCGCTGGCGGAGGTGGACTGCCAGTTGTGTTGGATGGCGCTGGCGGAGGTGGGCTGCCAGTTGTGTTGGATGGCACTGGCGGAGGTGGACTGCCAGTTGTGTTGGATGGCGGCGGCGGCGGCGGCGGCGGTGCACCATCGGTTGTATTCAACGGCGGCGGTGGAGGAGGAGGAGATGCATCTTGA
BLAST of CmoCh04G014390 vs. TrEMBL
Match: A8E425_PSEVI (HrpW OS=Pseudomonas viridiflava GN=hrpW PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.5e-07
Identity = 64/106 (60.38%), Postives = 66/106 (62.26%), Query Frame = 1

Query: 54  SGEGAGGEMLVSGGGGGLSVVFDGGGGGLPVVLDGGGGGGLPVVLDGAGGGGLPVVLDGA 113
           +G+G GG     GGGG  SV   GGGGG P V  GGGGGG P V  G GGGG P V  G 
Sbjct: 244 AGKGGGG-----GGGGTPSVGGGGGGGGTPSVGGGGGGGGTPSVGGGGGGGGTPSVGGGG 303

Query: 114 GGGGLPVVLDGTGGGGLPVVLDGGGGGGGGAPSVVFNGGGGGGGDA 160
           GGGG P V  G GGGG P V  GGGGGGGG PSV   GGGGGG  A
Sbjct: 304 GGGGTPSVGGGGGGGGTPSV--GGGGGGGGTPSV---GGGGGGTPA 339

BLAST of CmoCh04G014390 vs. TrEMBL
Match: Q8WSL3_PLAVN (Circumsporozoite protein OS=Plasmodium vinckei petteri GN=CS PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.5e-07
Identity = 75/139 (53.96%), Postives = 82/139 (58.99%), Query Frame = 1

Query: 35  PFSFNALFVPGAGGGDELTSGEGAGGEMLVSGGGGGLSV---VFDGGGGGL---PVVLDG 94
           P +  A  V G GGG     G G     +V GGGGG      V DGGGGG    P V+DG
Sbjct: 148 PAAAAAAVVDGGGGG-----GGGGQDPPVVDGGGGGGGQDPPVVDGGGGGGGQDPPVVDG 207

Query: 95  GGGGGL--PVVLDGAGGGGL--PVVLDGAGGGGL--PVVLDGTGGGGL--PVVLDGGGGG 154
           GGGGG   P V+DG GGGG   P V+DG GGGG   P V+DG GGGG   P V+DGGGGG
Sbjct: 208 GGGGGGQDPPVVDGGGGGGGQDPPVVDGGGGGGGQDPPVVDGGGGGGGQDPPVVDGGGGG 267

Query: 155 GGGAPSVVFNGGGGGGGDA 160
           GG  P VV  GGG GG DA
Sbjct: 268 GGQDPPVVDGGGGRGGQDA 281

BLAST of CmoCh04G014390 vs. TrEMBL
Match: R7UA08_CAPTE (Uncharacterized protein OS=Capitella teleta GN=CAPTEDRAFT_195602 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.7e-06
Identity = 62/120 (51.67%), Postives = 72/120 (60.00%), Query Frame = 1

Query: 41  LFVPGAGGGDELTSGEGAGGEMLVSGGGGGLSVVFDGGGGGLPVVLDGGGGGGLPVVLDG 100
           LF  G GG   +  G G G  ++V GGGGG  VV  GGGGG  VV+ GGGGG + VV+  
Sbjct: 4   LFYSGGGGKVVVVVGGGGGKVVVVVGGGGGKVVVVVGGGGGKVVVVVGGGGGKVVVVV-- 63

Query: 101 AGGGGLPVVLDGAGGGGLPVVLDGTGGGGLPVVLDGGGG------GGGGAPSVVFNGGGG 155
            GGGG  VV+   GGGG  VV+ G GGG + VV+ GGGG      GGGG   VV  GGGG
Sbjct: 64  -GGGGGKVVVVVGGGGGKVVVVVGGGGGKVVVVVGGGGGKVVVVVGGGGGKVVVVVGGGG 120

BLAST of CmoCh04G014390 vs. NCBI nr
Match: gi|659092081|ref|XP_008446890.1| (PREDICTED: serine, glycine, tyrosine and glutamine-rich protein-like isoform X1 [Cucumis melo])

HSP 1 Score: 106.7 bits (265), Expect = 3.9e-20
Identity = 80/125 (64.00%), Postives = 91/125 (72.80%), Query Frame = 1

Query: 42  FVPGAGGGDELTSGEGAGG-EMLVSGGGGGLSVVFDGGGGG-LPVVLDGGGGGGLPVVLD 101
           F  G GGGDEL   +G GG  +++ GGGGG+SVVFDGGGGG + VV DGGGGGG+ VV D
Sbjct: 14  FGGGGGGGDELVVLDGGGGVSVVLDGGGGGVSVVFDGGGGGGVSVVFDGGGGGGVSVVFD 73

Query: 102 GAGGGGLPVVLDGAGGGGLPVVLDGTGGGGLPVVLDGGG--------GGGGGAPSVVFNG 157
           G GGGG+ VVLDG GGGG+ VV DG GGGG+ VV DGGG        GGGGG  SVV +G
Sbjct: 74  GGGGGGVLVVLDGGGGGGVSVVFDG-GGGGVSVVFDGGGGGVSVMLDGGGGGGVSVVLDG 133

BLAST of CmoCh04G014390 vs. NCBI nr
Match: gi|659092083|ref|XP_008446891.1| (PREDICTED: serine, glycine, tyrosine and glutamine-rich protein-like isoform X2 [Cucumis melo])

HSP 1 Score: 101.7 bits (252), Expect = 1.2e-18
Identity = 77/117 (65.81%), Postives = 89/117 (76.07%), Query Frame = 1

Query: 42  FVPGAGGGDELTSGEGAGG-EMLVSGGGGGLSVVFD-GGGGGLPVVLDGGGGGGLPVVLD 101
           F  G GGGDEL   +G GG  +++ GGGGG+SVVFD GGGGG+ VV DGGGGGG+ VV D
Sbjct: 14  FGGGGGGGDELVVLDGGGGVSVVLDGGGGGVSVVFDGGGGGGVSVVFDGGGGGGVSVVFD 73

Query: 102 GAGGGGLPVVLDGAGGGGLPVVLDGTGGGGLPVVLDGGGGGGGGAPSVVFNGGGGGG 157
           G GGGG+ VV DG GGGG+ VV DG GGGG+ V+LDGGGGGG    SVV +GGGGGG
Sbjct: 74  GGGGGGVSVVFDG-GGGGVSVVFDG-GGGGVSVMLDGGGGGG---VSVVLDGGGGGG 125

BLAST of CmoCh04G014390 vs. NCBI nr
Match: gi|62001501|gb|AAX58457.1| (HrpW [Pseudomonas viridiflava])

HSP 1 Score: 64.3 bits (155), Expect = 2.2e-07
Identity = 64/106 (60.38%), Postives = 66/106 (62.26%), Query Frame = 1

Query: 54  SGEGAGGEMLVSGGGGGLSVVFDGGGGGLPVVLDGGGGGGLPVVLDGAGGGGLPVVLDGA 113
           +G+G GG     GGGG  SV   GGGGG P V  GGGGGG P V  G GGGG P V  G 
Sbjct: 244 AGKGGGG-----GGGGTPSVGGGGGGGGTPSVGGGGGGGGTPSVGGGGGGGGTPSVGGGG 303

Query: 114 GGGGLPVVLDGTGGGGLPVVLDGGGGGGGGAPSVVFNGGGGGGGDA 160
           GGGG P V  G GGGG P V  GGGGGGGG PSV   GGGGGG  A
Sbjct: 304 GGGGTPSVGGGGGGGGTPSV--GGGGGGGGTPSV---GGGGGGTPA 339

BLAST of CmoCh04G014390 vs. NCBI nr
Match: gi|17221667|gb|AAL36454.1|AF162332_1 (circumsporozoite protein [Plasmodium vinckei petteri])

HSP 1 Score: 64.3 bits (155), Expect = 2.2e-07
Identity = 75/139 (53.96%), Postives = 82/139 (58.99%), Query Frame = 1

Query: 35  PFSFNALFVPGAGGGDELTSGEGAGGEMLVSGGGGGLSV---VFDGGGGGL---PVVLDG 94
           P +  A  V G GGG     G G     +V GGGGG      V DGGGGG    P V+DG
Sbjct: 148 PAAAAAAVVDGGGGG-----GGGGQDPPVVDGGGGGGGQDPPVVDGGGGGGGQDPPVVDG 207

Query: 95  GGGGGL--PVVLDGAGGGGL--PVVLDGAGGGGL--PVVLDGTGGGGL--PVVLDGGGGG 154
           GGGGG   P V+DG GGGG   P V+DG GGGG   P V+DG GGGG   P V+DGGGGG
Sbjct: 208 GGGGGGQDPPVVDGGGGGGGQDPPVVDGGGGGGGQDPPVVDGGGGGGGQDPPVVDGGGGG 267

Query: 155 GGGAPSVVFNGGGGGGGDA 160
           GG  P VV  GGG GG DA
Sbjct: 268 GGQDPPVVDGGGGRGGQDA 281

BLAST of CmoCh04G014390 vs. NCBI nr
Match: gi|443707736|gb|ELU03205.1| (hypothetical protein CAPTEDRAFT_195602 [Capitella teleta])

HSP 1 Score: 60.8 bits (146), Expect = 2.4e-06
Identity = 62/120 (51.67%), Postives = 72/120 (60.00%), Query Frame = 1

Query: 41  LFVPGAGGGDELTSGEGAGGEMLVSGGGGGLSVVFDGGGGGLPVVLDGGGGGGLPVVLDG 100
           LF  G GG   +  G G G  ++V GGGGG  VV  GGGGG  VV+ GGGGG + VV+  
Sbjct: 4   LFYSGGGGKVVVVVGGGGGKVVVVVGGGGGKVVVVVGGGGGKVVVVVGGGGGKVVVVV-- 63

Query: 101 AGGGGLPVVLDGAGGGGLPVVLDGTGGGGLPVVLDGGGG------GGGGAPSVVFNGGGG 155
            GGGG  VV+   GGGG  VV+ G GGG + VV+ GGGG      GGGG   VV  GGGG
Sbjct: 64  -GGGGGKVVVVVGGGGGKVVVVVGGGGGKVVVVVGGGGGKVVVVVGGGGGKVVVVVGGGG 120

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A8E425_PSEVI1.5e-0760.38HrpW OS=Pseudomonas viridiflava GN=hrpW PE=4 SV=1[more]
Q8WSL3_PLAVN1.5e-0753.96Circumsporozoite protein OS=Plasmodium vinckei petteri GN=CS PE=4 SV=1[more]
R7UA08_CAPTE1.7e-0651.67Uncharacterized protein OS=Capitella teleta GN=CAPTEDRAFT_195602 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
gi|659092081|ref|XP_008446890.1|3.9e-2064.00PREDICTED: serine, glycine, tyrosine and glutamine-rich protein-like isoform X1 ... [more]
gi|659092083|ref|XP_008446891.1|1.2e-1865.81PREDICTED: serine, glycine, tyrosine and glutamine-rich protein-like isoform X2 ... [more]
gi|62001501|gb|AAX58457.1|2.2e-0760.38HrpW [Pseudomonas viridiflava][more]
gi|17221667|gb|AAL36454.1|AF162332_12.2e-0753.96circumsporozoite protein [Plasmodium vinckei petteri][more]
gi|443707736|gb|ELU03205.1|2.4e-0651.67hypothetical protein CAPTEDRAFT_195602 [Capitella teleta][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G014390.1CmoCh04G014390.1mRNA


The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh04G014390Cucumber (Gy14) v2cgybcmoB650
CmoCh04G014390Melon (DHL92) v3.6.1cmomedB720
CmoCh04G014390Melon (DHL92) v3.6.1cmomedB763
CmoCh04G014390Silver-seed gourdcarcmoB0366
CmoCh04G014390Silver-seed gourdcarcmoB0655
CmoCh04G014390Silver-seed gourdcarcmoB0939
CmoCh04G014390Silver-seed gourdcarcmoB1138
CmoCh04G014390Cucumber (Chinese Long) v3cmocucB0874
CmoCh04G014390Watermelon (97103) v2cmowmbB729
CmoCh04G014390Watermelon (97103) v2cmowmbB761
CmoCh04G014390Wax gourdcmowgoB0869
CmoCh04G014390Wax gourdcmowgoB0904
CmoCh04G014390Cucurbita moschata (Rifu)cmocmoB257
CmoCh04G014390Cucurbita moschata (Rifu)cmocmoB336
CmoCh04G014390Cucurbita moschata (Rifu)cmocmoB468
CmoCh04G014390Cucumber (Gy14) v1cgycmoB0382
CmoCh04G014390Cucumber (Gy14) v1cgycmoB0848
CmoCh04G014390Cucurbita maxima (Rimu)cmacmoB305
CmoCh04G014390Cucurbita maxima (Rimu)cmacmoB420
CmoCh04G014390Cucurbita maxima (Rimu)cmacmoB728
CmoCh04G014390Cucurbita maxima (Rimu)cmacmoB739
CmoCh04G014390Wild cucumber (PI 183967)cmocpiB745
CmoCh04G014390Wild cucumber (PI 183967)cmocpiB767
CmoCh04G014390Cucumber (Chinese Long) v2cmocuB738
CmoCh04G014390Cucumber (Chinese Long) v2cmocuB758
CmoCh04G014390Melon (DHL92) v3.5.1cmomeB631
CmoCh04G014390Melon (DHL92) v3.5.1cmomeB674
CmoCh04G014390Watermelon (Charleston Gray)cmowcgB654
CmoCh04G014390Watermelon (Charleston Gray)cmowcgB681
CmoCh04G014390Watermelon (97103) v1cmowmB662
CmoCh04G014390Watermelon (97103) v1cmowmB693
CmoCh04G014390Cucurbita pepo (Zucchini)cmocpeB651
CmoCh04G014390Cucurbita pepo (Zucchini)cmocpeB665
CmoCh04G014390Cucurbita pepo (Zucchini)cmocpeB673
CmoCh04G014390Cucurbita pepo (Zucchini)cmocpeB687
CmoCh04G014390Bottle gourd (USVL1VR-Ls)cmolsiB660
CmoCh04G014390Bottle gourd (USVL1VR-Ls)cmolsiB700