CmoCh04G006860.1 (mRNA) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G006860.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Unknown protein
Location	Cmo_Chr04 : 3406598 .. 3407021 (-)
Sequence length	402

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTGGTATTGGTATGAGATTTACTGGAATTTCCGTTTTTAATTAAATAGTTACAGAGCTTTCTCCAGTTCCACCAGCTCCGACGCCGCATGCGGTGGTTGACGTCACGCACGTGGCTCACGTGTGATCTGGCTTTTCTCATCAATCCGTACACCTCCGGCGGTCGGTACATCCGGATTAACGCCCATTTTATGCCGTTGAAGAATGGATGCCGTTTGATCTCCGTCGCCCCTTTCCCGGATCCCAACCGTCTCGCCGGATCTTTCACCAGTAGTCTCTCTATCAGATCCCTCGCCTCTGCTATACCTTCCTCTTCCTCCATGGCCGCCCTGAACTTCACCCCTTCTGTAGACGCTATGTTTCTAAGCGTACCCTCCTTGTTCACTCCCCTAAACGGCGTCGTTCCGTGTAGCAGCTCGTAA

mRNA sequence

ATGATTGGTATTGGTATGAGATTTACTGGAATTTCCAGCTTTCTCCAGTTCCACCAGCTCCGACGCCGCATGCGGTGGTTGACGTCACGCACGTGGCTCACGTGTGATCTGGCTTTTCTCATCAATCCGTACACCTCCGGCGGTCGGTACATCCGGATTAACGCCCATTTTATGCCGTTGAAGAATGGATGCCGTTTGATCTCCGTCGCCCCTTTCCCGGATCCCAACCGTCTCGCCGGATCTTTCACCAGTAGTCTCTCTATCAGATCCCTCGCCTCTGCTATACCTTCCTCTTCCTCCATGGCCGCCCTGAACTTCACCCCTTCTGTAGACGCTATGTTTCTAAGCGTACCCTCCTTGTTCACTCCCCTAAACGGCGTCGTTCCGTGTAGCAGCTCGTAA

Coding sequence (CDS)

ATGATTGGTATTGGTATGAGATTTACTGGAATTTCCAGCTTTCTCCAGTTCCACCAGCTCCGACGCCGCATGCGGTGGTTGACGTCACGCACGTGGCTCACGTGTGATCTGGCTTTTCTCATCAATCCGTACACCTCCGGCGGTCGGTACATCCGGATTAACGCCCATTTTATGCCGTTGAAGAATGGATGCCGTTTGATCTCCGTCGCCCCTTTCCCGGATCCCAACCGTCTCGCCGGATCTTTCACCAGTAGTCTCTCTATCAGATCCCTCGCCTCTGCTATACCTTCCTCTTCCTCCATGGCCGCCCTGAACTTCACCCCTTCTGTAGACGCTATGTTTCTAAGCGTACCCTCCTTGTTCACTCCCCTAAACGGCGTCGTTCCGTGTAGCAGCTCGTAA

Homology

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BLAST of CmoCh04G006860.1 vs. TrEMBL
Match: A0A0P0YA51_ORYSJ (Os12g0480250 protein (Fragment) OS=Oryza sativa subsp. japonica GN=Os12g0480250 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 7.0e-06
Identity = 41/88 (46.59%), Postives = 48/88 (54.55%), Query Frame = 1


Query: 46  SGGRYIRINAHFMPLKNGCRLISVAPFPDPNRLAGSFTSSLSIRSLASAIPSSSSMAALN 105
           SGG   RI A F P K GC LIS AP  DP+  +GSFTS   IRSLA  +    S   L 
Sbjct: 11  SGGAADRIKAQFKPSKKGCCLISAAPLNDPSLFSGSFTSKPLIRSLALLLTDGFS-GNLR 70

Query: 106 FTPSVDAMFLSVPSLFTPLNGVVPCSSS 134
           F    +  F +V S   PL GV+P +SS
Sbjct: 71  F---CETTFANVSSFPGPLKGVLPYNSS 94

The following BLAST results are available for this feature:

BLAST of CmoCh04G006860.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh04G006860.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0P0YA51_ORYSJ	7.0e-06	46.59	Os12g0480250 protein (Fragment) OS=Oryza sativa subsp. japonica GN=Os12g0480250 ...	[more]

BLAST of CmoCh04G006860.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh04G006860.1 vs. NCBI nr


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh04G006860	CmoCh04G006860	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh04G006860.1	CmoCh04G006860.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh04G006860.1.CDS.2	CmoCh04G006860.1.CDS.2	CDS
CmoCh04G006860.1.CDS.1	CmoCh04G006860.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh04G006860.1.exon.2	CmoCh04G006860.1.exon.2	exon
CmoCh04G006860.1.exon.1	CmoCh04G006860.1.exon.1	exon