CmoCh04G011800 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh04G011800
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr04 : 6035770 .. 6039320 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTTGGAAAAAAACTGTTGGTAGGGGATTTACTTGTGATGAGGGTTTATAGGGGTGGGTTATAAAGTTAACACTCTAACGGATACGTAAGCATGAGTTGAAGCTAGTTTTCTTTTCGTTCGCGTTTGTTTGTTTTTTTATTCATACATGTTTCTCCTCGTATAGTTTGGTGCTTGAAGATTGATTGATCTTTCCTTCGTTATAATGATATGAATGATATGAATGAAATGATCTAATCATTCATGTTAGGCTTTTGGTTTTAGCCTTTGGGACTTCCATCGTATCATCATTATCGAGTTTTTATTTATGAGCTTTTTTTTTGGGTTAAAAAAGAAAAAGAAAATAAAGGTTTTTATCTTGTCCTAATTAGTAGATAGAAAGGTAAGGCTACAAATTTTGAGCCATTCTAGATTTGCAGTGATCCTTTTAACAAATTCTAAATTTAGGATGTGGACATACAGAATAGGCCAAACCCCAATTATTCATTTTTGTTCACATGCTGAATAAGAATGTAGCCCTTGTTTATGAATATCTATTTTATTTCGAAACCGAAAAAAATGTGTTTGATTATACCTCGGTAAAGTTCATCGAGAAACTCCCAATTATCGGTTGAGGTTTTTTTTGTCAAATCACATCAAGTGAAGCAAAGTTGGAGTAAAGATTTTAAAAATGTTACTGAATTCTCTCACATTGTGATTGAAGTAGTTTTTTAAGTGGACAACAAAAAGCCTCGATGAGGAAACATGGTTACTATTGAACCTTTTAGGGTTTGTCACCATTTGTTGAAACTCTAATTGTTGTCCTTTCGATTTGAATCACCATTTCTTTTCTTTTTTTTTCTTTTTGTTGGCTTATATGAGTTTTGGGTGTATTATTGGGATACCTTTGGGTAGAACCCAAATGTGAAAAACATTACAAAAACAAAGATGCTTTCTTGTTTGGTACGATTAAAACTGACATGCCATGCCTTCTCCTCCCCTCAAATACTGAAATATAGGCCTTCCTTTCCTCTTTTATGTTCAACGTCAAGACCCAAAATAAGCAGGATTACGACACTTAACGTCTACATATTTGAGTTTCGCTCAATGAATAAAATATCAATTACTTGTTTCAGAGATCGATGATGGTTCGATCCTATAAAATTAACTATAAAGAGAACATTTTATTGTTGTTGGTGTCAAGGTATTGATATAGATTAGAATTTTTAAATTGCGTGGTGACCTAAGATACCTATCTAACTAAATAAGACATGTAATGTACCTTCACAAGGAGTGAACCATGTGGTTAGGTTGTCTGTTAGTATTTTCATAGTCCAAAGCTAACACACATGTCGTGACAAACAACTCCATAGATTAAAATTCATATATGTCCTTGAATCAGTAGTTGAAAGTTGTCCAAAATTTTTCTTAGTAGAACTCGCTTTAACTCATTACATATTACCCCGTCAGCCTCACGATTTTAAAATCCATATCCTAAGAAGAGATTTCCACGTACTTCGTTTCCCTCCCTAATCAATATGAGATTTCACATTTATTACGTCATTTTAAAAGTTTAAAGATTTATTAAATATCTCATAAAAAAAAAGATGAAAAGGAGAGAAAAAAGAAAAGGCGCAAAAGCTTCATGAAAAAAGCAGAAAAAGACAGAAATGTACAGAAGGGGCGTGGGATTGAAAAGTACAAAGCAAAGGCAAGTGGGGATTGGAAGGGAAATTCCGTTCAAATTTAATCCAAACAAAACAAAACACACCACACATTCATTTCATAACTTTCTCCTTACATTTTAAACGTGCTCTTTCTTTCTTTCCTTTTTTCCCATCATGTCTTATGGGTTTCGACCATAACTTTCCATTATCTTCCTCCTCATCCAAACCATTCGACGTTTCGTTTAGCTCTTAAAATCTTCAAATTTATTTCAAAAGACACGTTTTAAAAGCTTTTCGATTCGTTAGACTCCGTGACTAAAAGTAACATGGCATAACATAGCAGCTCATGCTTATATGAAAACATGCTTCACATCATTTAAAATATCATTTTCATTTATACCCAGTTGGTGTCTAATAATTTTGTTTTCTTTATTTATATTAGTGAATGGTTGAATATTAAAATTTTTAAAGCTAAAAAATTAAAAATAAATAGACATAAATTTTAAATAATGTGTATTTGAGAAAGATTATGTATTTAATTTCAATTTATTGACGAACATGTTTTTATACATTTTCTCCATTTATGAAAAGTTTATCTCATCACACTTGCGTGCACCAAATAAAGGGAAAATACACAAAAATGGACCCAAAAATCATATATATATATATAATTTATAATTTTTTAAATTTAAAGACTAAATTAATTAATTTTATTAAAAATGCATGCTTGTTTATGGTTTTTAATGAAAACTTAATGTTGATGATATTTTATATTTGGAGGGTTAATTAGGTTAATTAATTAGGATTAGTATTTAAATGAAATTAGGAAAAGAAAAGAGAGAGAGCATCTTATTGTGAACAGAATGGGGTTTTTCAGGAAATGGAATTTCTTTACACCAAAAAACAAAAATCCCCGTCAACAACAAATTCAACCGAAGGTTAAATTCTATAAATATTTTTTAACCTTTTTATTTTATTTTTTATTTTTTTAATATTTTAAAAACAATTTATTATCTTAGTAGGTTACTGTGGTACTAAGATATACAGTTCACTGTAAGAATTGTATAAACCAAATCAAGAAATGTGTCCAAAGATTGAAAGGTATGCTATTAATTTAATTTAATGACTAAAAAGTTAAATTATATATGTATGGTAAAACGTGTCGGTTAGTGAGAGATTTTTACGGTAAAAATGTCTTGTTTTCCTCCCCAATCGAAGTGTGATTTCACTATCTACCATATTTCGGGTCAGCATTCCTTTCTCCAATTGATGTGGGACTCCCAATTCATTATTTTTTTGGGGGCAGCATCCTTGTTGGCACACCGCCTCTTGTCCACCTCCCTTTGAAGCTCGATCGTTCAGTGTCTAACTCGGATGTCATTTATAACGACTCAAGTCCACCACTGACAGATATTATTCTCTTTAAATTTTTACATACGAATTTTTTAAAATGCGTCAGCTAGAAAGAGGTTGTCAAACCTAATGTTTAATTCTCATCCTCAACCGTGTTTGAAGGGGTTGAAAGTGCAGAAGTTGACGAGGAGAACCCTGAGCTGATAACAGTAAAGGGAGTGTTTGAAGTGCAAAAGCTTGTGGCCCACGTCCGAAGAGGAGTCGATAAAATCGTCACCGTTATCAAAGAAGAAAACGCCGCCGGAGGAGGCAGCGGTGGCGGGGAAGAAGGAATAGAAGCTGCCGCTGCCGGAGGAGGCAGCGAACAAAAAATAGAAATTGCCGCTGCCGGAGATGGCAGGGAACAAAAGATAGAAATTGCCGCTGCCGGAGGTGGCAAGGAACAAAAAATAGAAGTTGCCGCTGCCGGTGGAGGCAAGGAACAACAAATAGAAGTTGTCGGAGGAGCCGATGAGATCGAAGAAGTGGAAACATATTTTGATGCTTTGTAA

mRNA sequence

ATGTCTTGGAAAAAAACTGTTGGTAGGGGATTTACTTGTGATGAGGGGGTTGAAAGTGCAGAAGTTGACGAGGAGAACCCTGAGCTGATAACAGTAAAGGGAGTGTTTGAAGTGCAAAAGCTTGTGGCCCACGTCCGAAGAGGAGTCGATAAAATCGTCACCGTTATCAAAGAAGAAAACGCCGCCGGAGGAGGCAGCGGTGGCGGGGAAGAAGGAATAGAAGCTGCCGCTGCCGGAGGAGGCAGCGAACAAAAAATAGAAATTGCCGCTGCCGGAGATGGCAGGGAACAAAAGATAGAAATTGCCGCTGCCGGAGGTGGCAAGGAACAAAAAATAGAAGTTGCCGCTGCCGGTGGAGGCAAGGAACAACAAATAGAAGTTGTCGGAGGAGCCGATGAGATCGAAGAAGTGGAAACATATTTTGATGCTTTGTAA

Coding sequence (CDS)

ATGTCTTGGAAAAAAACTGTTGGTAGGGGATTTACTTGTGATGAGGGGGTTGAAAGTGCAGAAGTTGACGAGGAGAACCCTGAGCTGATAACAGTAAAGGGAGTGTTTGAAGTGCAAAAGCTTGTGGCCCACGTCCGAAGAGGAGTCGATAAAATCGTCACCGTTATCAAAGAAGAAAACGCCGCCGGAGGAGGCAGCGGTGGCGGGGAAGAAGGAATAGAAGCTGCCGCTGCCGGAGGAGGCAGCGAACAAAAAATAGAAATTGCCGCTGCCGGAGATGGCAGGGAACAAAAGATAGAAATTGCCGCTGCCGGAGGTGGCAAGGAACAAAAAATAGAAGTTGCCGCTGCCGGTGGAGGCAAGGAACAACAAATAGAAGTTGTCGGAGGAGCCGATGAGATCGAAGAAGTGGAAACATATTTTGATGCTTTGTAA
Homology
[Close]
BLAST of CmoCh04G011800 vs. TrEMBL
Match: A0A0A0KDJ7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G094160 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 3.9e-10
Identity = 43/70 (61.43%), Postives = 54/70 (77.14%), Query Frame = 1 

Query: 15 EGVESAEVDEENPELITVKGVFEVQKLVAHVRRGVDKIVTVIKEENAAGGGSGGGEEGIE 74
          +GV SAE+D+E PELITVKGVFEV+KL+AH+RRGV+KI TVIKEE A+ GG     E  +
Sbjct: 2  KGVISAEIDKEVPELITVKGVFEVKKLLAHIRRGVEKIATVIKEEPASAGG-----EDQQ 61

Query: 75 AAAAGGGSEQ 85
            AAG G+ +
Sbjct: 62 REAAGEGTSR 66

[Close]
BLAST of CmoCh04G011800 vs. NCBI nr
Match: gi|778722058|ref|XP_011658396.1| (PREDICTED: uncharacterized protein LOC105435985 [Cucumis sativus])

HSP 1 Score: 76.6 bits (187), Expect = 3.8e-11
Identity = 49/87 (56.32%), Postives = 63/87 (72.41%), Query Frame = 1 

Query: 15  EGVESAEVDEENPELITVKGVFEVQKLVAHVRRGVDKIVTVIKEENAAGGGSGGGEEGIE 74
           +GV SAE+D+E PELITVKGVFEV+KL+AH+RRGV+KI TVIKEE A+ GG     E  +
Sbjct: 9   KGVISAEIDKEVPELITVKGVFEVKKLLAHIRRGVEKIATVIKEEPASAGG-----EDQQ 68

Query: 75  AAAAGGGSEQKIEIAAAGDGREQKIEI 102
             AAG G+ +  E+AA  D   +K+ I
Sbjct: 69  REAAGEGTSRVEEVAA--DMENKKVVI 88

[Close]
BLAST of CmoCh04G011800 vs. NCBI nr
Match: gi|700191243|gb|KGN46447.1| (hypothetical protein Csa_6G094160 [Cucumis sativus])

HSP 1 Score: 72.8 bits (177), Expect = 5.6e-10
Identity = 43/70 (61.43%), Postives = 54/70 (77.14%), Query Frame = 1 

Query: 15 EGVESAEVDEENPELITVKGVFEVQKLVAHVRRGVDKIVTVIKEENAAGGGSGGGEEGIE 74
          +GV SAE+D+E PELITVKGVFEV+KL+AH+RRGV+KI TVIKEE A+ GG     E  +
Sbjct: 2  KGVISAEIDKEVPELITVKGVFEVKKLLAHIRRGVEKIATVIKEEPASAGG-----EDQQ 61

Query: 75 AAAAGGGSEQ 85
            AAG G+ +
Sbjct: 62 REAAGEGTSR 66

The following BLAST results are available for this feature:
BLAST of CmoCh04G011800 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh04G011800 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KDJ7_CUCSA3.9e-1061.43Uncharacterized protein OS=Cucumis sativus GN=Csa_6G094160 PE=4 SV=1[more]
BLAST of CmoCh04G011800 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh04G011800 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778722058|ref|XP_011658396.1|3.8e-1156.32PREDICTED: uncharacterized protein LOC105435985 [Cucumis sativus][more]
gi|700191243|gb|KGN46447.1|5.6e-1061.43hypothetical protein Csa_6G094160 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G011800.1CmoCh04G011800.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh04G011800Cp4.1LG01g11310Cucurbita pepo (Zucchini)cmocpeB673
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh04G011800Cucurbita pepo (Zucchini)cmocpeB675
CmoCh04G011800Cucurbita pepo (Zucchini)cmocpeB694
CmoCh04G011800Cucurbita pepo (Zucchini)cmocpeB699
CmoCh04G011800Cucurbita pepo (Zucchini)cmocpeB711
CmoCh04G011800Bottle gourd (USVL1VR-Ls)cmolsiB638
CmoCh04G011800Bottle gourd (USVL1VR-Ls)cmolsiB648
CmoCh04G011800Bottle gourd (USVL1VR-Ls)cmolsiB656
CmoCh04G011800Bottle gourd (USVL1VR-Ls)cmolsiB669
CmoCh04G011800Cucumber (Gy14) v2cgybcmoB124
CmoCh04G011800Cucumber (Gy14) v2cgybcmoB390
CmoCh04G011800Cucumber (Gy14) v2cgybcmoB651
CmoCh04G011800Cucumber (Gy14) v2cgybcmoB820
CmoCh04G011800Melon (DHL92) v3.6.1cmomedB736
CmoCh04G011800Melon (DHL92) v3.6.1cmomedB748
CmoCh04G011800Melon (DHL92) v3.6.1cmomedB764
CmoCh04G011800Melon (DHL92) v3.6.1cmomedB769
CmoCh04G011800Silver-seed gourdcarcmoB0124
CmoCh04G011800Silver-seed gourdcarcmoB0224
CmoCh04G011800Silver-seed gourdcarcmoB0923
CmoCh04G011800Silver-seed gourdcarcmoB1341
CmoCh04G011800Cucumber (Chinese Long) v3cmocucB0804
CmoCh04G011800Cucumber (Chinese Long) v3cmocucB0818
CmoCh04G011800Cucumber (Chinese Long) v3cmocucB0872
CmoCh04G011800Cucumber (Chinese Long) v3cmocucB0903
CmoCh04G011800Watermelon (97103) v2cmowmbB691
CmoCh04G011800Watermelon (97103) v2cmowmbB700
CmoCh04G011800Watermelon (97103) v2cmowmbB720
CmoCh04G011800Watermelon (97103) v2cmowmbB754
CmoCh04G011800Wax gourdcmowgoB0860
CmoCh04G011800Wax gourdcmowgoB0882
CmoCh04G011800Wax gourdcmowgoB0888
CmoCh04G011800Cucurbita moschata (Rifu)cmocmoB186
CmoCh04G011800Cucurbita moschata (Rifu)cmocmoB219
CmoCh04G011800Cucurbita moschata (Rifu)cmocmoB464
CmoCh04G011800Cucurbita moschata (Rifu)cmocmoB466
CmoCh04G011800Cucurbita moschata (Rifu)cmocmoB473
CmoCh04G011800Cucumber (Gy14) v1cgycmoB0372
CmoCh04G011800Cucumber (Gy14) v1cgycmoB0505
CmoCh04G011800Cucumber (Gy14) v1cgycmoB1023
CmoCh04G011800Cucurbita maxima (Rimu)cmacmoB238
CmoCh04G011800Cucurbita maxima (Rimu)cmacmoB264
CmoCh04G011800Cucurbita maxima (Rimu)cmacmoB728
CmoCh04G011800Cucurbita maxima (Rimu)cmacmoB730
CmoCh04G011800Cucurbita maxima (Rimu)cmacmoB735
CmoCh04G011800Cucurbita maxima (Rimu)cmacmoB828
CmoCh04G011800Wild cucumber (PI 183967)cmocpiB746
CmoCh04G011800Wild cucumber (PI 183967)cmocpiB691
CmoCh04G011800Wild cucumber (PI 183967)cmocpiB699
CmoCh04G011800Wild cucumber (PI 183967)cmocpiB773
CmoCh04G011800Cucumber (Chinese Long) v2cmocuB677
CmoCh04G011800Cucumber (Chinese Long) v2cmocuB688
CmoCh04G011800Cucumber (Chinese Long) v2cmocuB736
CmoCh04G011800Cucumber (Chinese Long) v2cmocuB764
CmoCh04G011800Melon (DHL92) v3.5.1cmomeB648
CmoCh04G011800Melon (DHL92) v3.5.1cmomeB658
CmoCh04G011800Melon (DHL92) v3.5.1cmomeB675
CmoCh04G011800Melon (DHL92) v3.5.1cmomeB678
CmoCh04G011800Watermelon (Charleston Gray)cmowcgB617
CmoCh04G011800Watermelon (Charleston Gray)cmowcgB625
CmoCh04G011800Watermelon (Charleston Gray)cmowcgB648
CmoCh04G011800Watermelon (Charleston Gray)cmowcgB675
CmoCh04G011800Watermelon (97103) v1cmowmB656
CmoCh04G011800Watermelon (97103) v1cmowmB668
CmoCh04G011800Watermelon (97103) v1cmowmB684
CmoCh04G011800Watermelon (97103) v1cmowmB734