CmoCh04G012530.1 (mRNA) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G012530.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Unknown protein
Location	Cmo_Chr04 : 6352567 .. 6354834 (+)
Sequence length	561

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAACATGAAACAGCACAAAATTTGATAAACAAAGAACTGACAGTTACCTTTTACTGGTTGGGGTTGGGGACAGAGGGGTTGCCTAAGAATTTCACTATCCTGTTCAACAAATTCAACCCAAATACAGTTTCTTCACAGTTTACTTTCACAGTTACATGTAGGGGTTCTAAGCATTTTCCTTCAACAGTCAGCGAGACCAAGCACGGGAATGAGTTGCTCAGAATCTCGGCGCTGAACCGTAGGCACAAACCGGTTGCGTCGTCGAGAAAGTTAGCAACTGGGAGTTCCATGGATACTAGGAAAACGTTTGCATTGCCGAGCATCTTCAATGCCAAGCTCTTGCATATGCGAAGAAATTTATCTTCTTCTATTGGTCTCTCACTCTTTTCATCGTTAAGCTTCCCAAGGTGGTCAGTGAATGTGCATCTAAAGGACACAATACAGCCGAGTTAGAACAGCAAAGATATGGGGGCGTTTTTCGTCATCTAAATCATCTACTCATTCTGGATAACTTCCATTCGCTATAGAATTAAATTACCGATTTAAGTTTGTTTGTCTACGTCTAATTGGATGCACAAATACTTCTTCGGGGTGGGGGATTCAAAGTTGTATGAAGTTTGAGAGCACGGGAAATAATCTAGAACATAAAAGTATACAAATAAAAAAAAAGGGGCTTTATTGGAAAAACTATGCCAAGAAGGGGAAAGATGGATCCAAAAAATCCAACTGAAGGATGATATCGTTTGTTCATGCACGTACTTATAATATGTACAAAAATTAAATATCCTAAATGTAATAGCCAAACTCACCGCTAGCAGATATTGTCTTATTTGGGTTTTCCATTCTAGGCTTCTCCTCAAAGTTTTAAAACGAGTTCTAAAACATGTCTGCTAGGGAGAGGTTTCCACACCCTTATAAAGAATATTTTGTTCCTCTCTCCAACGTGGGTTCCTCTCTCCAACGTGGGATATCACACTAAATTATAGTGAAAAGAACCGGTGGTTGGATCTACTAACCTCCTCATGTACTCGAACATTCCTGGTAGCCGAGACTCCTTAGCTGTGAAGGCTTCATTGTCCATCGGAAGTGGCCTGACAAAATATCCAATGTCAGGGTGCAGCTTAACAGGATACATCTTGCCATTACAGTACAAATTTAACTTCATAGGCAAGAGGTGGTGATTGAATTGAGCCTCAAGAGTTCTCTTGATAGTCTGATCAGGTCCCAAAGAGGTAATTTTTTCCATGGAAACTGGCGTCATTACAGTGTTAATAGATGTAGAGGAGCTGAATTAACAAATTTAAAAGAAGTTAGGCACTATAAGGCATGCATGAAAACCTTAATATACGTCTAGATCTATCCATGCTTGATGATATGAACAAAGAACGGGCAAAACTAAATCTCACCTTTCACTTCCGACCCGAACTTCGTCTTTTGAATCTACAACTTTGTCAGATTCCTCGTGGGTCAACATAATTTCAGTCATAGACTCAGTAGAACAGTTTTTGAAGGATGCTTCAATACAAACATGAAGAGGAGATATATTTGAAGTCTGGGATGAAAATGAGTACTCCACCTTCAAGCCATCTCCTTCAGCAGAATCCAGGAGTTGATAGCTTTTGCGTGTCACATGTTTCCCAAGATCACCTATAGATATTCTAGCAGAGGAACTTCGAACTTCAGCCTTCTCTGAGGTACTTACAGTTGCTAAATTTGGCTGTTCATTCAGCCATGATTCTAGGGCGTTCCTTGACATCAATTCATCCAACTCTGAAGAACCAGAGGGAGAGGCTCCATTCTGAATGTTGTGAGAATTGACATGATCAGAAAGTTCAATCAAAGGATCAGCACCATCATTTTCCTGCGGATGATTTGCCCCATAACTTTCATCCCTGCCACTAGAACCACTGAAAGAAGGCTGAGAATTATAACCTGAAGCACTTTCCTCATCCAAGGATCCCGATGATGACTCTGTATTATCTGTCTCATATGAATTACTCTCAACTGCTCCATCTCTTGACGTACTTGCAGCTTTATCCAAGGTGCATGGTTTTGGAAGAGGTTCATAACCTGGCGCTGCATGAAAAACTATTTGTGAAAGAGATCCTGGAAGATAAAATCGATAATTGATAGGTTCGGGTTGTTTTGCTTTTAGTTGTCCTCCAAAAATGCGTTCTGCAAGTTTCCATGACCGATCTCTTGGTTTGGATCGACTCTCTTCAGGAACTTCCATATCCAAATGGGATGACAGGAGCTTTTGAATAA

mRNA sequence

ATGAAACATGAAACAGCACAAAATTTGATAAACAAAGAACTGACAGTTACCTTTTACTGGTTGGGGTTGGGGACAGAGGGGTTGCCTAAGAATTTCACTATCCTGTTCAACAAATTCAACCCAAATACAGTTTCTTCACAGTTTACTTTCACAGTTACATGTAGGGGTTCTAAGCATTTTCCTTCAACAGTCAGCGAGACCAAGCACGGGAATGAGTTGCTCAGAATCTCGGCGCTGAACCGTAGGCACAAACCGGTTGCGTCGTCGAGAAAGTTAGCAACTGGGAGTTCCATGGATACTAGGAAAACGTTTGCATTGCCGAGCATCTTCAATGCCAAGCTCTTGCATATGCGAAGAAATTTATCTTCTTCTATTGGTCTCTCACTCTTTTCATCGTTAAGCTTCCCAAGGTGGTCAGTGAATGTGCATCTAAAGGACACAATACAGCCGATTGTCCTCCAAAAATGCGTTCTGCAAGTTTCCATGACCGATCTCTTGGTTTGGATCGACTCTCTTCAGGAACTTCCATATCCAAATGGGATGACAGGAGCTTTTGAATAA

Coding sequence (CDS)

ATGAAACATGAAACAGCACAAAATTTGATAAACAAAGAACTGACAGTTACCTTTTACTGGTTGGGGTTGGGGACAGAGGGGTTGCCTAAGAATTTCACTATCCTGTTCAACAAATTCAACCCAAATACAGTTTCTTCACAGTTTACTTTCACAGTTACATGTAGGGGTTCTAAGCATTTTCCTTCAACAGTCAGCGAGACCAAGCACGGGAATGAGTTGCTCAGAATCTCGGCGCTGAACCGTAGGCACAAACCGGTTGCGTCGTCGAGAAAGTTAGCAACTGGGAGTTCCATGGATACTAGGAAAACGTTTGCATTGCCGAGCATCTTCAATGCCAAGCTCTTGCATATGCGAAGAAATTTATCTTCTTCTATTGGTCTCTCACTCTTTTCATCGTTAAGCTTCCCAAGGTGGTCAGTGAATGTGCATCTAAAGGACACAATACAGCCGATTGTCCTCCAAAAATGCGTTCTGCAAGTTTCCATGACCGATCTCTTGGTTTGGATCGACTCTCTTCAGGAACTTCCATATCCAAATGGGATGACAGGAGCTTTTGAATAA

Homology

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BLAST of CmoCh04G012530.1 vs. TrEMBL
Match: A0A0A9IZ11_ARUDO (Uncharacterized protein OS=Arundo donax PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 9.8e-06
Identity = 33/69 (47.83%), Postives = 40/69 (57.97%), Query Frame = 1


Query: 33  TILFNKFNPNTVSSQFTFTVTCRGSKHFPSTVSETKHGNELLRISALNRRHKPVASSRKL 92
           T LF +F  NTVSS+FT  V   G    PS     + G E+LRIS LN +HKP  SS   
Sbjct: 4   TTLFRRFRANTVSSEFTLAVRSSGPDTCPSATMVIRQGFEVLRISLLNLQHKPETSSTLK 63

Query: 93  ATGSSMDTR 102
            TG S++TR
Sbjct: 64  VTGISIETR 72

The following BLAST results are available for this feature:

BLAST of CmoCh04G012530.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh04G012530.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A9IZ11_ARUDO	9.8e-06	47.83	Uncharacterized protein OS=Arundo donax PE=4 SV=1	[more]

BLAST of CmoCh04G012530.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh04G012530.1 vs. NCBI nr


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh04G012530	CmoCh04G012530	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh04G012530.1	CmoCh04G012530.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh04G012530.1.exon.1	CmoCh04G012530.1.exon.1	exon
CmoCh04G012530.1.exon.2	CmoCh04G012530.1.exon.2	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh04G012530.1.CDS.1	CmoCh04G012530.1.CDS.1	CDS
CmoCh04G012530.1.CDS.2	CmoCh04G012530.1.CDS.2	CDS