CmoCh04G004900.1 (mRNA) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G004900.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein
Location	Cmo_Chr04 : 2443462 .. 2444508 (-)
Sequence length	706

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GCAAATTTTGCAAAATTTTCTCTGTTTCGTCTTTCGTCTCGCTTCAAACTTCAAAACCCTTTTCTCATTTTCAACCCTAAACCCTAAAAGGATGATCGGCGCTTTCCGGAGGAGCTCCGGGCTGTCTGGATTGTTGCATTTTCGCCGTTCTTCTCAGTTGAAAGGTTCTAAGGCTTTTGAAGCTACTGCGATCGTGAGGAAGCAATCTCAGCCCATTCGGCCGTATTTCCGTTTGCCGGATTCTTTCAGGAAGACGAAGGAGGTTGGTGTTTTTCCATCGTTGCAGCACTCGTCTGTGTGGTCGGTTATTTCGTTTGCGAAGGTTGAGTTTCTCGAATGGTATTTGGCTATGGTGAAATGTCGCCCTGTTCTTACGAAGAGTATCACTTCTGCGCTTATTTACACGGCTGCTGATTTGTCGTCTCAGGTGAATTGTTTTGGAGCTTGCATCTACTCATGATGTGTTTGATGATTTGAAACCTCTGTTTTTAGGTTTTTTTTTTTATAGTCATTTTCTCTGTTCTTTGATTGCTCTTCATAGAATAATTTTCTTCTCGATCAAGGCTTTTGAACATCTGCATTCGTTAGAGATCGCCACTTCGAATGCTCTGGTTTGGGAATCAAATATACTTTGATGAGTCCTTTTCTCTGTTTTTAACTGTTCATCGTGCAACTTATTGTTCTCGTCTACTACTATTAATCCGTTGCTCTCATTGGAGATTGTAATTGTAAATGCTGCTCTGATTTTGGAATCAAATGTTCTTTCAGACCATTGCTCTGCCATCTTCAGAGCCATATGATTTAGTTCGAACACTACGTATGGCTGGATATGGCCTGCTGATTCTAGGGCCATCTCTCCATTACTGGTTTAACTTCATGTCAAGACTCTTCCCCAAGAAGGACATCTTCTCCACCTTGAAGAAAATGGCCTTGGGCCAGAGCCTCTATGGCCCTTCCATGACAGTCATTTTCTTCTCCATGAATGCATTTCTCCAAGGTACGCCATTTTCCACAACCTGCTTCATTTCTCAACCTTTAGATTACTAA

mRNA sequence

GCAAATTTTGCAAAATTTTCTCTGTTTCGTCTTTCGTCTCGCTTCAAACTTCAAAACCCTTTTCTCATTTTCAACCCTAAACCCTAAAAGGATGATCGGCGCTTTCCGGAGGAGCTCCGGGCTGTCTGGATTGTTGCATTTTCGCCGTTCTTCTCAGTTGAAAGGTTCTAAGGCTTTTGAAGCTACTGCGATCGTGAGGAAGCAATCTCAGCCCATTCGGCCGTATTTCCGTTTGCCGGATTCTTTCAGGAAGACGAAGGAGGTTGGTGTTTTTCCATCGTTGCAGCACTCGTCTGTGTGGTCGGTTATTTCGTTTGCGAAGGTTGAGTTTCTCGAATGGTATTTGGCTATGGTGAAATGTCGCCCTGTTCTTACGAAGAGTATCACTTCTGCGCTTATTTACACGGCTGCTGATTTGTCGTCTCAGACCATTGCTCTGCCATCTTCAGAGCCATATGATTTAGTTCGAACACTACGTATGGCTGGATATGGCCTGCTGATTCTAGGGCCATCTCTCCATTACTGGTTTAACTTCATGTCAAGACTCTTCCCCAAGAAGGACATCTTCTCCACCTTGAAGAAAATGGCCTTGGGCCAGAGCCTCTATGGCCCTTCCATGACAGTCATTTTCTTCTCCATGAATGCATTTCTCCAAGGTACGCCATTTTCCACAACCTGCTTCATTTCTCAACCTTTAGATTACTAA

Coding sequence (CDS)

ATGATCGGCGCTTTCCGGAGGAGCTCCGGGCTGTCTGGATTGTTGCATTTTCGCCGTTCTTCTCAGTTGAAAGGTTCTAAGGCTTTTGAAGCTACTGCGATCGTGAGGAAGCAATCTCAGCCCATTCGGCCGTATTTCCGTTTGCCGGATTCTTTCAGGAAGACGAAGGAGGTTGGTGTTTTTCCATCGTTGCAGCACTCGTCTGTGTGGTCGGTTATTTCGTTTGCGAAGGTTGAGTTTCTCGAATGGTATTTGGCTATGGTGAAATGTCGCCCTGTTCTTACGAAGAGTATCACTTCTGCGCTTATTTACACGGCTGCTGATTTGTCGTCTCAGACCATTGCTCTGCCATCTTCAGAGCCATATGATTTAGTTCGAACACTACGTATGGCTGGATATGGCCTGCTGATTCTAGGGCCATCTCTCCATTACTGGTTTAACTTCATGTCAAGACTCTTCCCCAAGAAGGACATCTTCTCCACCTTGAAGAAAATGGCCTTGGGCCAGAGCCTCTATGGCCCTTCCATGACAGTCATTTTCTTCTCCATGAATGCATTTCTCCAAGGTACGCCATTTTCCACAACCTGCTTCATTTCTCAACCTTTAGATTACTAA

Homology

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BLAST of CmoCh04G004900.1 vs. Swiss-Prot
Match: PX24D_DICDI (PXMP2/4 family protein 4 OS=Dictyostelium discoideum GN=DDB_G0290631 PE=3 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.9e-12
Identity = 38/108 (35.19%), Postives = 57/108 (52.78%), Query Frame = 1


Query: 84  YLAMVKCRPVLTKSITSALIYTAADLSSQTIAL--PSSEPYDLVRTLRMAGYGLLILGPS 143
           YL+ +   PV TK++TS  +Y  +D   Q I L     + YD  R++RMA +G  + GP 
Sbjct: 15  YLSQLHKYPVATKAVTSGFLYLISDSLVQGIELSRDKDKKYDFKRSMRMAVFGFAVTGPL 74

Query: 144 LHYWFNFMSRLFPKKDIFSTLKKMALGQSLYGPSMTVIFFSMNAFLQG 190
            HYWF ++ + FPKK       K+ + Q +  P    +FFS    L+G
Sbjct: 75  FHYWFKYLDKHFPKKSYRHAFIKLTIDQVVCSPVFNFLFFSGMGILEG 122

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BLAST of CmoCh04G004900.1 vs. Swiss-Prot
Match: SYM1_NEUCR (Protein sym-1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=sym-1 PE=3 SV=2)

HSP 1 Score: 65.9 bits (159), Expect = 6.0e-10
Identity = 36/113 (31.86%), Postives = 62/113 (54.87%), Query Frame = 1


Query: 81  LEWYLAMVKCRPVLTKSITSALIYTAADLSSQTIA-LPSSEPYDLVRTLRMAGYGLLILG 140
           L WY A +  RP+LT+++T+++++   D+++Q +        +DL RT RM  YG  + G
Sbjct: 2   LSWYKAQLAARPLLTQAVTTSILFGVGDVAAQQLVDRRGLSNHDLTRTGRMVLYGGAVFG 61

Query: 141 PSLHYWFNFMSR--LFPKKDIFSTLKKMALGQSLYGPSMTVIFFSMNAFLQGT 191
           P+   WF F+ +  + P     + L ++A  Q L+ P+   IF    A L+GT
Sbjct: 62  PAATTWFRFLQKRVVVPGSTNKTILARVAADQGLFAPTFIGIFLGSMAVLEGT 114

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BLAST of CmoCh04G004900.1 vs. Swiss-Prot
Match: SYM1_GIBZE (Protein SYM1 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=SYM1 PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 7.9e-10
Identity = 37/113 (32.74%), Postives = 64/113 (56.64%), Query Frame = 1


Query: 80  FLEWYLAMVKCRPVLTKSITSALIYTAADLSSQTIALP-SSEPYDLVRTLRMAGYGLLIL 139
           F+ WY + +  RP+LT+S+T+A ++   D+++Q +     ++ +DLVRT RMA YG  + 
Sbjct: 4   FIRWYNSRLAARPLLTQSVTTAFLFATGDVTAQQLVEKRGAQKHDLVRTGRMALYGGFVF 63

Query: 140 GPSLHYWFNFMSRLFPKKD--IFSTLKKMALGQSLYGPSMTVIFFSMNAFLQG 190
           GP    WF F++R    ++      L ++A  Q  + P M  +F S  A ++G
Sbjct: 64  GPVATTWFAFLARRVNVRNNKKAEVLARVACDQLGFAPVMIGVFLSSMATMEG 116

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BLAST of CmoCh04G004900.1 vs. Swiss-Prot
Match: SYM1_ASPOR (Protein sym1 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=sym1 PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 7.9e-10
Identity = 38/110 (34.55%), Postives = 62/110 (56.36%), Query Frame = 1


Query: 83  WYLAMVKCRPVLTKSITSALIYTAAD-LSSQTIALPSSEPYDLVRTLRMAGYGLLILGPS 142
           WY A +  +P+LT S+TSA+++ + D L+ Q +     E +D  RT RMA YG  I GP+
Sbjct: 4   WYQAKLAKQPILTASVTSAVLFGSGDVLAQQVVDRKGLEKHDFARTGRMALYGGAIFGPA 63

Query: 143 LHYWFNFMSRLFPKKDIFSTL-KKMALGQSLYGPSMTVIFFSMNAFLQGT 191
              WF F+ R    K+  +T+  ++A  Q L+ P+    F +  A ++G+
Sbjct: 64  ATTWFGFLQRNVVLKNSKATIVARVAADQCLFTPTHLTCFLTSMAIMEGS 113

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BLAST of CmoCh04G004900.1 vs. Swiss-Prot
Match: PXMP2_MOUSE (Peroxisomal membrane protein 2 OS=Mus musculus GN=Pxmp2 PE=1 SV=2)

HSP 1 Score: 60.5 bits (145), Expect = 2.5e-08
Identity = 37/131 (28.24%), Postives = 66/131 (50.38%), Query Frame = 1


Query: 62  PSLQHSSVWSVISFAKVEFLEWYLAMVKCRPVLTKSITSALIYTAADLSSQTIALPSSEP 121
           P+     V S +       L  YL ++K  PVLTK+++S ++    +L +QTI     + 
Sbjct: 3   PAASRLRVESELGSLPKRALAQYLLLLKLYPVLTKAVSSGILSALGNLLAQTIEKKQRKD 62

Query: 122 YDLVRT---LRMAGYGLLILGPSLHYWFNFMSRLFPKKDIFSTLKKMALGQSLYGPSMTV 181
             L+     LR   YGL + GP  HY + FM    P +  ++++K++ L +  + P+  +
Sbjct: 63  SRLLEVSGLLRYLVYGLFVTGPLSHYLYLFMEYSVPPEVPWASVKRLLLDRLFFAPTFLL 122

Query: 182 IFFSMNAFLQG 190
           +FF +   L+G
Sbjct: 123 LFFFVMNLLEG 133

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BLAST of CmoCh04G004900.1 vs. TrEMBL
Match: A0A0A0KT72_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G000970 PE=3 SV=1)

HSP 1 Score: 306.6 bits (784), Expect = 2.3e-80
Identity = 154/190 (81.05%), Postives = 169/190 (88.95%), Query Frame = 1


Query: 1   MIGAFRRSSGLSGLLHFRRSSQLKGSKA-FEATAIVRKQSQPIRPYFRLPDSFRKTKEVG 60
           MIGA RRSSG+SGLLHFR  S LKGSKA FEATAIVRKQ+QPIRPYFRLPDSFRK KEVG
Sbjct: 1   MIGALRRSSGISGLLHFRHFSHLKGSKAAFEATAIVRKQNQPIRPYFRLPDSFRKAKEVG 60

Query: 61  VFPSLQHSSVWSVISFAKVEFLEWYLAMVKCRPVLTKSITSALIYTAADLSSQTIALPSS 120
           VF S QHSS  S  S  KVEFLEWYLAM+KCRPVLTKSITSA+IYTAADLSSQTI+L SS
Sbjct: 61  VFSSGQHSSASSFFSIVKVEFLEWYLAMIKCRPVLTKSITSAIIYTAADLSSQTISLSSS 120

Query: 121 EPYDLVRTLRMAGYGLLILGPSLHYWFNFMSRLFPKKDIFSTLKKMALGQSLYGPSMTVI 180
           E YDL+RT+RMAGYG+L+LGPSLHYWFN MS+LFP+KD+FST KKMA+GQ L+GP MT I
Sbjct: 121 ESYDLIRTVRMAGYGMLVLGPSLHYWFNLMSKLFPQKDLFSTFKKMAMGQGLFGPFMTAI 180

Query: 181 FFSMNAFLQG 190
           FFS+NAFLQG
Sbjct: 181 FFSLNAFLQG 190

[Close]

BLAST of CmoCh04G004900.1 vs. TrEMBL
Match: W9RXU9_9ROSA (PXMP2/4 family protein 4 OS=Morus notabilis GN=L484_011519 PE=3 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 8.7e-48
Identity = 114/199 (57.29%), Postives = 134/199 (67.34%), Query Frame = 1


Query: 1   MIGAFRRSSGLSGLLHFRRSS--QLKGSKAFEATAIVRKQSQPIRPYFRLPDSFRKTKEV 60
           M GAF RS   +    FRR S   + G       + V  Q+ P R Y R P   RK ++ 
Sbjct: 1   MNGAFLRSGTGTVPRLFRRYSLTDVLGESGGALASFVCSQT-PSRAYLRFPHFMRKARDC 60

Query: 61  GVFPSLQHSSVWSVISFA--------KVEFLEWYLAMVKCRPVLTKSITSALIYTAADLS 120
              PSL  S+  S  S +        +V  + WYL MVKCRP+LTKS+TSALIYTAADLS
Sbjct: 61  DFSPSLLSSAFSSSSSSSTAAAAKAKEVGIIGWYLGMVKCRPILTKSVTSALIYTAADLS 120

Query: 121 SQTIALPSSEPYDLVRTLRMAGYGLLILGPSLHYWFNFMSRLFPKKDIFSTLKKMALGQS 180
           SQ I   SSE YD VRTLRMAGYGLL+LGPSLHYWFNFMSRLFP++D+ STLKKMA+GQ 
Sbjct: 121 SQIIPQQSSESYDFVRTLRMAGYGLLVLGPSLHYWFNFMSRLFPRRDLLSTLKKMAMGQG 180

Query: 181 LYGPSMTVIFFSMNAFLQG 190
           +YGP+MTVIFFS+NA LQG
Sbjct: 181 IYGPAMTVIFFSINARLQG 198

[Close]

BLAST of CmoCh04G004900.1 vs. TrEMBL
Match: A0A072VQF9_MEDTR (Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein OS=Medicago truncatula GN=MTR_1g106775 PE=3 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 1.1e-47
Identity = 99/152 (65.13%), Postives = 123/152 (80.92%), Query Frame = 1


Query: 43  RPYFRLPDSF--RKTKEVGVFPSL---QHSSVWSVISFAKVEFLEWYLAMVKCRPVLTKS 102
           +PYFRLP++F  +KT++  + PS      SS  S  S  KV F+ WYL M+K RP+LTKS
Sbjct: 39  KPYFRLPNNFFTKKTRQCEISPSSFSSSSSSSSSTASIPKVGFVGWYLGMIKSRPILTKS 98

Query: 103 ITSALIYTAADLSSQTIALPSSEPYDLVRTLRMAGYGLLILGPSLHYWFNFMSRLFPKKD 162
           +TSALIYTAADLSSQTI   SS+ +D +RTLRMAGYG++ILGPSLH+WFNF+S+LFP +D
Sbjct: 99  VTSALIYTAADLSSQTIERQSSKSFDFIRTLRMAGYGMIILGPSLHFWFNFVSKLFPGRD 158

Query: 163 IFSTLKKMALGQSLYGPSMTVIFFSMNAFLQG 190
           IFSTLKKMA+GQ +YGP+MTVIFFS+NA LQG
Sbjct: 159 IFSTLKKMAMGQGIYGPAMTVIFFSLNAGLQG 190

[Close]

BLAST of CmoCh04G004900.1 vs. TrEMBL
Match: R0I7M1_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10015735mg PE=3 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 1.5e-47
Identity = 104/170 (61.18%), Postives = 122/170 (71.76%), Query Frame = 1


Query: 23  LKGSKAFEATAIVRKQSQPIRPYFRLPDSFRKTKEVGVFPSLQH---SSVWSVISFAKVE 82
           ++ +KA E     +      RPYFR      + KE G  PS      SS  S  S +KV 
Sbjct: 17  IRRNKAAETYPFAKTGLSQSRPYFRSRQLLGRAKETGASPSPSLGFCSSSSSSASISKVG 76

Query: 83  FLEWYLAMVKCRPVLTKSITSALIYTAADLSSQTIALPSSEPYDLVRTLRMAGYGLLILG 142
           F+ WYL MVK RPVLTKS+TS+LIY AADLSSQTIA  SSE YDLVRT RM GYGL +LG
Sbjct: 77  FIGWYLGMVKSRPVLTKSLTSSLIYIAADLSSQTIAKSSSESYDLVRTARMGGYGLFVLG 136

Query: 143 PSLHYWFNFMSRLFPKKDIFSTLKKMALGQSLYGPSMTVIFFSMNAFLQG 190
           P+LHYWFNFMSRLFPKKD+ +T KKMA+GQ++YGP+MTVIFFS+NA LQG
Sbjct: 137 PTLHYWFNFMSRLFPKKDLITTFKKMAMGQTIYGPTMTVIFFSLNASLQG 186

[Close]

BLAST of CmoCh04G004900.1 vs. TrEMBL
Match: M5VMX2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010201mg PE=3 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 1.5e-47
Identity = 106/196 (54.08%), Postives = 143/196 (72.96%), Query Frame = 1


Query: 1   MIGAFRRSSGLSGLLHFRRSSQLKGSKAFEATAIVRKQSQPIRPYFRLPDSFRKTKEVGV 60
           M   FRR++ ++ LLH    +   G++      +++ Q+Q  + Y R P  FRK ++  +
Sbjct: 1   MTAVFRRNTNITRLLHKHSITDPIGART-----LLQSQTQS-KAYLRFPQVFRKARDYDL 60

Query: 61  FPSLQHSSVWS------VISFAKVEFLEWYLAMVKCRPVLTKSITSALIYTAADLSSQTI 120
            PS+  S+  S        S +K+ F+ WYL M++ RP+LTKS+T+ALIYTAADLSSQT+
Sbjct: 61  SPSVFSSAFSSSKSSAETTSVSKLGFVGWYLGMLQHRPILTKSVTAALIYTAADLSSQTL 120

Query: 121 ALPS-SEPYDLVRTLRMAGYGLLILGPSLHYWFNFMSRLFPKKDIFSTLKKMALGQSLYG 180
           A  S SE YD VRTLRMAGYG+L+LGPS+H+WFNFMSR+FPK+DIFSTLKKMA+GQ+LYG
Sbjct: 121 AKSSFSESYDAVRTLRMAGYGMLVLGPSMHFWFNFMSRVFPKRDIFSTLKKMAMGQTLYG 180

Query: 181 PSMTVIFFSMNAFLQG 190
           P+MTV+FFS+NA LQG
Sbjct: 181 PAMTVVFFSLNACLQG 190

[Close]

BLAST of CmoCh04G004900.1 vs. TAIR10
Match: AT2G14860.1 (AT2G14860.1 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein)

HSP 1 Score: 187.6 bits (475), Expect = 7.7e-48
Identity = 95/147 (64.63%), Postives = 112/147 (76.19%), Query Frame = 1


Query: 43  RPYFRLPDSFRKTKEVGVFPSLQHSSVWSVISFAKVEFLEWYLAMVKCRPVLTKSITSAL 102
           RPYFR      + KE GV PS       S  S +++ F+ WYL MVK  PV+TKS+TS+L
Sbjct: 37  RPYFRSRQLLERAKETGVSPS-PSLGFSSSSSPSRIGFVGWYLGMVKSHPVVTKSVTSSL 96

Query: 103 IYTAADLSSQTIALPSSEPYDLVRTLRMAGYGLLILGPSLHYWFNFMSRLFPKKDIFSTL 162
           IY AADLSSQTIA  SSE YDLVRT RM GYGL +LGP+LHYWFNFMSRLFPK+D+ +T 
Sbjct: 97  IYIAADLSSQTIAKTSSESYDLVRTARMGGYGLFVLGPTLHYWFNFMSRLFPKQDLITTF 156

Query: 163 KKMALGQSLYGPSMTVIFFSMNAFLQG 190
           KKMA+GQ++YGP MTVIFFS+NA LQG
Sbjct: 157 KKMAMGQTIYGPIMTVIFFSLNASLQG 182

[Close]

BLAST of CmoCh04G004900.1 vs. TAIR10
Match: AT4G33905.1 (AT4G33905.1 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein)

HSP 1 Score: 179.9 bits (455), Expect = 1.6e-45
Identity = 91/147 (61.90%), Postives = 109/147 (74.15%), Query Frame = 1


Query: 43  RPYFRLPDSFRKTKEVGVFPSLQHSSVWSVISFAKVEFLEWYLAMVKCRPVLTKSITSAL 102
           RP++R P    K KE GV      SS  S  + +   F+ WYL MVK RPVLTKS+TS+L
Sbjct: 46  RPFYRTPQFLGKAKETGVSGFCSSSSS-SSSTVSTAGFIGWYLGMVKSRPVLTKSVTSSL 105

Query: 103 IYTAADLSSQTIALPSSEPYDLVRTLRMAGYGLLILGPSLHYWFNFMSRLFPKKDIFSTL 162
           IY AADLSSQTI   S + YDLVRT RM GYGLLILGP+LHYWFN MS LFPK+D+ +T 
Sbjct: 106 IYIAADLSSQTIPQASVDSYDLVRTARMGGYGLLILGPTLHYWFNLMSSLFPKRDLITTF 165

Query: 163 KKMALGQSLYGPSMTVIFFSMNAFLQG 190
           KKMA+GQ++YGP+M V+FFS+NA LQG
Sbjct: 166 KKMAMGQTVYGPAMNVVFFSLNAALQG 191

[Close]

BLAST of CmoCh04G004900.1 vs. TAIR10
Match: AT5G43140.1 (AT5G43140.1 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein)

HSP 1 Score: 125.6 bits (314), Expect = 3.6e-29
Identity = 55/110 (50.00%), Postives = 81/110 (73.64%), Query Frame = 1


Query: 80  FLEWYLAMVKCRPVLTKSITSALIYTAADLSSQTIALPSSEPYDLVRTLRMAGYGLLILG 139
           FL WYL  ++  P +TKSIT+++IY AADL+SQ I +  +  +DL+RT RMA +GL+ LG
Sbjct: 78  FLRWYLRKLESHPFMTKSITTSVIYMAADLTSQMITMEPTGSFDLIRTARMASFGLIFLG 137

Query: 140 PSLHYWFNFMSRLFPKKDIFSTLKKMALGQSLYGPSMTVIFFSMNAFLQG 190
           PS H WF+++S++ PK+D+ +T KK+ +GQ L+GP    +F+S NA LQG
Sbjct: 138 PSQHLWFSYLSKILPKRDVLTTFKKIMMGQVLFGPVSNTVFYSYNAALQG 187

[Close]

BLAST of CmoCh04G004900.1 vs. TAIR10
Match: AT5G19750.1 (AT5G19750.1 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein)

HSP 1 Score: 69.7 bits (169), Expect = 2.4e-12
Identity = 36/115 (31.30%), Postives = 62/115 (53.91%), Query Frame = 1


Query: 77  KVEFLEWYLAMVKCRPVLTKSITSALIYTAADLSSQTIALPSSEPYDLVRTLRMAGYGLL 136
           K   L WY A++   PVLTK++T+AL+    DL  Q + +  +   D  RTL     GL 
Sbjct: 111 KWSLLSWYQALLSNSPVLTKAVTAALLNLVGDLICQ-LTINKTSSLDKKRTLTFTFLGLG 170

Query: 137 ILGPSLHYWFNFMSRLFPKKDIFSTLKKMALGQSLYGPSMTVIFFSMNAFLQGTP 192
           ++GP+LH+W+ ++S++     +   + ++ L Q ++ P    +F S    L+G P
Sbjct: 171 LVGPTLHFWYLYLSKVVTASGLSGAVIRLLLDQFVFAPIFVGVFLSAVVTLEGKP 224

[Close]

BLAST of CmoCh04G004900.1 vs. TAIR10
Match: AT2G42770.1 (AT2G42770.1 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein)

HSP 1 Score: 53.9 bits (128), Expect = 1.3e-07
Identity = 22/63 (34.92%), Postives = 36/63 (57.14%), Query Frame = 1


Query: 122 YDLVRTLRMAGYGLLILGPSLHYWFNFMSRLFPKKDIFSTLKKMALGQSLYGPSMTVIFF 181
           +D +R LRM+ YG L+ GP  + W+ F+    PK    + + K+ L Q + GPS+  + F
Sbjct: 104 HDWIRALRMSSYGFLLYGPGSYAWYQFLDHSLPKPTATNLVLKVLLNQVILGPSVIAVIF 163

Query: 182 SMN 185
           + N
Sbjct: 164 AWN 166

[Close]

BLAST of CmoCh04G004900.1 vs. NCBI nr
Match: gi|659108774|ref|XP_008454382.1| (PREDICTED: PXMP2/4 family protein 4 [Cucumis melo])

HSP 1 Score: 308.9 bits (790), Expect = 6.5e-81
Identity = 154/190 (81.05%), Postives = 170/190 (89.47%), Query Frame = 1


Query: 1   MIGAFRRSSGLSGLLHFRRSSQLKGSKA-FEATAIVRKQSQPIRPYFRLPDSFRKTKEVG 60
           MIGA RRSSG+SGLLHFR  S LKGSKA FEATAIVRK +QPIRPYFRLPDSFRK KEVG
Sbjct: 35  MIGALRRSSGISGLLHFRHFSHLKGSKAAFEATAIVRKPNQPIRPYFRLPDSFRKAKEVG 94

Query: 61  VFPSLQHSSVWSVISFAKVEFLEWYLAMVKCRPVLTKSITSALIYTAADLSSQTIALPSS 120
           VFPS+QHSS  S  SF KVEFLEWYLAMVKCRPVLTKSITSA+IY+AADLSSQTI+L  S
Sbjct: 95  VFPSVQHSSASSFFSFVKVEFLEWYLAMVKCRPVLTKSITSAIIYSAADLSSQTISLSPS 154

Query: 121 EPYDLVRTLRMAGYGLLILGPSLHYWFNFMSRLFPKKDIFSTLKKMALGQSLYGPSMTVI 180
           E YDL+RT+RMAGYG+L+LGPSLHYWFN MS+LFPKKD+FST KKMA+GQ L+GP MT I
Sbjct: 155 ESYDLIRTVRMAGYGMLVLGPSLHYWFNLMSKLFPKKDLFSTFKKMAMGQGLFGPFMTAI 214

Query: 181 FFSMNAFLQG 190
           FFS+NAF+QG
Sbjct: 215 FFSLNAFVQG 224

[Close]

BLAST of CmoCh04G004900.1 vs. NCBI nr
Match: gi|700197620|gb|KGN52778.1| (hypothetical protein Csa_4G000970 [Cucumis sativus])

HSP 1 Score: 306.6 bits (784), Expect = 3.2e-80
Identity = 154/190 (81.05%), Postives = 169/190 (88.95%), Query Frame = 1


Query: 1   MIGAFRRSSGLSGLLHFRRSSQLKGSKA-FEATAIVRKQSQPIRPYFRLPDSFRKTKEVG 60
           MIGA RRSSG+SGLLHFR  S LKGSKA FEATAIVRKQ+QPIRPYFRLPDSFRK KEVG
Sbjct: 1   MIGALRRSSGISGLLHFRHFSHLKGSKAAFEATAIVRKQNQPIRPYFRLPDSFRKAKEVG 60

Query: 61  VFPSLQHSSVWSVISFAKVEFLEWYLAMVKCRPVLTKSITSALIYTAADLSSQTIALPSS 120
           VF S QHSS  S  S  KVEFLEWYLAM+KCRPVLTKSITSA+IYTAADLSSQTI+L SS
Sbjct: 61  VFSSGQHSSASSFFSIVKVEFLEWYLAMIKCRPVLTKSITSAIIYTAADLSSQTISLSSS 120

Query: 121 EPYDLVRTLRMAGYGLLILGPSLHYWFNFMSRLFPKKDIFSTLKKMALGQSLYGPSMTVI 180
           E YDL+RT+RMAGYG+L+LGPSLHYWFN MS+LFP+KD+FST KKMA+GQ L+GP MT I
Sbjct: 121 ESYDLIRTVRMAGYGMLVLGPSLHYWFNLMSKLFPQKDLFSTFKKMAMGQGLFGPFMTAI 180

Query: 181 FFSMNAFLQG 190
           FFS+NAFLQG
Sbjct: 181 FFSLNAFLQG 190

[Close]

BLAST of CmoCh04G004900.1 vs. NCBI nr
Match: gi|778689211|ref|XP_004152269.2| (PREDICTED: PXMP2/4 family protein 4 [Cucumis sativus])

HSP 1 Score: 306.6 bits (784), Expect = 3.2e-80
Identity = 154/190 (81.05%), Postives = 169/190 (88.95%), Query Frame = 1


Query: 1   MIGAFRRSSGLSGLLHFRRSSQLKGSKA-FEATAIVRKQSQPIRPYFRLPDSFRKTKEVG 60
           MIGA RRSSG+SGLLHFR  S LKGSKA FEATAIVRKQ+QPIRPYFRLPDSFRK KEVG
Sbjct: 35  MIGALRRSSGISGLLHFRHFSHLKGSKAAFEATAIVRKQNQPIRPYFRLPDSFRKAKEVG 94

Query: 61  VFPSLQHSSVWSVISFAKVEFLEWYLAMVKCRPVLTKSITSALIYTAADLSSQTIALPSS 120
           VF S QHSS  S  S  KVEFLEWYLAM+KCRPVLTKSITSA+IYTAADLSSQTI+L SS
Sbjct: 95  VFSSGQHSSASSFFSIVKVEFLEWYLAMIKCRPVLTKSITSAIIYTAADLSSQTISLSSS 154

Query: 121 EPYDLVRTLRMAGYGLLILGPSLHYWFNFMSRLFPKKDIFSTLKKMALGQSLYGPSMTVI 180
           E YDL+RT+RMAGYG+L+LGPSLHYWFN MS+LFP+KD+FST KKMA+GQ L+GP MT I
Sbjct: 155 ESYDLIRTVRMAGYGMLVLGPSLHYWFNLMSKLFPQKDLFSTFKKMAMGQGLFGPFMTAI 214

Query: 181 FFSMNAFLQG 190
           FFS+NAFLQG
Sbjct: 215 FFSLNAFLQG 224

[Close]

BLAST of CmoCh04G004900.1 vs. NCBI nr
Match: gi|703108635|ref|XP_010099084.1| (PXMP2/4 family protein 4 [Morus notabilis])

HSP 1 Score: 198.4 bits (503), Expect = 1.2e-47
Identity = 114/199 (57.29%), Postives = 134/199 (67.34%), Query Frame = 1


Query: 1   MIGAFRRSSGLSGLLHFRRSS--QLKGSKAFEATAIVRKQSQPIRPYFRLPDSFRKTKEV 60
           M GAF RS   +    FRR S   + G       + V  Q+ P R Y R P   RK ++ 
Sbjct: 1   MNGAFLRSGTGTVPRLFRRYSLTDVLGESGGALASFVCSQT-PSRAYLRFPHFMRKARDC 60

Query: 61  GVFPSLQHSSVWSVISFA--------KVEFLEWYLAMVKCRPVLTKSITSALIYTAADLS 120
              PSL  S+  S  S +        +V  + WYL MVKCRP+LTKS+TSALIYTAADLS
Sbjct: 61  DFSPSLLSSAFSSSSSSSTAAAAKAKEVGIIGWYLGMVKCRPILTKSVTSALIYTAADLS 120

Query: 121 SQTIALPSSEPYDLVRTLRMAGYGLLILGPSLHYWFNFMSRLFPKKDIFSTLKKMALGQS 180
           SQ I   SSE YD VRTLRMAGYGLL+LGPSLHYWFNFMSRLFP++D+ STLKKMA+GQ 
Sbjct: 121 SQIIPQQSSESYDFVRTLRMAGYGLLVLGPSLHYWFNFMSRLFPRRDLLSTLKKMAMGQG 180

Query: 181 LYGPSMTVIFFSMNAFLQG 190
           +YGP+MTVIFFS+NA LQG
Sbjct: 181 IYGPAMTVIFFSINARLQG 198

[Close]

BLAST of CmoCh04G004900.1 vs. NCBI nr
Match: gi|922407379|ref|XP_013469994.1| (peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein [Medicago truncatula])

HSP 1 Score: 198.0 bits (502), Expect = 1.6e-47
Identity = 99/152 (65.13%), Postives = 123/152 (80.92%), Query Frame = 1


Query: 43  RPYFRLPDSF--RKTKEVGVFPSL---QHSSVWSVISFAKVEFLEWYLAMVKCRPVLTKS 102
           +PYFRLP++F  +KT++  + PS      SS  S  S  KV F+ WYL M+K RP+LTKS
Sbjct: 39  KPYFRLPNNFFTKKTRQCEISPSSFSSSSSSSSSTASIPKVGFVGWYLGMIKSRPILTKS 98

Query: 103 ITSALIYTAADLSSQTIALPSSEPYDLVRTLRMAGYGLLILGPSLHYWFNFMSRLFPKKD 162
           +TSALIYTAADLSSQTI   SS+ +D +RTLRMAGYG++ILGPSLH+WFNF+S+LFP +D
Sbjct: 99  VTSALIYTAADLSSQTIERQSSKSFDFIRTLRMAGYGMIILGPSLHFWFNFVSKLFPGRD 158

Query: 163 IFSTLKKMALGQSLYGPSMTVIFFSMNAFLQG 190
           IFSTLKKMA+GQ +YGP+MTVIFFS+NA LQG
Sbjct: 159 IFSTLKKMAMGQGIYGPAMTVIFFSLNAGLQG 190

The following BLAST results are available for this feature:

BLAST of CmoCh04G004900.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PX24D_DICDI	2.9e-12	35.19	PXMP2/4 family protein 4 OS=Dictyostelium discoideum GN=DDB_G0290631 PE=3 SV=1	[more]
SYM1_NEUCR	6.0e-10	31.86	Protein sym-1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 ...	[more]
SYM1_GIBZE	7.9e-10	32.74	Protein SYM1 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL ...	[more]
SYM1_ASPOR	7.9e-10	34.55	Protein sym1 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=sym1 PE=3 SV=...	[more]
PXMP2_MOUSE	2.5e-08	28.24	Peroxisomal membrane protein 2 OS=Mus musculus GN=Pxmp2 PE=1 SV=2	[more]

BLAST of CmoCh04G004900.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KT72_CUCSA	2.3e-80	81.05	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G000970 PE=3 SV=1	[more]
W9RXU9_9ROSA	8.7e-48	57.29	PXMP2/4 family protein 4 OS=Morus notabilis GN=L484_011519 PE=3 SV=1	[more]
A0A072VQF9_MEDTR	1.1e-47	65.13	Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein OS=Medicago truncatula ...	[more]
R0I7M1_9BRAS	1.5e-47	61.18	Uncharacterized protein OS=Capsella rubella GN=CARUB_v10015735mg PE=3 SV=1	[more]
M5VMX2_PRUPE	1.5e-47	54.08	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010201mg PE=3 SV=1	[more]

BLAST of CmoCh04G004900.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G14860.1	7.7e-48	64.63	Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein	[more]
AT4G33905.1	1.6e-45	61.90	Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein	[more]
AT5G43140.1	3.6e-29	50.00	Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein	[more]
AT5G19750.1	2.4e-12	31.30	Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein	[more]
AT2G42770.1	1.3e-07	34.92	Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein	[more]

BLAST of CmoCh04G004900.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659108774\|ref\|XP_008454382.1\|	6.5e-81	81.05	PREDICTED: PXMP2/4 family protein 4 [Cucumis melo]	[more]
gi\|700197620\|gb\|KGN52778.1\|	3.2e-80	81.05	hypothetical protein Csa_4G000970 [Cucumis sativus]	[more]
gi\|778689211\|ref\|XP_004152269.2\|	3.2e-80	81.05	PREDICTED: PXMP2/4 family protein 4 [Cucumis sativus]	[more]
gi\|703108635\|ref\|XP_010099084.1\|	1.2e-47	57.29	PXMP2/4 family protein 4 [Morus notabilis]	[more]
gi\|922407379\|ref\|XP_013469994.1\|	1.6e-47	65.13	peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein [Medicago truncatula]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR007248	Mpv17_PMP22

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh04G004900	CmoCh04G004900	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh04G004900.1	CmoCh04G004900.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh04G004900.1.CDS.2	CmoCh04G004900.1.CDS.2	CDS
CmoCh04G004900.1.CDS.1	CmoCh04G004900.1.CDS.1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh04G004900.1.five_prime_UTR.1	CmoCh04G004900.1.five_prime_UTR.1	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh04G004900.1.exon.2	CmoCh04G004900.1.exon.2	exon
CmoCh04G004900.1.exon.1	CmoCh04G004900.1.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007248	Mpv17/PMP22	PANTHER	PTHR11266	PEROXISOMAL MEMBRANE PROTEIN 2, PXMP2 MPV17	coord: 36..189 score: 4.1
None	No IPR available	PANTHER	PTHR11266:SF18	22 KDA PEROXISOMAL MEMBRANE PROTEIN	coord: 36..189 score: 4.1