CmoCh04G005060.1 (mRNA) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G005060.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	PRKR-interacting 1
Location	Cmo_Chr04 : 2514622 .. 2517114 (+)
Sequence length	927

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAACCGGCAAGCTGAAGGATGGAGACCGTCGGCTGGTGATTCCGATGCCCCCCAAACCGAAATCTGATACCCAGTTGGCGACAACCGAGTCGAACGCGCTTGTAGCGTATACGCCGCCGGTGAAGGAGGAGGATGAGGATTTGGAGGTCAAGCTCCGAAGAATCATCGATAATGTTCCTGTTCGTGTCAGCAACACGTCTGGAAGCTCTGCTGGTTCTGGTTCCGGTGATTTTCACCAGGTATTGAGTGATTTATGTTGTTTTATATTGCGTAAATTTTATTAGTGACTTCTGTCTGCGGTTTATTCTCTCGTGGGCGTGTTTTCATGATGAATGGATGTAAAATTGTACCAATGCATTACTGGGATTGGTTAGCAACGAGTGTGATTCCTATCTTAGGTCTTATGATATGAAACAAACTGGTTTCCGTACATTACAGGTTCTTTAAATTCTTGCGACTGTTAGCTGGTAATGAGTGGAAGAACTGATTATTGGGGGAATTAGGCTGGGTGTGAACAACAATATTTCCCTTACCAAAGGTCTGAAAATCCAAACTATTATTGAATGAGGAAGATGCCCCTTTCTTTGATGGAAATTTGAGTAAACAAAATTCCTAGATTGGGTTTAGCTCGTGGATGGTTTTTTTTTTTAATATATGGACGAAGGGGAGACATAGGATTGGTGTGATGATTACAAAAATGTTCATAAGCGAGTTGGAAAAGGTAGAATCCAAACCTGGCTAAAAGAGATAATCTACCTTGTAGGAGTGCAACTTTTAGATTTATGAGATCGGATGTTTGTAGATAATCGTAAAATCAGAACACCTAACTGGCTCATTGGGGTGGATTTGGAATTGTGTATTTGGCTCAAGTCGGATACAGGATAGTTGGTGTTCTTTTTAACTGGATGAAGCGTTTTTCATTGACCATGTTAAAATGCTGTTATCATGCGAGTGAAATACATATATTTGATCAAAATTTTCTGGGAGCATAATGAATTAATTGTTTGCTCACGCGGGAGTAGCATAGCAACTTAGCATTAACTATATGCTAGTTGGTTAGTACTTTCTTTACAATCAGTTAATGTCTTTGCTGAAGCTAGGACTTACTGGCTTCACCTTTTAGATTTTCACAGTGAAGAAAGTTTAAAATTATGGTGCTAGTCTGGTATTCAAAGCTGACTGCTGCCAAGCAGAATTTGATTTATTGGAGAGTTTGAAATTATACTAATTCTGACTGAGAGGAAGAAATGGATTGGAGCGATGATTGTTCCACGCACTCGAATTTACGTATGACCTATCAAAATCAGGTTGTTGTGGATATCATTAGGAAATAATGATCGTGGAGTAGCAGTAGTAGGTTGACAAGTACTCTGTTTGCAAGCAATGCTCTGAAATCTTAGCTCGTGAAAATGCATCGCTTGCTTTTGTTGGTTTTTGGTGTCATCTAAGAAGGGTTAATGTCATTTAATATAAGTCAAAGGACGAGGTTTATAAAAATACTGTTCGACGTGAAAGAAATTCTTTAGTCTGGTGTTAAATGGGTCTTTCATATTTCGAATCTTGATGTAGTTAAGAAAGGTAATGTATTACAATGGGGAATTGAAAGTTTTTACCTACTCAAACATCATCTGATGATTCTGATATGTGTTTAGGAAAGAAAGTCTCCACTTGTGTTGTTAAGCCTACAATTTTCACTTCAGATTGTAAATGCATAGGACCTTTTTGTTCGTGATTTTGTGGAGTCTGTCTCGATCGTTGAATATATATACTAATACGGGCCTGCCCATAAAATTTTCGAATGACAGTATAGGCAAATGAGGCGAAAAGAACAAGACAGACTTGCTAGAATGGACGTTGATTATCAGAAAAAGAAAGAAATAGCCGAATTCAATATGCGAAGGGAAGAACGGTTGAAAGCTGCCGAGGAACGCACTTCAAAGAAGCGACTAAAGCGTCAAAAGAAAAAGCAAAGAAGAAAAGAAAAGAAGAGCAAGTTGAATTCAAGCGGAGGAGATGAGAATCAGAAAGATGCATCCTCTGGTGATGAAGGGGATACCGATAATGGCGAGGATGAAGCAACATGACTCGTTATTCTCCACCCGGAATCGAAGTTTGAACTCTTAGCCTCGAGCTTTCAGACAAGCCATCTAACCGGAGACAGCTACCAGTACCTGGAATCTGGCTTTTGTGTTTTTATTGCAGGTGGGATTGGAAGAATGTTGGATTTGAATACACAATTCTCCCATCTTCCCACAGGACCTCTATCTTTCTCTCAATTGCATGGCGCTGAAATGTGTTAGCAGAATATCTATAACATTATTACATGTAGAACAGATGGACATAATATTAGTTGAGTCCAAGGGATACTCATGATTGTGTTATAACGATTCGTTGCTTATGATATATGAACAGAGGGGACGTTGATCTACGATCAGACCCTAACATGCTCGTAGAAACACCGACTATATCATTCATATTGAATGCTCATT

mRNA sequence

ATGTCAACCGGCAAGCTGAAGGATGGAGACCGTCGGCTGGTGATTCCGATGCCCCCCAAACCGAAATCTGATACCCAGTTGGCGACAACCGAGTCGAACGCGCTTGTAGCGTATACGCCGCCGGTGAAGGAGGAGGATGAGGATTTGGAGGTCAAGCTCCGAAGAATCATCGATAATGTTCCTGTTCGTGTCAGCAACACGTCTGGAAGCTCTGCTGGTTCTGGTTCCGGTGATTTTCACCAGTATAGGCAAATGAGGCGAAAAGAACAAGACAGACTTGCTAGAATGGACGTTGATTATCAGAAAAAGAAAGAAATAGCCGAATTCAATATGCGAAGGGAAGAACGGTTGAAAGCTGCCGAGGAACGCACTTCAAAGAAGCGACTAAAGCGTCAAAAGAAAAAGCAAAGAAGAAAAGAAAAGAAGAGCAAGTTGAATTCAAGCGGAGGAGATGAGAATCAGAAAGATGCATCCTCTGGTGATGAAGGGGATACCGATAATGGCGAGGATGAAGCAACATGACTCGTTATTCTCCACCCGGAATCGAAGTTTGAACTCTTAGCCTCGAGCTTTCAGACAAGCCATCTAACCGGAGACAGCTACCAGTACCTGGAATCTGGCTTTTGTGTTTTTATTGCAGGTGGGATTGGAAGAATGTTGGATTTGAATACACAATTCTCCCATCTTCCCACAGGACCTCTATCTTTCTCTCAATTGCATGGCGCTGAAATGTGTTAGCAGAATATCTATAACATTATTACATGTAGAACAGATGGACATAATATTAGTTGAGTCCAAGGGATACTCATGATTGTGTTATAACGATTCGTTGCTTATGATATATGAACAGAGGGGACGTTGATCTACGATCAGACCCTAACATGCTCGTAGAAACACCGACTATATCATTCATATTGAATGCTCATT

Coding sequence (CDS)

ATGTCAACCGGCAAGCTGAAGGATGGAGACCGTCGGCTGGTGATTCCGATGCCCCCCAAACCGAAATCTGATACCCAGTTGGCGACAACCGAGTCGAACGCGCTTGTAGCGTATACGCCGCCGGTGAAGGAGGAGGATGAGGATTTGGAGGTCAAGCTCCGAAGAATCATCGATAATGTTCCTGTTCGTGTCAGCAACACGTCTGGAAGCTCTGCTGGTTCTGGTTCCGGTGATTTTCACCAGTATAGGCAAATGAGGCGAAAAGAACAAGACAGACTTGCTAGAATGGACGTTGATTATCAGAAAAAGAAAGAAATAGCCGAATTCAATATGCGAAGGGAAGAACGGTTGAAAGCTGCCGAGGAACGCACTTCAAAGAAGCGACTAAAGCGTCAAAAGAAAAAGCAAAGAAGAAAAGAAAAGAAGAGCAAGTTGAATTCAAGCGGAGGAGATGAGAATCAGAAAGATGCATCCTCTGGTGATGAAGGGGATACCGATAATGGCGAGGATGAAGCAACATGA

Homology

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BLAST of CmoCh04G005060.1 vs. Swiss-Prot
Match: PKRI1_BOVIN (PRKR-interacting protein 1 OS=Bos taurus GN=PRKRIP1 PE=2 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.4e-07
Identity = 67/179 (37.43%), Postives = 89/179 (49.72%), Query Frame = 1


Query: 18  PPKPKSDTQLATTESNALVAYTPPVKEEDEDLEVKLRRIIDN----VPVR---------- 77
           PP+PK + Q      NA            E+ ++KL R++ N    VP+           
Sbjct: 11  PPRPKKEPQALIIPKNAA-----------EEQKLKLERLMKNPDKAVPIPEKMSEWAPRP 70

Query: 78  ----VSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQKKKEIAEFNMRREERLKA 137
               V +  GSSAG+GSG+FH YR +RR+E  R   MD   +K+K  AEF  R E    A
Sbjct: 71  PPEFVRDVMGSSAGAGSGEFHVYRHLRRREYQRQDYMDAMAEKQKLEAEFQKRLERNKIA 130

Query: 138 AEERTSKKRLKRQKKKQRR-KEKKSKL----NSSGGDENQKDASSGDE---GDTDNGED 171
           AEE+T+K+R KRQK K+++   KK KL     S    E Q+  SSG E   G  D  ED
Sbjct: 131 AEEQTAKRRKKRQKLKEKKLLAKKMKLEQKKQSEASSETQEQPSSGSEEASGTEDEEED 178

[Close]

BLAST of CmoCh04G005060.1 vs. Swiss-Prot
Match: PKRI1_MOUSE (PRKR-interacting protein 1 OS=Mus musculus GN=Prkrip1 PE=1 SV=2)

HSP 1 Score: 55.8 bits (133), Expect = 5.3e-07
Identity = 64/178 (35.96%), Postives = 89/178 (50.00%), Query Frame = 1


Query: 18  PPKPKSDTQLATTESNALVAYTPPVKEEDEDLEVKLRRIIDN----VPVR---------- 77
           PP+PK + Q      NA            E+ ++KL R++ N    VP+           
Sbjct: 11  PPRPKKEPQTLVIPKNAA-----------EEQKLKLERLMKNPDKAVPIPEKMNEWAPRA 70

Query: 78  ----VSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQKKKEIAEFNMRREERLKA 137
               V +  GSSAG+GSG+FH YR +RR+E  R   MD   +K+K  AEF  R E+   A
Sbjct: 71  PPEFVRDVMGSSAGAGSGEFHVYRHLRRREYQRQDYMDAMAEKQKLDAEFQKRLEKNKIA 130

Query: 138 AEERTSKKRLKRQKKKQRR-KEKKSKLNSSGGDE-----NQKDASSGDEGDTDNGEDE 172
           AEE+T+K+R KRQK K+++   KK KL      E      ++ ASS DE      E+E
Sbjct: 131 AEEQTAKRRKKRQKLKEKKLLAKKMKLEQKKQKEEPSQCQEQHASSSDEASETEEEEE 177

[Close]

BLAST of CmoCh04G005060.1 vs. Swiss-Prot
Match: PKRI1_HUMAN (PRKR-interacting protein 1 OS=Homo sapiens GN=PRKRIP1 PE=1 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 9.0e-07
Identity = 60/177 (33.90%), Postives = 89/177 (50.28%), Query Frame = 1


Query: 18  PPKPKSDTQLATTESNALVAYTPPVKEEDEDLEVKLRRIIDN----VPVR---------- 77
           PP+PK + Q      NA            E+ ++KL R++ N    VP+           
Sbjct: 11  PPRPKKEPQTLVIPKNAA-----------EEQKLKLERLMKNPDKAVPIPEKMSEWAPRP 70

Query: 78  ----VSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQKKKEIAEFNMRREERLKA 137
               V +  GSSAG+GSG+FH YR +RR+E  R   MD   +K+K  AEF  R E+   A
Sbjct: 71  PPEFVRDVMGSSAGAGSGEFHVYRHLRRREYQRQDYMDAMAEKQKLDAEFQKRLEKNKIA 130

Query: 138 AEERTSKKRLKRQKKKQRR------KEKKSKLNSSGGDENQKDASSGDEGDTDNGED 171
           AEE+T+K+R KRQK K+++      K ++ K    G  + Q  +SS +   T+  E+
Sbjct: 131 AEEQTAKRRKKRQKLKEKKLLAKKMKLEQKKQEGPGQPKEQGSSSSAEASGTEEEEE 176

[Close]

BLAST of CmoCh04G005060.1 vs. Swiss-Prot
Match: PKRI1_PONAB (PRKR-interacting protein 1 OS=Pongo abelii GN=PRKRIP1 PE=2 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 9.0e-07
Identity = 60/177 (33.90%), Postives = 89/177 (50.28%), Query Frame = 1


Query: 18  PPKPKSDTQLATTESNALVAYTPPVKEEDEDLEVKLRRIIDN----VPVR---------- 77
           PP+PK + Q      NA            E+ ++KL R++ N    VP+           
Sbjct: 11  PPRPKKEPQTLVIPKNAA-----------EEQKLKLERLMKNPDKAVPIPEKMSEWAPRP 70

Query: 78  ----VSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQKKKEIAEFNMRREERLKA 137
               V +  GSSAG+GSG+FH YR +RR+E  R   MD   +K+K  AEF  R E+   A
Sbjct: 71  PPEFVRDVMGSSAGAGSGEFHVYRHLRRREYQRQDYMDAMAEKQKLDAEFQKRLEKNKIA 130

Query: 138 AEERTSKKRLKRQKKKQRR------KEKKSKLNSSGGDENQKDASSGDEGDTDNGED 171
           AEE+T+K+R KRQK K+++      K ++ K    G  + Q  +SS +   T+  E+
Sbjct: 131 AEEQTAKRRKKRQKLKEKKLLAKKMKLEQKKQEGPGQPKEQGSSSSAEASGTEEEEE 176

[Close]

BLAST of CmoCh04G005060.1 vs. TrEMBL
Match: A0A0A0L705_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G199600 PE=4 SV=1)

HSP 1 Score: 283.9 bits (725), Expect = 1.3e-73
Identity = 162/173 (93.64%), Postives = 165/173 (95.38%), Query Frame = 1


Query: 1   MSTGKLKDGDRRLVIPMPPKPKSDTQLATTESNALVAYTPPVKEEDEDLEVKLRRIIDNV 60
           MSTGKLKDG+RRLVIPMPPKPK DTQLAT ESNALV YTPPVKEEDEDLEVKLRRIIDNV
Sbjct: 1   MSTGKLKDGERRLVIPMPPKPKPDTQLATAESNALVEYTPPVKEEDEDLEVKLRRIIDNV 60

Query: 61  PVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQKKKEIAEFNMRREERLKAA 120
           PVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQKKKEIAEFNMRREER+KAA
Sbjct: 61  PVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQKKKEIAEFNMRREERMKAA 120

Query: 121 EERTSKKRLKRQKKKQRRKEKKSKLNSSGGDENQKDASSGDEGDTDNGEDEAT 174
           EERTSKKRLKRQKKKQRRKEK+SKLN SG DENQKD SS DEGDTD GEDEAT
Sbjct: 121 EERTSKKRLKRQKKKQRRKEKRSKLN-SGEDENQKDESSDDEGDTDKGEDEAT 172

[Close]

BLAST of CmoCh04G005060.1 vs. TrEMBL
Match: A0A067LM79_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15460 PE=4 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 2.7e-50
Identity = 128/180 (71.11%), Postives = 150/180 (83.33%), Query Frame = 1


Query: 1   MSTGKLKDGDRRLVIP-------MPPKPKSDTQLATTESNALVAYTPPV-KEEDEDLEVK 60
           MSTG+ KD D ++V+        +PP+P +    A T S ALV Y+ PV KEE+EDLEVK
Sbjct: 1   MSTGRPKDSDLQVVVTPDKHVSGLPPRPPA----AGTASTALVEYSAPVFKEEEEDLEVK 60

Query: 61  LRRIIDNVPVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQKKKEIAEFNMR 120
           LRRII+NVPVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMD DYQK+KE+AEF+MR
Sbjct: 61  LRRIIENVPVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDADYQKRKELAEFSMR 120

Query: 121 REERLKAAEERTSKKRLKRQKKKQRRKEKKSKLNSSGGDENQKDASSGDEGDTDNGEDEA 173
           REERLKAAEERT+KKRLKRQKKKQ++KEKK KLN +GG+E+QK+ SS D+GD+D GE  A
Sbjct: 121 REERLKAAEERTAKKRLKRQKKKQKKKEKKVKLN-AGGEEHQKEESSDDDGDSDTGEPAA 175

[Close]

BLAST of CmoCh04G005060.1 vs. TrEMBL
Match: A0A0B0P818_GOSAR (PRKR-interacting 1 OS=Gossypium arboreum GN=F383_07187 PE=4 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 3.5e-50
Identity = 130/179 (72.63%), Postives = 148/179 (82.68%), Query Frame = 1


Query: 1   MSTGKLKDGDRRLVIP-----MPPKPKSDTQLATTESNALVAYTPPV-KEEDEDLEVKLR 60
           MSTG+ KDGD +L +      +PP+P S T      S A+V Y  P  KEE+EDLEVKLR
Sbjct: 1   MSTGRPKDGDTQLAVVEPKSGLPPRPPSTT------STAIVEYEKPAFKEEEEDLEVKLR 60

Query: 61  RIIDNVPVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQKKKEIAEFNMRRE 120
           RII+NVPVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQK+KEIAEFNMRRE
Sbjct: 61  RIIENVPVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQKRKEIAEFNMRRE 120

Query: 121 ERLKAAEERTSKKRLKRQKKKQRRKEKKSKLNSSGGDENQKDASSGDEGDTDNGEDEAT 174
           ERLKAAEERT+KKRLKRQKKKQR+KEKK KL++ GG EN+K+ SS DE D+++  DEAT
Sbjct: 121 ERLKAAEERTAKKRLKRQKKKQRKKEKKMKLSAEGG-ENKKEESSDDEADSEH--DEAT 170

[Close]

BLAST of CmoCh04G005060.1 vs. TrEMBL
Match: B9RY95_RICCO (Expressed protein, putative OS=Ricinus communis GN=RCOM_0811390 PE=4 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 4.6e-50
Identity = 125/178 (70.22%), Postives = 148/178 (83.15%), Query Frame = 1


Query: 1   MSTGKLKDGDRRLVIP-------MPPKPKSDTQLATTESNALVAYTPPV-KEEDEDLEVK 60
           MSTG+ +D D +L++        +PP+P        T S ALV YT P+ KEE+EDLEVK
Sbjct: 1   MSTGRPEDNDLQLMVQPEKPKPALPPRPLVAAMGTGTGSTALVEYTAPMLKEEEEDLEVK 60

Query: 61  LRRIIDNVPVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQKKKEIAEFNMR 120
           LRRII+NVPVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARM+VDYQK+KE+AEFNMR
Sbjct: 61  LRRIIENVPVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMEVDYQKRKELAEFNMR 120

Query: 121 REERLKAAEERTSKKRLKRQKKKQRRKEKKSKLNSSGGDENQKDASSGDEGDTDNGED 171
           REE+LKAAEERT+KKRLKRQ+KKQR+KEKK K+N +GG+E QK  SS DEGD+D+GE+
Sbjct: 121 REEKLKAAEERTAKKRLKRQRKKQRKKEKKMKVN-AGGEEQQKHESSDDEGDSDDGEE 177

[Close]

BLAST of CmoCh04G005060.1 vs. TrEMBL
Match: A0A0D2RKD2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G235000 PE=4 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 1.7e-49
Identity = 129/179 (72.07%), Postives = 147/179 (82.12%), Query Frame = 1


Query: 1   MSTGKLKDGDRRLVIP-----MPPKPKSDTQLATTESNALVAYTPPV-KEEDEDLEVKLR 60
           MSTG+ KDGD +L +      +PP+P S T      S A+V Y  P  KEE+EDLEVKLR
Sbjct: 1   MSTGRPKDGDTQLAVVEPKSGLPPRPPSTT------STAIVEYEKPAFKEEEEDLEVKLR 60

Query: 61  RIIDNVPVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQKKKEIAEFNMRRE 120
           RII+NVPVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQK+KEIAEFNMRRE
Sbjct: 61  RIIENVPVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQKRKEIAEFNMRRE 120

Query: 121 ERLKAAEERTSKKRLKRQKKKQRRKEKKSKLNSSGGDENQKDASSGDEGDTDNGEDEAT 174
           ERLKAAEERT+KKRLKRQKKKQR+KEKK K ++ GG EN+K+ SS DE D+++  DEAT
Sbjct: 121 ERLKAAEERTAKKRLKRQKKKQRKKEKKMKSSAEGG-ENKKEESSDDEADSEH--DEAT 170

[Close]

BLAST of CmoCh04G005060.1 vs. TAIR10
Match: AT2G15270.1 (AT2G15270.1 unknown protein)

HSP 1 Score: 162.5 bits (410), Expect = 2.3e-40
Identity = 109/180 (60.56%), Postives = 134/180 (74.44%), Query Frame = 1


Query: 1   MSTGKLKDGDRRLVIPMPPKPKSDTQLATTE--------SNALVAYTPPVK-EEDEDLEV 60
           MS+GK K GD RLV+       + T  A  E        S+++V Y PPV  E++EDLEV
Sbjct: 1   MSSGKPKQGDTRLVVA------ATTASALMEAKKADHGGSSSIVEYKPPVMLEDEEDLEV 60

Query: 61  KLRRIIDNVPVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQKKKEIAEFNM 120
           KLRRI++NVPVRVSNTSGSSAGSGSGDFHQYRQMRR+EQDRL RMD+DY K+ ++AEF +
Sbjct: 61  KLRRILENVPVRVSNTSGSSAGSGSGDFHQYRQMRRREQDRLTRMDIDYNKRLKMAEFTI 120

Query: 121 RREERLKAAEERTSKKRLKRQKKKQRRKEKKSKLNSSGGDENQKDASSGDEGDTDNGEDE 172
           RREE+ KAAEE+TSKKRLKRQKKKQ+++EKK K N++  +E  K    G E  +D GEDE
Sbjct: 121 RREEKQKAAEEKTSKKRLKRQKKKQKKQEKKQKPNTT--EEEVKQPRVG-EISSDEGEDE 171

[Close]

BLAST of CmoCh04G005060.1 vs. NCBI nr
Match: gi|778680024|ref|XP_011651236.1| (PREDICTED: PRKR-interacting protein 1 [Cucumis sativus])

HSP 1 Score: 283.9 bits (725), Expect = 1.9e-73
Identity = 162/173 (93.64%), Postives = 165/173 (95.38%), Query Frame = 1


Query: 1   MSTGKLKDGDRRLVIPMPPKPKSDTQLATTESNALVAYTPPVKEEDEDLEVKLRRIIDNV 60
           MSTGKLKDG+RRLVIPMPPKPK DTQLAT ESNALV YTPPVKEEDEDLEVKLRRIIDNV
Sbjct: 1   MSTGKLKDGERRLVIPMPPKPKPDTQLATAESNALVEYTPPVKEEDEDLEVKLRRIIDNV 60

Query: 61  PVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQKKKEIAEFNMRREERLKAA 120
           PVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQKKKEIAEFNMRREER+KAA
Sbjct: 61  PVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQKKKEIAEFNMRREERMKAA 120

Query: 121 EERTSKKRLKRQKKKQRRKEKKSKLNSSGGDENQKDASSGDEGDTDNGEDEAT 174
           EERTSKKRLKRQKKKQRRKEK+SKLN SG DENQKD SS DEGDTD GEDEAT
Sbjct: 121 EERTSKKRLKRQKKKQRRKEKRSKLN-SGEDENQKDESSDDEGDTDKGEDEAT 172

[Close]

BLAST of CmoCh04G005060.1 vs. NCBI nr
Match: gi|659112331|ref|XP_008456169.1| (PREDICTED: PRKR-interacting protein 1 [Cucumis melo])

HSP 1 Score: 280.8 bits (717), Expect = 1.6e-72
Identity = 159/173 (91.91%), Postives = 166/173 (95.95%), Query Frame = 1


Query: 1   MSTGKLKDGDRRLVIPMPPKPKSDTQLATTESNALVAYTPPVKEEDEDLEVKLRRIIDNV 60
           MSTGKLKDG+RRLVIPMPPKPK +TQLATTESNALV YTPPVKEEDEDLEVKLRRIIDNV
Sbjct: 1   MSTGKLKDGERRLVIPMPPKPKPETQLATTESNALVEYTPPVKEEDEDLEVKLRRIIDNV 60

Query: 61  PVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQKKKEIAEFNMRREERLKAA 120
           PVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQKKKEIAEFNMRREER+KAA
Sbjct: 61  PVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQKKKEIAEFNMRREERMKAA 120

Query: 121 EERTSKKRLKRQKKKQRRKEKKSKLNSSGGDENQKDASSGDEGDTDNGEDEAT 174
           EERT+KKRLKRQKKKQRRKEK+SK+N SG DENQK+ SS DEGDTD GEDEAT
Sbjct: 121 EERTAKKRLKRQKKKQRRKEKRSKMN-SGEDENQKEESSDDEGDTDKGEDEAT 172

[Close]

BLAST of CmoCh04G005060.1 vs. NCBI nr
Match: gi|802540316|ref|XP_012075843.1| (PREDICTED: PRKR-interacting protein 1 [Jatropha curcas])

HSP 1 Score: 206.5 bits (524), Expect = 3.9e-50
Identity = 128/180 (71.11%), Postives = 150/180 (83.33%), Query Frame = 1


Query: 1   MSTGKLKDGDRRLVIP-------MPPKPKSDTQLATTESNALVAYTPPV-KEEDEDLEVK 60
           MSTG+ KD D ++V+        +PP+P +    A T S ALV Y+ PV KEE+EDLEVK
Sbjct: 1   MSTGRPKDSDLQVVVTPDKHVSGLPPRPPA----AGTASTALVEYSAPVFKEEEEDLEVK 60

Query: 61  LRRIIDNVPVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQKKKEIAEFNMR 120
           LRRII+NVPVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMD DYQK+KE+AEF+MR
Sbjct: 61  LRRIIENVPVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDADYQKRKELAEFSMR 120

Query: 121 REERLKAAEERTSKKRLKRQKKKQRRKEKKSKLNSSGGDENQKDASSGDEGDTDNGEDEA 173
           REERLKAAEERT+KKRLKRQKKKQ++KEKK KLN +GG+E+QK+ SS D+GD+D GE  A
Sbjct: 121 REERLKAAEERTAKKRLKRQKKKQKKKEKKVKLN-AGGEEHQKEESSDDDGDSDTGEPAA 175

[Close]

BLAST of CmoCh04G005060.1 vs. NCBI nr
Match: gi|728841762|gb|KHG21205.1| (PRKR-interacting 1 [Gossypium arboreum])

HSP 1 Score: 206.1 bits (523), Expect = 5.1e-50
Identity = 130/179 (72.63%), Postives = 148/179 (82.68%), Query Frame = 1


Query: 1   MSTGKLKDGDRRLVIP-----MPPKPKSDTQLATTESNALVAYTPPV-KEEDEDLEVKLR 60
           MSTG+ KDGD +L +      +PP+P S T      S A+V Y  P  KEE+EDLEVKLR
Sbjct: 1   MSTGRPKDGDTQLAVVEPKSGLPPRPPSTT------STAIVEYEKPAFKEEEEDLEVKLR 60

Query: 61  RIIDNVPVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQKKKEIAEFNMRRE 120
           RII+NVPVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQK+KEIAEFNMRRE
Sbjct: 61  RIIENVPVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQKRKEIAEFNMRRE 120

Query: 121 ERLKAAEERTSKKRLKRQKKKQRRKEKKSKLNSSGGDENQKDASSGDEGDTDNGEDEAT 174
           ERLKAAEERT+KKRLKRQKKKQR+KEKK KL++ GG EN+K+ SS DE D+++  DEAT
Sbjct: 121 ERLKAAEERTAKKRLKRQKKKQRKKEKKMKLSAEGG-ENKKEESSDDEADSEH--DEAT 170

[Close]

BLAST of CmoCh04G005060.1 vs. NCBI nr
Match: gi|255555285|ref|XP_002518679.1| (PREDICTED: PRKR-interacting protein 1 [Ricinus communis])

HSP 1 Score: 205.7 bits (522), Expect = 6.6e-50
Identity = 125/178 (70.22%), Postives = 148/178 (83.15%), Query Frame = 1


Query: 1   MSTGKLKDGDRRLVIP-------MPPKPKSDTQLATTESNALVAYTPPV-KEEDEDLEVK 60
           MSTG+ +D D +L++        +PP+P        T S ALV YT P+ KEE+EDLEVK
Sbjct: 1   MSTGRPEDNDLQLMVQPEKPKPALPPRPLVAAMGTGTGSTALVEYTAPMLKEEEEDLEVK 60

Query: 61  LRRIIDNVPVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQKKKEIAEFNMR 120
           LRRII+NVPVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARM+VDYQK+KE+AEFNMR
Sbjct: 61  LRRIIENVPVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMEVDYQKRKELAEFNMR 120

Query: 121 REERLKAAEERTSKKRLKRQKKKQRRKEKKSKLNSSGGDENQKDASSGDEGDTDNGED 171
           REE+LKAAEERT+KKRLKRQ+KKQR+KEKK K+N +GG+E QK  SS DEGD+D+GE+
Sbjct: 121 REEKLKAAEERTAKKRLKRQRKKQRKKEKKMKVN-AGGEEQQKHESSDDEGDSDDGEE 177

The following BLAST results are available for this feature:

BLAST of CmoCh04G005060.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PKRI1_BOVIN	1.4e-07	37.43	PRKR-interacting protein 1 OS=Bos taurus GN=PRKRIP1 PE=2 SV=1	[more]
PKRI1_MOUSE	5.3e-07	35.96	PRKR-interacting protein 1 OS=Mus musculus GN=Prkrip1 PE=1 SV=2	[more]
PKRI1_HUMAN	9.0e-07	33.90	PRKR-interacting protein 1 OS=Homo sapiens GN=PRKRIP1 PE=1 SV=1	[more]
PKRI1_PONAB	9.0e-07	33.90	PRKR-interacting protein 1 OS=Pongo abelii GN=PRKRIP1 PE=2 SV=1	[more]

BLAST of CmoCh04G005060.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L705_CUCSA	1.3e-73	93.64	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G199600 PE=4 SV=1	[more]
A0A067LM79_JATCU	2.7e-50	71.11	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15460 PE=4 SV=1	[more]
A0A0B0P818_GOSAR	3.5e-50	72.63	PRKR-interacting 1 OS=Gossypium arboreum GN=F383_07187 PE=4 SV=1	[more]
B9RY95_RICCO	4.6e-50	70.22	Expressed protein, putative OS=Ricinus communis GN=RCOM_0811390 PE=4 SV=1	[more]
A0A0D2RKD2_GOSRA	1.7e-49	72.07	Uncharacterized protein OS=Gossypium raimondii GN=B456_005G235000 PE=4 SV=1	[more]

BLAST of CmoCh04G005060.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G15270.1	2.3e-40	60.56	unknown protein	[more]

BLAST of CmoCh04G005060.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778680024\|ref\|XP_011651236.1\|	1.9e-73	93.64	PREDICTED: PRKR-interacting protein 1 [Cucumis sativus]	[more]
gi\|659112331\|ref\|XP_008456169.1\|	1.6e-72	91.91	PREDICTED: PRKR-interacting protein 1 [Cucumis melo]	[more]
gi\|802540316\|ref\|XP_012075843.1\|	3.9e-50	71.11	PREDICTED: PRKR-interacting protein 1 [Jatropha curcas]	[more]
gi\|728841762\|gb\|KHG21205.1\|	5.1e-50	72.63	PRKR-interacting 1 [Gossypium arboreum]	[more]
gi\|255555285\|ref\|XP_002518679.1\|	6.6e-50	70.22	PREDICTED: PRKR-interacting protein 1 [Ricinus communis]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR009548	DUF1168

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh04G005060	CmoCh04G005060	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh04G005060.1	CmoCh04G005060.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh04G005060.1.exon.1	CmoCh04G005060.1.exon.1	exon
CmoCh04G005060.1.exon.2	CmoCh04G005060.1.exon.2	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh04G005060.1.CDS.1	CmoCh04G005060.1.CDS.1	CDS
CmoCh04G005060.1.CDS.2	CmoCh04G005060.1.CDS.2	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh04G005060.1.three_prime_UTR.1	CmoCh04G005060.1.three_prime_UTR.1	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009548	Protein of unknown function DUF1168	PANTHER	PTHR13507	UNCHARACTERIZED	coord: 2..172 score: 2.5
IPR009548	Protein of unknown function DUF1168	PFAM	PF06658	DUF1168	coord: 54..170 score: 1.0
None	No IPR available	unknown	Coil	Coil	coord: 112..146 scor
None	No IPR available	PANTHER	PTHR13507:SF0	PRKR-INTERACTING PROTEIN 1	coord: 2..172 score: 2.5