CmoCh04G009270.1 (mRNA) Cucurbita moschata (Rifu)

Overview
NameCmoCh04G009270.1
TypemRNA
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionCystatin/monellin superfamily protein
LocationCmo_Chr04 : 4661174 .. 4663409 (+)
Sequence length728
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCTGCGTTTGCTCTCTCCGACCATTTGTAACTTCTCATTCTCTATTTATAGGGCTTCAAAACTCACCATCTTCCTTCTCCATTATCTTCCCCTCCTCTCTGCGTTTGCTCTCCGTCAATTTCGTAAGTCTCTTACTCTATTTTTTTTCTTTATTTTTATTTTTATCATGTTTGCTGTGCGAGTTGGATCGAGTTGGATCATCTCTTGCCCCTCTCCTGTTTCTGCTAATTTTTGTAATTGTTGTGTTATTTTATCTCAGGCCATTTCTGGTAATTTTTGTTATTGCTGTATTTTTCTCTTGGATGTGTGATGATTCTCCCCCTTGTATATATATTTTTAACCCTATAAACTTGTCCAATCTCTATATCTTTTGTTGTTACTCATGGGTTTTGGATCCATTCAAATTTTATTAACAAACTAAATTAAAAAAATTGATTTGGATATATTAGATGAAGGTACTTCGAGCACTGGATCTGATGCCTTCTTCAAACCACCTCTCGGAGGAAGAGGAGGAAGAGATAGATTCGGACGATGAATTTTATCAAGACGGTTACCATACTATCACTAAGAAAGAAGAGAGGGAGTATTTTCGTGCAGTTGAAGAATCAGAGGTTTATTTTCTTTTAATTTTTCAATGGTCAAACGATATTTTTTTCTTTTTTTAATTGATGGATGTATGCAGGGTTTTGATGTACCGGATTTTGACAAAGTCTTTTCATATAGTCTCATCGCTCCAATAGATATGCATGAGGACTCATGGATGCTTAAAGAGGTTCGAATCTCAGCAAATAAAGCTATCAAATATTACAACAAGGAAAATGTAATGTGCTAACTTGCTAGCTATGCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGGGAACTAATTTTGAAGTCGTAGAGATTGTGAAATGTTTCTTTTATCTTCCTATAGACAGGGAACTAATTTTGAAGTCGTAGAGATTGTGAAATGTTTCTTTTATCTATAGGGAACTAATTTTGAAGTCGTAGAGATTGTGAAATGTTTCTTTTATCTATAGGGAACTAATTTTGAAGTCGTAGAGATTGTGAAATGTTTCTTTTATCTATAGGGAACTAATTTTGAAGTCGTAGAGATTGTGAAATGTTTCTTTTATCTATAGGGAACTAATTTTGAAGTCGTAGAGATTGTGAAATGTTTCTTTTATCTATAGGGAACTAATTTTGAAGTCGTAGAGATTGTGAAATGTTTCTTTTATCTTCCTATAGACAGGGAACTAATTTTGAAGTCGTAGAGATTGTGAAATGTTTCTTTTATCTATAGGGAACTAATTTTGAAGTCGTAGAGATTGTGAAATGTTTCTTTTATCTATAGGGAACTAATTTTGAAGTCGTAGAGATTGTGAAATGTTTCTTTTATCTATAGGGAACTAATTTTGAAGTCGTAGAGATTGTGAAATGTTTCTTTTATCTATAGGGAACTAATTTTGAAGTCGTAGAGATTGTGAAATGTTTCTTTTATCTTCCTATAGGGAACTAATTTTGAAGTCGTAGAGATTGTGAAATGTTTCTTTTATCTATAGGGAACTAATTTTGAAGTCGTAGAGATTGTGAAATGTTTCTTTTATCTATAGGGAACTAATTTTGAAGTCGTAGAGATTGTGAAATGTTTCTTTTATCTATAGGGAACTAATTTTGAAGTCGTAGAGATTGTGAAATGTTTCTTTTATCTATAGGGAACTAATTTTGAAGTCGTAGAGATTGTGAAATGTTTCTTTTATCTATAGGGAACTAATTTTGAAGTCGTAGAGATTGTGAAGGCGAATCATTCTGGATGCTGTGGCTCGATGTATTACATCACATTTAATGTGAAGCCGATTGGAACCTCGGCAGAATTTTCCCCAATAACCTTCCAAGCTAAAGTTTATTACGCTATTCCTATAAAAGATATTATAGACGTCGAACTTTGCAGGCCAAAGTTCTTTAATTAGCGACGGATAAACTACTTATTACTTTTTATCATATCATTCTGGTTGGCTATTTGTTACTTTTTATTACTTTTTATCATATCATTTTGTTTGGTGATTAAATATAGACAATATTATATAATTAAATATAGACAATATTATATAATTAAATAT

mRNA sequence

TCTGCGTTTGCTCTCTCCGACCATTTGTAACTTCTCATTCTCTATTTATAGGGCTTCAAAACTCACCATCTTCCTTCTCCATTATCTTCCCCTCCTCTCTGCGTTTGCTCTCCGTCAATTTCATGAAGGTACTTCGAGCACTGGATCTGATGCCTTCTTCAAACCACCTCTCGGAGGAAGAGGAGGAAGAGATAGATTCGGACGATGAATTTTATCAAGACGGTTACCATACTATCACTAAGAAAGAAGAGAGGGAGTATTTTCGTGCAGTTGAAGAATCAGAGGGTTTTGATGTACCGGATTTTGACAAAGTCTTTTCATATAGTCTCATCGCTCCAATAGATATGCATGAGGACTCATGGATGCTTAAAGAGGGAACTAATTTTGAAGTCGTAGAGATTGTGAAGGCGAATCATTCTGGATGCTGTGGCTCGATGTATTACATCACATTTAATGTGAAGCCGATTGGAACCTCGGCAGAATTTTCCCCAATAACCTTCCAAGCTAAAGTTTATTACGCTATTCCTATAAAAGATATTATAGACGTCGAACTTTGCAGGCCAAAGTTCTTTAATTAGCGACGGATAAACTACTTATTACTTTTTATCATATCATTCTGGTTGGCTATTTGTTACTTTTTATTACTTTTTATCATATCATTTTGTTTGGTGATTAAATATAGACAATATTATATAATTAAATATAGACAATATTATATAATTAAATAT

Coding sequence (CDS)

ATGAAGGTACTTCGAGCACTGGATCTGATGCCTTCTTCAAACCACCTCTCGGAGGAAGAGGAGGAAGAGATAGATTCGGACGATGAATTTTATCAAGACGGTTACCATACTATCACTAAGAAAGAAGAGAGGGAGTATTTTCGTGCAGTTGAAGAATCAGAGGGTTTTGATGTACCGGATTTTGACAAAGTCTTTTCATATAGTCTCATCGCTCCAATAGATATGCATGAGGACTCATGGATGCTTAAAGAGGGAACTAATTTTGAAGTCGTAGAGATTGTGAAGGCGAATCATTCTGGATGCTGTGGCTCGATGTATTACATCACATTTAATGTGAAGCCGATTGGAACCTCGGCAGAATTTTCCCCAATAACCTTCCAAGCTAAAGTTTATTACGCTATTCCTATAAAAGATATTATAGACGTCGAACTTTGCAGGCCAAAGTTCTTTAATTAG
Homology
[Close]
BLAST of CmoCh04G009270.1 vs. NCBI nr
Match: gi|970014054|ref|XP_015068007.1| (PREDICTED: UPF0725 protein At4g29550-like [Solanum pennellii])

HSP 1 Score: 59.3 bits (142), Expect = 6.7e-06
Identity = 45/146 (30.82%), Postives = 72/146 (49.32%), Query Frame = 1 

Query: 23  EIDSDDEFYQDGYHTITKKEEREYFRAVEESEGFDVPDFDKVFSYSLIAP---------- 82
           + DSD++F       + K    +Y++ V+ESEGFD+ D+    + + + P          
Sbjct: 91  QYDSDEDFCPYYPQKMDKAVWEKYYQQVKESEGFDITDYPGQCAMTTVYPMPFYLNDPKN 150

Query: 83  IDMHED-------SWMLKEGTNFEVVEIVKANHSGCCGSMYYITFNVKPIGTSAEFSPIT 142
           +DM  D        +  ++GTN+EV +I+K N  GC   ++YITF+VK      +     
Sbjct: 151 VDMMTDYAGKALRQYNDEKGTNYEVDDILKVNGGGCRDFIFYITFSVKAHDDKDDI---- 210

Query: 143 FQAKVYYAIPIKDI---IDVELCRPK 149
           FQAKV     +KD+   +   L RPK
Sbjct: 211 FQAKV-----VKDLRYRLQFPLVRPK 227

The following BLAST results are available for this feature:
BLAST of CmoCh04G009270.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh04G009270.1 vs. TrEMBL
Match NameE-valueIdentityDescription
BLAST of CmoCh04G009270.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh04G009270.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|970014054|ref|XP_015068007.1|6.7e-0630.82PREDICTED: UPF0725 protein At4g29550-like [Solanum pennellii][more]
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmoCh04G009270CmoCh04G009270gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmoCh04G009270.1CmoCh04G009270.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh04G009270.1.exon.1CmoCh04G009270.1.exon.1exon
CmoCh04G009270.1.exon.2CmoCh04G009270.1.exon.2exon
CmoCh04G009270.1.exon.3CmoCh04G009270.1.exon.3exon
CmoCh04G009270.1.exon.4CmoCh04G009270.1.exon.4exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh04G009270.1.five_prime_UTR.1CmoCh04G009270.1.five_prime_UTR.1five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh04G009270.1.CDS.1CmoCh04G009270.1.CDS.1CDS
CmoCh04G009270.1.CDS.2CmoCh04G009270.1.CDS.2CDS
CmoCh04G009270.1.CDS.3CmoCh04G009270.1.CDS.3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh04G009270.1.three_prime_UTR.1CmoCh04G009270.1.three_prime_UTR.1three_prime_UTR


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3DG3DSA:3.10.450.10coord: 83..132
score: 3.
NoneNo IPR availablePANTHERPTHR31260FAMILY NOT NAMEDcoord: 7..148
score: 1.5