CmoCh04G006860 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh04G006860
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr04 : 3406598 .. 3407021 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTGGTATTGGTATGAGATTTACTGGAATTTCCGTTTTTAATTAAATAGTTACAGAGCTTTCTCCAGTTCCACCAGCTCCGACGCCGCATGCGGTGGTTGACGTCACGCACGTGGCTCACGTGTGATCTGGCTTTTCTCATCAATCCGTACACCTCCGGCGGTCGGTACATCCGGATTAACGCCCATTTTATGCCGTTGAAGAATGGATGCCGTTTGATCTCCGTCGCCCCTTTCCCGGATCCCAACCGTCTCGCCGGATCTTTCACCAGTAGTCTCTCTATCAGATCCCTCGCCTCTGCTATACCTTCCTCTTCCTCCATGGCCGCCCTGAACTTCACCCCTTCTGTAGACGCTATGTTTCTAAGCGTACCCTCCTTGTTCACTCCCCTAAACGGCGTCGTTCCGTGTAGCAGCTCGTAA

mRNA sequence

ATGATTGGTATTGGTATGAGATTTACTGGAATTTCCAGCTTTCTCCAGTTCCACCAGCTCCGACGCCGCATGCGGTGGTTGACGTCACGCACGTGGCTCACGTGTGATCTGGCTTTTCTCATCAATCCGTACACCTCCGGCGGTCGGTACATCCGGATTAACGCCCATTTTATGCCGTTGAAGAATGGATGCCGTTTGATCTCCGTCGCCCCTTTCCCGGATCCCAACCGTCTCGCCGGATCTTTCACCAGTAGTCTCTCTATCAGATCCCTCGCCTCTGCTATACCTTCCTCTTCCTCCATGGCCGCCCTGAACTTCACCCCTTCTGTAGACGCTATGTTTCTAAGCGTACCCTCCTTGTTCACTCCCCTAAACGGCGTCGTTCCGTGTAGCAGCTCGTAA

Coding sequence (CDS)

ATGATTGGTATTGGTATGAGATTTACTGGAATTTCCAGCTTTCTCCAGTTCCACCAGCTCCGACGCCGCATGCGGTGGTTGACGTCACGCACGTGGCTCACGTGTGATCTGGCTTTTCTCATCAATCCGTACACCTCCGGCGGTCGGTACATCCGGATTAACGCCCATTTTATGCCGTTGAAGAATGGATGCCGTTTGATCTCCGTCGCCCCTTTCCCGGATCCCAACCGTCTCGCCGGATCTTTCACCAGTAGTCTCTCTATCAGATCCCTCGCCTCTGCTATACCTTCCTCTTCCTCCATGGCCGCCCTGAACTTCACCCCTTCTGTAGACGCTATGTTTCTAAGCGTACCCTCCTTGTTCACTCCCCTAAACGGCGTCGTTCCGTGTAGCAGCTCGTAA
Homology
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BLAST of CmoCh04G006860 vs. TrEMBL
Match: A0A0P0YA51_ORYSJ (Os12g0480250 protein (Fragment) OS=Oryza sativa subsp. japonica GN=Os12g0480250 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 7.0e-06
Identity = 41/88 (46.59%), Postives = 48/88 (54.55%), Query Frame = 1 

Query: 46  SGGRYIRINAHFMPLKNGCRLISVAPFPDPNRLAGSFTSSLSIRSLASAIPSSSSMAALN 105
           SGG   RI A F P K GC LIS AP  DP+  +GSFTS   IRSLA  +    S   L 
Sbjct: 11  SGGAADRIKAQFKPSKKGCCLISAAPLNDPSLFSGSFTSKPLIRSLALLLTDGFS-GNLR 70

Query: 106 FTPSVDAMFLSVPSLFTPLNGVVPCSSS 134
           F    +  F +V S   PL GV+P +SS
Sbjct: 71  F---CETTFANVSSFPGPLKGVLPYNSS 94

The following BLAST results are available for this feature:
BLAST of CmoCh04G006860 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh04G006860 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0P0YA51_ORYSJ7.0e-0646.59Os12g0480250 protein (Fragment) OS=Oryza sativa subsp. japonica GN=Os12g0480250 ... [more]
BLAST of CmoCh04G006860 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh04G006860 vs. NCBI nr
Match NameE-valueIdentityDescription
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G006860.1CmoCh04G006860.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh04G006860Cucumber (Chinese Long) v3cmocucB0827
CmoCh04G006860Watermelon (97103) v2cmowmbB756
CmoCh04G006860Wax gourdcmowgoB0844
CmoCh04G006860Cucurbita moschata (Rifu)cmocmoB288
CmoCh04G006860Cucumber (Gy14) v1cgycmoB0512
CmoCh04G006860Cucurbita maxima (Rimu)cmacmoB340
CmoCh04G006860Cucurbita maxima (Rimu)cmacmoB728
CmoCh04G006860Wild cucumber (PI 183967)cmocpiB707
CmoCh04G006860Cucumber (Chinese Long) v2cmocuB699
CmoCh04G006860Melon (DHL92) v3.5.1cmomeB693
CmoCh04G006860Watermelon (Charleston Gray)cmowcgB677
CmoCh04G006860Watermelon (97103) v1cmowmB686
CmoCh04G006860Cucurbita pepo (Zucchini)cmocpeB670
CmoCh04G006860Cucurbita pepo (Zucchini)cmocpeB673
CmoCh04G006860Bottle gourd (USVL1VR-Ls)cmolsiB689
CmoCh04G006860Bottle gourd (USVL1VR-Ls)cmolsiB696
CmoCh04G006860Cucumber (Gy14) v2cgybcmoB515
CmoCh04G006860Melon (DHL92) v3.6.1cmomedB787
CmoCh04G006860Silver-seed gourdcarcmoB0058
CmoCh04G006860Silver-seed gourdcarcmoB0902