CmoCh04G011800.1 (mRNA) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G011800.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Unknown protein
Location	Cmo_Chr04 : 6035770 .. 6039320 (-)
Sequence length	435

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTTGGAAAAAAACTGTTGGTAGGGGATTTACTTGTGATGAGGGTTTATAGGGGTGGGTTATAAAGTTAACACTCTAACGGATACGTAAGCATGAGTTGAAGCTAGTTTTCTTTTCGTTCGCGTTTGTTTGTTTTTTTATTCATACATGTTTCTCCTCGTATAGTTTGGTGCTTGAAGATTGATTGATCTTTCCTTCGTTATAATGATATGAATGATATGAATGAAATGATCTAATCATTCATGTTAGGCTTTTGGTTTTAGCCTTTGGGACTTCCATCGTATCATCATTATCGAGTTTTTATTTATGAGCTTTTTTTTTGGGTTAAAAAAGAAAAAGAAAATAAAGGTTTTTATCTTGTCCTAATTAGTAGATAGAAAGGTAAGGCTACAAATTTTGAGCCATTCTAGATTTGCAGTGATCCTTTTAACAAATTCTAAATTTAGGATGTGGACATACAGAATAGGCCAAACCCCAATTATTCATTTTTGTTCACATGCTGAATAAGAATGTAGCCCTTGTTTATGAATATCTATTTTATTTCGAAACCGAAAAAAATGTGTTTGATTATACCTCGGTAAAGTTCATCGAGAAACTCCCAATTATCGGTTGAGGTTTTTTTTGTCAAATCACATCAAGTGAAGCAAAGTTGGAGTAAAGATTTTAAAAATGTTACTGAATTCTCTCACATTGTGATTGAAGTAGTTTTTTAAGTGGACAACAAAAAGCCTCGATGAGGAAACATGGTTACTATTGAACCTTTTAGGGTTTGTCACCATTTGTTGAAACTCTAATTGTTGTCCTTTCGATTTGAATCACCATTTCTTTTCTTTTTTTTTCTTTTTGTTGGCTTATATGAGTTTTGGGTGTATTATTGGGATACCTTTGGGTAGAACCCAAATGTGAAAAACATTACAAAAACAAAGATGCTTTCTTGTTTGGTACGATTAAAACTGACATGCCATGCCTTCTCCTCCCCTCAAATACTGAAATATAGGCCTTCCTTTCCTCTTTTATGTTCAACGTCAAGACCCAAAATAAGCAGGATTACGACACTTAACGTCTACATATTTGAGTTTCGCTCAATGAATAAAATATCAATTACTTGTTTCAGAGATCGATGATGGTTCGATCCTATAAAATTAACTATAAAGAGAACATTTTATTGTTGTTGGTGTCAAGGTATTGATATAGATTAGAATTTTTAAATTGCGTGGTGACCTAAGATACCTATCTAACTAAATAAGACATGTAATGTACCTTCACAAGGAGTGAACCATGTGGTTAGGTTGTCTGTTAGTATTTTCATAGTCCAAAGCTAACACACATGTCGTGACAAACAACTCCATAGATTAAAATTCATATATGTCCTTGAATCAGTAGTTGAAAGTTGTCCAAAATTTTTCTTAGTAGAACTCGCTTTAACTCATTACATATTACCCCGTCAGCCTCACGATTTTAAAATCCATATCCTAAGAAGAGATTTCCACGTACTTCGTTTCCCTCCCTAATCAATATGAGATTTCACATTTATTACGTCATTTTAAAAGTTTAAAGATTTATTAAATATCTCATAAAAAAAAAGATGAAAAGGAGAGAAAAAAGAAAAGGCGCAAAAGCTTCATGAAAAAAGCAGAAAAAGACAGAAATGTACAGAAGGGGCGTGGGATTGAAAAGTACAAAGCAAAGGCAAGTGGGGATTGGAAGGGAAATTCCGTTCAAATTTAATCCAAACAAAACAAAACACACCACACATTCATTTCATAACTTTCTCCTTACATTTTAAACGTGCTCTTTCTTTCTTTCCTTTTTTCCCATCATGTCTTATGGGTTTCGACCATAACTTTCCATTATCTTCCTCCTCATCCAAACCATTCGACGTTTCGTTTAGCTCTTAAAATCTTCAAATTTATTTCAAAAGACACGTTTTAAAAGCTTTTCGATTCGTTAGACTCCGTGACTAAAAGTAACATGGCATAACATAGCAGCTCATGCTTATATGAAAACATGCTTCACATCATTTAAAATATCATTTTCATTTATACCCAGTTGGTGTCTAATAATTTTGTTTTCTTTATTTATATTAGTGAATGGTTGAATATTAAAATTTTTAAAGCTAAAAAATTAAAAATAAATAGACATAAATTTTAAATAATGTGTATTTGAGAAAGATTATGTATTTAATTTCAATTTATTGACGAACATGTTTTTATACATTTTCTCCATTTATGAAAAGTTTATCTCATCACACTTGCGTGCACCAAATAAAGGGAAAATACACAAAAATGGACCCAAAAATCATATATATATATATAATTTATAATTTTTTAAATTTAAAGACTAAATTAATTAATTTTATTAAAAATGCATGCTTGTTTATGGTTTTTAATGAAAACTTAATGTTGATGATATTTTATATTTGGAGGGTTAATTAGGTTAATTAATTAGGATTAGTATTTAAATGAAATTAGGAAAAGAAAAGAGAGAGAGCATCTTATTGTGAACAGAATGGGGTTTTTCAGGAAATGGAATTTCTTTACACCAAAAAACAAAAATCCCCGTCAACAACAAATTCAACCGAAGGTTAAATTCTATAAATATTTTTTAACCTTTTTATTTTATTTTTTATTTTTTTAATATTTTAAAAACAATTTATTATCTTAGTAGGTTACTGTGGTACTAAGATATACAGTTCACTGTAAGAATTGTATAAACCAAATCAAGAAATGTGTCCAAAGATTGAAAGGTATGCTATTAATTTAATTTAATGACTAAAAAGTTAAATTATATATGTATGGTAAAACGTGTCGGTTAGTGAGAGATTTTTACGGTAAAAATGTCTTGTTTTCCTCCCCAATCGAAGTGTGATTTCACTATCTACCATATTTCGGGTCAGCATTCCTTTCTCCAATTGATGTGGGACTCCCAATTCATTATTTTTTTGGGGGCAGCATCCTTGTTGGCACACCGCCTCTTGTCCACCTCCCTTTGAAGCTCGATCGTTCAGTGTCTAACTCGGATGTCATTTATAACGACTCAAGTCCACCACTGACAGATATTATTCTCTTTAAATTTTTACATACGAATTTTTTAAAATGCGTCAGCTAGAAAGAGGTTGTCAAACCTAATGTTTAATTCTCATCCTCAACCGTGTTTGAAGGGGTTGAAAGTGCAGAAGTTGACGAGGAGAACCCTGAGCTGATAACAGTAAAGGGAGTGTTTGAAGTGCAAAAGCTTGTGGCCCACGTCCGAAGAGGAGTCGATAAAATCGTCACCGTTATCAAAGAAGAAAACGCCGCCGGAGGAGGCAGCGGTGGCGGGGAAGAAGGAATAGAAGCTGCCGCTGCCGGAGGAGGCAGCGAACAAAAAATAGAAATTGCCGCTGCCGGAGATGGCAGGGAACAAAAGATAGAAATTGCCGCTGCCGGAGGTGGCAAGGAACAAAAAATAGAAGTTGCCGCTGCCGGTGGAGGCAAGGAACAACAAATAGAAGTTGTCGGAGGAGCCGATGAGATCGAAGAAGTGGAAACATATTTTGATGCTTTGTAA

mRNA sequence

ATGTCTTGGAAAAAAACTGTTGGTAGGGGATTTACTTGTGATGAGGGGGTTGAAAGTGCAGAAGTTGACGAGGAGAACCCTGAGCTGATAACAGTAAAGGGAGTGTTTGAAGTGCAAAAGCTTGTGGCCCACGTCCGAAGAGGAGTCGATAAAATCGTCACCGTTATCAAAGAAGAAAACGCCGCCGGAGGAGGCAGCGGTGGCGGGGAAGAAGGAATAGAAGCTGCCGCTGCCGGAGGAGGCAGCGAACAAAAAATAGAAATTGCCGCTGCCGGAGATGGCAGGGAACAAAAGATAGAAATTGCCGCTGCCGGAGGTGGCAAGGAACAAAAAATAGAAGTTGCCGCTGCCGGTGGAGGCAAGGAACAACAAATAGAAGTTGTCGGAGGAGCCGATGAGATCGAAGAAGTGGAAACATATTTTGATGCTTTGTAA

Coding sequence (CDS)

ATGTCTTGGAAAAAAACTGTTGGTAGGGGATTTACTTGTGATGAGGGGGTTGAAAGTGCAGAAGTTGACGAGGAGAACCCTGAGCTGATAACAGTAAAGGGAGTGTTTGAAGTGCAAAAGCTTGTGGCCCACGTCCGAAGAGGAGTCGATAAAATCGTCACCGTTATCAAAGAAGAAAACGCCGCCGGAGGAGGCAGCGGTGGCGGGGAAGAAGGAATAGAAGCTGCCGCTGCCGGAGGAGGCAGCGAACAAAAAATAGAAATTGCCGCTGCCGGAGATGGCAGGGAACAAAAGATAGAAATTGCCGCTGCCGGAGGTGGCAAGGAACAAAAAATAGAAGTTGCCGCTGCCGGTGGAGGCAAGGAACAACAAATAGAAGTTGTCGGAGGAGCCGATGAGATCGAAGAAGTGGAAACATATTTTGATGCTTTGTAA

Homology

[Close]

BLAST of CmoCh04G011800.1 vs. TrEMBL
Match: A0A0A0KDJ7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G094160 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 3.9e-10
Identity = 43/70 (61.43%), Postives = 54/70 (77.14%), Query Frame = 1


Query: 15 EGVESAEVDEENPELITVKGVFEVQKLVAHVRRGVDKIVTVIKEENAAGGGSGGGEEGIE 74
          +GV SAE+D+E PELITVKGVFEV+KL+AH+RRGV+KI TVIKEE A+ GG     E  +
Sbjct: 2  KGVISAEIDKEVPELITVKGVFEVKKLLAHIRRGVEKIATVIKEEPASAGG-----EDQQ 61

Query: 75 AAAAGGGSEQ 85
            AAG G+ +
Sbjct: 62 REAAGEGTSR 66

[Close]

BLAST of CmoCh04G011800.1 vs. NCBI nr
Match: gi|778722058|ref|XP_011658396.1| (PREDICTED: uncharacterized protein LOC105435985 [Cucumis sativus])

HSP 1 Score: 76.6 bits (187), Expect = 3.8e-11
Identity = 49/87 (56.32%), Postives = 63/87 (72.41%), Query Frame = 1


Query: 15  EGVESAEVDEENPELITVKGVFEVQKLVAHVRRGVDKIVTVIKEENAAGGGSGGGEEGIE 74
           +GV SAE+D+E PELITVKGVFEV+KL+AH+RRGV+KI TVIKEE A+ GG     E  +
Sbjct: 9   KGVISAEIDKEVPELITVKGVFEVKKLLAHIRRGVEKIATVIKEEPASAGG-----EDQQ 68

Query: 75  AAAAGGGSEQKIEIAAAGDGREQKIEI 102
             AAG G+ +  E+AA  D   +K+ I
Sbjct: 69  REAAGEGTSRVEEVAA--DMENKKVVI 88

[Close]

BLAST of CmoCh04G011800.1 vs. NCBI nr
Match: gi|700191243|gb|KGN46447.1| (hypothetical protein Csa_6G094160 [Cucumis sativus])

HSP 1 Score: 72.8 bits (177), Expect = 5.6e-10
Identity = 43/70 (61.43%), Postives = 54/70 (77.14%), Query Frame = 1


Query: 15 EGVESAEVDEENPELITVKGVFEVQKLVAHVRRGVDKIVTVIKEENAAGGGSGGGEEGIE 74
          +GV SAE+D+E PELITVKGVFEV+KL+AH+RRGV+KI TVIKEE A+ GG     E  +
Sbjct: 2  KGVISAEIDKEVPELITVKGVFEVKKLLAHIRRGVEKIATVIKEEPASAGG-----EDQQ 61

Query: 75 AAAAGGGSEQ 85
            AAG G+ +
Sbjct: 62 REAAGEGTSR 66

The following BLAST results are available for this feature:

BLAST of CmoCh04G011800.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh04G011800.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KDJ7_CUCSA	3.9e-10	61.43	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G094160 PE=4 SV=1	[more]

BLAST of CmoCh04G011800.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh04G011800.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778722058\|ref\|XP_011658396.1\|	3.8e-11	56.32	PREDICTED: uncharacterized protein LOC105435985 [Cucumis sativus]	[more]
gi\|700191243\|gb\|KGN46447.1\|	5.6e-10	61.43	hypothetical protein Csa_6G094160 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh04G011800	CmoCh04G011800	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh04G011800.1	CmoCh04G011800.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh04G011800.1.CDS.2	CmoCh04G011800.1.CDS.2	CDS
CmoCh04G011800.1.CDS.1	CmoCh04G011800.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh04G011800.1.exon.2	CmoCh04G011800.1.exon.2	exon
CmoCh04G011800.1.exon.1	CmoCh04G011800.1.exon.1	exon