CmoCh04G012530 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh04G012530
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr04 : 6352567 .. 6354834 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAACATGAAACAGCACAAAATTTGATAAACAAAGAACTGACAGTTACCTTTTACTGGTTGGGGTTGGGGACAGAGGGGTTGCCTAAGAATTTCACTATCCTGTTCAACAAATTCAACCCAAATACAGTTTCTTCACAGTTTACTTTCACAGTTACATGTAGGGGTTCTAAGCATTTTCCTTCAACAGTCAGCGAGACCAAGCACGGGAATGAGTTGCTCAGAATCTCGGCGCTGAACCGTAGGCACAAACCGGTTGCGTCGTCGAGAAAGTTAGCAACTGGGAGTTCCATGGATACTAGGAAAACGTTTGCATTGCCGAGCATCTTCAATGCCAAGCTCTTGCATATGCGAAGAAATTTATCTTCTTCTATTGGTCTCTCACTCTTTTCATCGTTAAGCTTCCCAAGGTGGTCAGTGAATGTGCATCTAAAGGACACAATACAGCCGAGTTAGAACAGCAAAGATATGGGGGCGTTTTTCGTCATCTAAATCATCTACTCATTCTGGATAACTTCCATTCGCTATAGAATTAAATTACCGATTTAAGTTTGTTTGTCTACGTCTAATTGGATGCACAAATACTTCTTCGGGGTGGGGGATTCAAAGTTGTATGAAGTTTGAGAGCACGGGAAATAATCTAGAACATAAAAGTATACAAATAAAAAAAAAGGGGCTTTATTGGAAAAACTATGCCAAGAAGGGGAAAGATGGATCCAAAAAATCCAACTGAAGGATGATATCGTTTGTTCATGCACGTACTTATAATATGTACAAAAATTAAATATCCTAAATGTAATAGCCAAACTCACCGCTAGCAGATATTGTCTTATTTGGGTTTTCCATTCTAGGCTTCTCCTCAAAGTTTTAAAACGAGTTCTAAAACATGTCTGCTAGGGAGAGGTTTCCACACCCTTATAAAGAATATTTTGTTCCTCTCTCCAACGTGGGTTCCTCTCTCCAACGTGGGATATCACACTAAATTATAGTGAAAAGAACCGGTGGTTGGATCTACTAACCTCCTCATGTACTCGAACATTCCTGGTAGCCGAGACTCCTTAGCTGTGAAGGCTTCATTGTCCATCGGAAGTGGCCTGACAAAATATCCAATGTCAGGGTGCAGCTTAACAGGATACATCTTGCCATTACAGTACAAATTTAACTTCATAGGCAAGAGGTGGTGATTGAATTGAGCCTCAAGAGTTCTCTTGATAGTCTGATCAGGTCCCAAAGAGGTAATTTTTTCCATGGAAACTGGCGTCATTACAGTGTTAATAGATGTAGAGGAGCTGAATTAACAAATTTAAAAGAAGTTAGGCACTATAAGGCATGCATGAAAACCTTAATATACGTCTAGATCTATCCATGCTTGATGATATGAACAAAGAACGGGCAAAACTAAATCTCACCTTTCACTTCCGACCCGAACTTCGTCTTTTGAATCTACAACTTTGTCAGATTCCTCGTGGGTCAACATAATTTCAGTCATAGACTCAGTAGAACAGTTTTTGAAGGATGCTTCAATACAAACATGAAGAGGAGATATATTTGAAGTCTGGGATGAAAATGAGTACTCCACCTTCAAGCCATCTCCTTCAGCAGAATCCAGGAGTTGATAGCTTTTGCGTGTCACATGTTTCCCAAGATCACCTATAGATATTCTAGCAGAGGAACTTCGAACTTCAGCCTTCTCTGAGGTACTTACAGTTGCTAAATTTGGCTGTTCATTCAGCCATGATTCTAGGGCGTTCCTTGACATCAATTCATCCAACTCTGAAGAACCAGAGGGAGAGGCTCCATTCTGAATGTTGTGAGAATTGACATGATCAGAAAGTTCAATCAAAGGATCAGCACCATCATTTTCCTGCGGATGATTTGCCCCATAACTTTCATCCCTGCCACTAGAACCACTGAAAGAAGGCTGAGAATTATAACCTGAAGCACTTTCCTCATCCAAGGATCCCGATGATGACTCTGTATTATCTGTCTCATATGAATTACTCTCAACTGCTCCATCTCTTGACGTACTTGCAGCTTTATCCAAGGTGCATGGTTTTGGAAGAGGTTCATAACCTGGCGCTGCATGAAAAACTATTTGTGAAAGAGATCCTGGAAGATAAAATCGATAATTGATAGGTTCGGGTTGTTTTGCTTTTAGTTGTCCTCCAAAAATGCGTTCTGCAAGTTTCCATGACCGATCTCTTGGTTTGGATCGACTCTCTTCAGGAACTTCCATATCCAAATGGGATGACAGGAGCTTTTGAATAA

mRNA sequence

ATGAAACATGAAACAGCACAAAATTTGATAAACAAAGAACTGACAGTTACCTTTTACTGGTTGGGGTTGGGGACAGAGGGGTTGCCTAAGAATTTCACTATCCTGTTCAACAAATTCAACCCAAATACAGTTTCTTCACAGTTTACTTTCACAGTTACATGTAGGGGTTCTAAGCATTTTCCTTCAACAGTCAGCGAGACCAAGCACGGGAATGAGTTGCTCAGAATCTCGGCGCTGAACCGTAGGCACAAACCGGTTGCGTCGTCGAGAAAGTTAGCAACTGGGAGTTCCATGGATACTAGGAAAACGTTTGCATTGCCGAGCATCTTCAATGCCAAGCTCTTGCATATGCGAAGAAATTTATCTTCTTCTATTGGTCTCTCACTCTTTTCATCGTTAAGCTTCCCAAGGTGGTCAGTGAATGTGCATCTAAAGGACACAATACAGCCGATTGTCCTCCAAAAATGCGTTCTGCAAGTTTCCATGACCGATCTCTTGGTTTGGATCGACTCTCTTCAGGAACTTCCATATCCAAATGGGATGACAGGAGCTTTTGAATAA

Coding sequence (CDS)

ATGAAACATGAAACAGCACAAAATTTGATAAACAAAGAACTGACAGTTACCTTTTACTGGTTGGGGTTGGGGACAGAGGGGTTGCCTAAGAATTTCACTATCCTGTTCAACAAATTCAACCCAAATACAGTTTCTTCACAGTTTACTTTCACAGTTACATGTAGGGGTTCTAAGCATTTTCCTTCAACAGTCAGCGAGACCAAGCACGGGAATGAGTTGCTCAGAATCTCGGCGCTGAACCGTAGGCACAAACCGGTTGCGTCGTCGAGAAAGTTAGCAACTGGGAGTTCCATGGATACTAGGAAAACGTTTGCATTGCCGAGCATCTTCAATGCCAAGCTCTTGCATATGCGAAGAAATTTATCTTCTTCTATTGGTCTCTCACTCTTTTCATCGTTAAGCTTCCCAAGGTGGTCAGTGAATGTGCATCTAAAGGACACAATACAGCCGATTGTCCTCCAAAAATGCGTTCTGCAAGTTTCCATGACCGATCTCTTGGTTTGGATCGACTCTCTTCAGGAACTTCCATATCCAAATGGGATGACAGGAGCTTTTGAATAA
Homology
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BLAST of CmoCh04G012530 vs. TrEMBL
Match: A0A0A9IZ11_ARUDO (Uncharacterized protein OS=Arundo donax PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 9.8e-06
Identity = 33/69 (47.83%), Postives = 40/69 (57.97%), Query Frame = 1 

Query: 33  TILFNKFNPNTVSSQFTFTVTCRGSKHFPSTVSETKHGNELLRISALNRRHKPVASSRKL 92
           T LF +F  NTVSS+FT  V   G    PS     + G E+LRIS LN +HKP  SS   
Sbjct: 4   TTLFRRFRANTVSSEFTLAVRSSGPDTCPSATMVIRQGFEVLRISLLNLQHKPETSSTLK 63

Query: 93  ATGSSMDTR 102
            TG S++TR
Sbjct: 64  VTGISIETR 72

The following BLAST results are available for this feature:
BLAST of CmoCh04G012530 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh04G012530 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A9IZ11_ARUDO9.8e-0647.83Uncharacterized protein OS=Arundo donax PE=4 SV=1[more]
BLAST of CmoCh04G012530 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh04G012530 vs. NCBI nr
Match NameE-valueIdentityDescription
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G012530.1CmoCh04G012530.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh04G012530Cucumber (Chinese Long) v3cmocucB0805
CmoCh04G012530Cucumber (Chinese Long) v3cmocucB0815
CmoCh04G012530Cucumber (Chinese Long) v3cmocucB0840
CmoCh04G012530Cucumber (Chinese Long) v3cmocucB0872
CmoCh04G012530Cucumber (Chinese Long) v3cmocucB0887
CmoCh04G012530Watermelon (97103) v2cmowmbB692
CmoCh04G012530Watermelon (97103) v2cmowmbB715
CmoCh04G012530Watermelon (97103) v2cmowmbB724
CmoCh04G012530Watermelon (97103) v2cmowmbB725
CmoCh04G012530Watermelon (97103) v2cmowmbB754
CmoCh04G012530Wax gourdcmowgoB0820
CmoCh04G012530Wax gourdcmowgoB0838
CmoCh04G012530Wax gourdcmowgoB0875
CmoCh04G012530Wax gourdcmowgoB0878
CmoCh04G012530Wax gourdcmowgoB0883
CmoCh04G012530Cucurbita moschata (Rifu)cmocmoB258
CmoCh04G012530Cucurbita moschata (Rifu)cmocmoB368
CmoCh04G012530Cucurbita moschata (Rifu)cmocmoB450
CmoCh04G012530Cucurbita moschata (Rifu)cmocmoB464
CmoCh04G012530Cucumber (Gy14) v1cgycmoB0475
CmoCh04G012530Cucurbita maxima (Rimu)cmacmoB306
CmoCh04G012530Cucurbita maxima (Rimu)cmacmoB728
CmoCh04G012530Cucurbita maxima (Rimu)cmacmoB730
CmoCh04G012530Wild cucumber (PI 183967)cmocpiB746
CmoCh04G012530Wild cucumber (PI 183967)cmocpiB756
CmoCh04G012530Cucumber (Chinese Long) v2cmocuB736
CmoCh04G012530Melon (DHL92) v3.5.1cmomeB644
CmoCh04G012530Melon (DHL92) v3.5.1cmomeB678
CmoCh04G012530Watermelon (Charleston Gray)cmowcgB675
CmoCh04G012530Watermelon (97103) v1cmowmB668
CmoCh04G012530Watermelon (97103) v1cmowmB672
CmoCh04G012530Cucurbita pepo (Zucchini)cmocpeB673
CmoCh04G012530Cucurbita pepo (Zucchini)cmocpeB675
CmoCh04G012530Cucurbita pepo (Zucchini)cmocpeB706
CmoCh04G012530Cucurbita pepo (Zucchini)cmocpeB711
CmoCh04G012530Bottle gourd (USVL1VR-Ls)cmolsiB620
CmoCh04G012530Bottle gourd (USVL1VR-Ls)cmolsiB653
CmoCh04G012530Bottle gourd (USVL1VR-Ls)cmolsiB669
CmoCh04G012530Cucumber (Gy14) v2cgybcmoB387
CmoCh04G012530Cucumber (Gy14) v2cgybcmoB651
CmoCh04G012530Cucumber (Gy14) v2cgybcmoB814
CmoCh04G012530Melon (DHL92) v3.6.1cmomedB734
CmoCh04G012530Melon (DHL92) v3.6.1cmomedB767
CmoCh04G012530Melon (DHL92) v3.6.1cmomedB799
CmoCh04G012530Silver-seed gourdcarcmoB0124
CmoCh04G012530Silver-seed gourdcarcmoB0368
CmoCh04G012530Silver-seed gourdcarcmoB0423
CmoCh04G012530Silver-seed gourdcarcmoB0923