CmoCh04G009270 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh04G009270
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionCystatin/monellin superfamily protein
LocationCmo_Chr04 : 4661174 .. 4663409 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCTGCGTTTGCTCTCTCCGACCATTTGTAACTTCTCATTCTCTATTTATAGGGCTTCAAAACTCACCATCTTCCTTCTCCATTATCTTCCCCTCCTCTCTGCGTTTGCTCTCCGTCAATTTCGTAAGTCTCTTACTCTATTTTTTTTCTTTATTTTTATTTTTATCATGTTTGCTGTGCGAGTTGGATCGAGTTGGATCATCTCTTGCCCCTCTCCTGTTTCTGCTAATTTTTGTAATTGTTGTGTTATTTTATCTCAGGCCATTTCTGGTAATTTTTGTTATTGCTGTATTTTTCTCTTGGATGTGTGATGATTCTCCCCCTTGTATATATATTTTTAACCCTATAAACTTGTCCAATCTCTATATCTTTTGTTGTTACTCATGGGTTTTGGATCCATTCAAATTTTATTAACAAACTAAATTAAAAAAATTGATTTGGATATATTAGATGAAGGTACTTCGAGCACTGGATCTGATGCCTTCTTCAAACCACCTCTCGGAGGAAGAGGAGGAAGAGATAGATTCGGACGATGAATTTTATCAAGACGGTTACCATACTATCACTAAGAAAGAAGAGAGGGAGTATTTTCGTGCAGTTGAAGAATCAGAGGTTTATTTTCTTTTAATTTTTCAATGGTCAAACGATATTTTTTTCTTTTTTTAATTGATGGATGTATGCAGGGTTTTGATGTACCGGATTTTGACAAAGTCTTTTCATATAGTCTCATCGCTCCAATAGATATGCATGAGGACTCATGGATGCTTAAAGAGGTTCGAATCTCAGCAAATAAAGCTATCAAATATTACAACAAGGAAAATGTAATGTGCTAACTTGCTAGCTATGCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGGGAACTAATTTTGAAGTCGTAGAGATTGTGAAATGTTTCTTTTATCTTCCTATAGACAGGGAACTAATTTTGAAGTCGTAGAGATTGTGAAATGTTTCTTTTATCTATAGGGAACTAATTTTGAAGTCGTAGAGATTGTGAAATGTTTCTTTTATCTATAGGGAACTAATTTTGAAGTCGTAGAGATTGTGAAATGTTTCTTTTATCTATAGGGAACTAATTTTGAAGTCGTAGAGATTGTGAAATGTTTCTTTTATCTATAGGGAACTAATTTTGAAGTCGTAGAGATTGTGAAATGTTTCTTTTATCTATAGGGAACTAATTTTGAAGTCGTAGAGATTGTGAAATGTTTCTTTTATCTTCCTATAGACAGGGAACTAATTTTGAAGTCGTAGAGATTGTGAAATGTTTCTTTTATCTATAGGGAACTAATTTTGAAGTCGTAGAGATTGTGAAATGTTTCTTTTATCTATAGGGAACTAATTTTGAAGTCGTAGAGATTGTGAAATGTTTCTTTTATCTATAGGGAACTAATTTTGAAGTCGTAGAGATTGTGAAATGTTTCTTTTATCTATAGGGAACTAATTTTGAAGTCGTAGAGATTGTGAAATGTTTCTTTTATCTTCCTATAGGGAACTAATTTTGAAGTCGTAGAGATTGTGAAATGTTTCTTTTATCTATAGGGAACTAATTTTGAAGTCGTAGAGATTGTGAAATGTTTCTTTTATCTATAGGGAACTAATTTTGAAGTCGTAGAGATTGTGAAATGTTTCTTTTATCTATAGGGAACTAATTTTGAAGTCGTAGAGATTGTGAAATGTTTCTTTTATCTATAGGGAACTAATTTTGAAGTCGTAGAGATTGTGAAATGTTTCTTTTATCTATAGGGAACTAATTTTGAAGTCGTAGAGATTGTGAAGGCGAATCATTCTGGATGCTGTGGCTCGATGTATTACATCACATTTAATGTGAAGCCGATTGGAACCTCGGCAGAATTTTCCCCAATAACCTTCCAAGCTAAAGTTTATTACGCTATTCCTATAAAAGATATTATAGACGTCGAACTTTGCAGGCCAAAGTTCTTTAATTAGCGACGGATAAACTACTTATTACTTTTTATCATATCATTCTGGTTGGCTATTTGTTACTTTTTATTACTTTTTATCATATCATTTTGTTTGGTGATTAAATATAGACAATATTATATAATTAAATATAGACAATATTATATAATTAAATAT

mRNA sequence

TCTGCGTTTGCTCTCTCCGACCATTTGTAACTTCTCATTCTCTATTTATAGGGCTTCAAAACTCACCATCTTCCTTCTCCATTATCTTCCCCTCCTCTCTGCGTTTGCTCTCCGTCAATTTCATGAAGGTACTTCGAGCACTGGATCTGATGCCTTCTTCAAACCACCTCTCGGAGGAAGAGGAGGAAGAGATAGATTCGGACGATGAATTTTATCAAGACGGTTACCATACTATCACTAAGAAAGAAGAGAGGGAGTATTTTCGTGCAGTTGAAGAATCAGAGGGTTTTGATGTACCGGATTTTGACAAAGTCTTTTCATATAGTCTCATCGCTCCAATAGATATGCATGAGGACTCATGGATGCTTAAAGAGGGAACTAATTTTGAAGTCGTAGAGATTGTGAAGGCGAATCATTCTGGATGCTGTGGCTCGATGTATTACATCACATTTAATGTGAAGCCGATTGGAACCTCGGCAGAATTTTCCCCAATAACCTTCCAAGCTAAAGTTTATTACGCTATTCCTATAAAAGATATTATAGACGTCGAACTTTGCAGGCCAAAGTTCTTTAATTAGCGACGGATAAACTACTTATTACTTTTTATCATATCATTCTGGTTGGCTATTTGTTACTTTTTATTACTTTTTATCATATCATTTTGTTTGGTGATTAAATATAGACAATATTATATAATTAAATATAGACAATATTATATAATTAAATAT

Coding sequence (CDS)

ATGAAGGTACTTCGAGCACTGGATCTGATGCCTTCTTCAAACCACCTCTCGGAGGAAGAGGAGGAAGAGATAGATTCGGACGATGAATTTTATCAAGACGGTTACCATACTATCACTAAGAAAGAAGAGAGGGAGTATTTTCGTGCAGTTGAAGAATCAGAGGGTTTTGATGTACCGGATTTTGACAAAGTCTTTTCATATAGTCTCATCGCTCCAATAGATATGCATGAGGACTCATGGATGCTTAAAGAGGGAACTAATTTTGAAGTCGTAGAGATTGTGAAGGCGAATCATTCTGGATGCTGTGGCTCGATGTATTACATCACATTTAATGTGAAGCCGATTGGAACCTCGGCAGAATTTTCCCCAATAACCTTCCAAGCTAAAGTTTATTACGCTATTCCTATAAAAGATATTATAGACGTCGAACTTTGCAGGCCAAAGTTCTTTAATTAG
Homology
[Close]
BLAST of CmoCh04G009270 vs. NCBI nr
Match: gi|970014054|ref|XP_015068007.1| (PREDICTED: UPF0725 protein At4g29550-like [Solanum pennellii])

HSP 1 Score: 59.3 bits (142), Expect = 6.7e-06
Identity = 45/146 (30.82%), Postives = 72/146 (49.32%), Query Frame = 1 

Query: 23  EIDSDDEFYQDGYHTITKKEEREYFRAVEESEGFDVPDFDKVFSYSLIAP---------- 82
           + DSD++F       + K    +Y++ V+ESEGFD+ D+    + + + P          
Sbjct: 91  QYDSDEDFCPYYPQKMDKAVWEKYYQQVKESEGFDITDYPGQCAMTTVYPMPFYLNDPKN 150

Query: 83  IDMHED-------SWMLKEGTNFEVVEIVKANHSGCCGSMYYITFNVKPIGTSAEFSPIT 142
           +DM  D        +  ++GTN+EV +I+K N  GC   ++YITF+VK      +     
Sbjct: 151 VDMMTDYAGKALRQYNDEKGTNYEVDDILKVNGGGCRDFIFYITFSVKAHDDKDDI---- 210

Query: 143 FQAKVYYAIPIKDI---IDVELCRPK 149
           FQAKV     +KD+   +   L RPK
Sbjct: 211 FQAKV-----VKDLRYRLQFPLVRPK 227

The following BLAST results are available for this feature:
BLAST of CmoCh04G009270 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh04G009270 vs. TrEMBL
Match NameE-valueIdentityDescription
BLAST of CmoCh04G009270 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh04G009270 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|970014054|ref|XP_015068007.1|6.7e-0630.82PREDICTED: UPF0725 protein At4g29550-like [Solanum pennellii][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G009270.1CmoCh04G009270.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3DG3DSA:3.10.450.10coord: 83..132
score: 3.
NoneNo IPR availablePANTHERPTHR31260FAMILY NOT NAMEDcoord: 7..148
score: 1.5

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh04G009270CmaCh04G008650Cucurbita maxima (Rimu)cmacmoB728
CmoCh04G009270Carg25855Silver-seed gourdcarcmoB0015
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh04G009270Wild cucumber (PI 183967)cmocpiB703
CmoCh04G009270Cucumber (Chinese Long) v2cmocuB693
CmoCh04G009270Melon (DHL92) v3.5.1cmomeB680
CmoCh04G009270Watermelon (Charleston Gray)cmowcgB615
CmoCh04G009270Watermelon (97103) v1cmowmB655
CmoCh04G009270Cucurbita pepo (Zucchini)cmocpeB667
CmoCh04G009270Cucurbita pepo (Zucchini)cmocpeB673
CmoCh04G009270Bottle gourd (USVL1VR-Ls)cmolsiB685
CmoCh04G009270Cucumber (Gy14) v2cgybcmoB393
CmoCh04G009270Melon (DHL92) v3.6.1cmomedB775
CmoCh04G009270Silver-seed gourdcarcmoB1259
CmoCh04G009270Silver-seed gourdcarcmoB1371
CmoCh04G009270Cucumber (Chinese Long) v3cmocucB0822
CmoCh04G009270Watermelon (97103) v2cmowmbB689
CmoCh04G009270Wax gourdcmowgoB0811
CmoCh04G009270Cucurbita moschata (Rifu)cmocmoB285
CmoCh04G009270Cucumber (Gy14) v1cgycmoB0715
CmoCh04G009270Cucurbita maxima (Rimu)cmacmoB337