CmoCh04G004900 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh04G004900
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionPeroxisomal membrane 22 kDa (Mpv17/PMP22) family protein
LocationCmo_Chr04 : 2443462 .. 2444508 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GCAAATTTTGCAAAATTTTCTCTGTTTCGTCTTTCGTCTCGCTTCAAACTTCAAAACCCTTTTCTCATTTTCAACCCTAAACCCTAAAAGGATGATCGGCGCTTTCCGGAGGAGCTCCGGGCTGTCTGGATTGTTGCATTTTCGCCGTTCTTCTCAGTTGAAAGGTTCTAAGGCTTTTGAAGCTACTGCGATCGTGAGGAAGCAATCTCAGCCCATTCGGCCGTATTTCCGTTTGCCGGATTCTTTCAGGAAGACGAAGGAGGTTGGTGTTTTTCCATCGTTGCAGCACTCGTCTGTGTGGTCGGTTATTTCGTTTGCGAAGGTTGAGTTTCTCGAATGGTATTTGGCTATGGTGAAATGTCGCCCTGTTCTTACGAAGAGTATCACTTCTGCGCTTATTTACACGGCTGCTGATTTGTCGTCTCAGGTGAATTGTTTTGGAGCTTGCATCTACTCATGATGTGTTTGATGATTTGAAACCTCTGTTTTTAGGTTTTTTTTTTTATAGTCATTTTCTCTGTTCTTTGATTGCTCTTCATAGAATAATTTTCTTCTCGATCAAGGCTTTTGAACATCTGCATTCGTTAGAGATCGCCACTTCGAATGCTCTGGTTTGGGAATCAAATATACTTTGATGAGTCCTTTTCTCTGTTTTTAACTGTTCATCGTGCAACTTATTGTTCTCGTCTACTACTATTAATCCGTTGCTCTCATTGGAGATTGTAATTGTAAATGCTGCTCTGATTTTGGAATCAAATGTTCTTTCAGACCATTGCTCTGCCATCTTCAGAGCCATATGATTTAGTTCGAACACTACGTATGGCTGGATATGGCCTGCTGATTCTAGGGCCATCTCTCCATTACTGGTTTAACTTCATGTCAAGACTCTTCCCCAAGAAGGACATCTTCTCCACCTTGAAGAAAATGGCCTTGGGCCAGAGCCTCTATGGCCCTTCCATGACAGTCATTTTCTTCTCCATGAATGCATTTCTCCAAGGTACGCCATTTTCCACAACCTGCTTCATTTCTCAACCTTTAGATTACTAA

mRNA sequence

GCAAATTTTGCAAAATTTTCTCTGTTTCGTCTTTCGTCTCGCTTCAAACTTCAAAACCCTTTTCTCATTTTCAACCCTAAACCCTAAAAGGATGATCGGCGCTTTCCGGAGGAGCTCCGGGCTGTCTGGATTGTTGCATTTTCGCCGTTCTTCTCAGTTGAAAGGTTCTAAGGCTTTTGAAGCTACTGCGATCGTGAGGAAGCAATCTCAGCCCATTCGGCCGTATTTCCGTTTGCCGGATTCTTTCAGGAAGACGAAGGAGGTTGGTGTTTTTCCATCGTTGCAGCACTCGTCTGTGTGGTCGGTTATTTCGTTTGCGAAGGTTGAGTTTCTCGAATGGTATTTGGCTATGGTGAAATGTCGCCCTGTTCTTACGAAGAGTATCACTTCTGCGCTTATTTACACGGCTGCTGATTTGTCGTCTCAGACCATTGCTCTGCCATCTTCAGAGCCATATGATTTAGTTCGAACACTACGTATGGCTGGATATGGCCTGCTGATTCTAGGGCCATCTCTCCATTACTGGTTTAACTTCATGTCAAGACTCTTCCCCAAGAAGGACATCTTCTCCACCTTGAAGAAAATGGCCTTGGGCCAGAGCCTCTATGGCCCTTCCATGACAGTCATTTTCTTCTCCATGAATGCATTTCTCCAAGGTACGCCATTTTCCACAACCTGCTTCATTTCTCAACCTTTAGATTACTAA

Coding sequence (CDS)

ATGATCGGCGCTTTCCGGAGGAGCTCCGGGCTGTCTGGATTGTTGCATTTTCGCCGTTCTTCTCAGTTGAAAGGTTCTAAGGCTTTTGAAGCTACTGCGATCGTGAGGAAGCAATCTCAGCCCATTCGGCCGTATTTCCGTTTGCCGGATTCTTTCAGGAAGACGAAGGAGGTTGGTGTTTTTCCATCGTTGCAGCACTCGTCTGTGTGGTCGGTTATTTCGTTTGCGAAGGTTGAGTTTCTCGAATGGTATTTGGCTATGGTGAAATGTCGCCCTGTTCTTACGAAGAGTATCACTTCTGCGCTTATTTACACGGCTGCTGATTTGTCGTCTCAGACCATTGCTCTGCCATCTTCAGAGCCATATGATTTAGTTCGAACACTACGTATGGCTGGATATGGCCTGCTGATTCTAGGGCCATCTCTCCATTACTGGTTTAACTTCATGTCAAGACTCTTCCCCAAGAAGGACATCTTCTCCACCTTGAAGAAAATGGCCTTGGGCCAGAGCCTCTATGGCCCTTCCATGACAGTCATTTTCTTCTCCATGAATGCATTTCTCCAAGGTACGCCATTTTCCACAACCTGCTTCATTTCTCAACCTTTAGATTACTAA
Homology
[Close]
BLAST of CmoCh04G004900 vs. Swiss-Prot
Match: PX24D_DICDI (PXMP2/4 family protein 4 OS=Dictyostelium discoideum GN=DDB_G0290631 PE=3 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.9e-12
Identity = 38/108 (35.19%), Postives = 57/108 (52.78%), Query Frame = 1 

Query: 84  YLAMVKCRPVLTKSITSALIYTAADLSSQTIAL--PSSEPYDLVRTLRMAGYGLLILGPS 143
           YL+ +   PV TK++TS  +Y  +D   Q I L     + YD  R++RMA +G  + GP 
Sbjct: 15  YLSQLHKYPVATKAVTSGFLYLISDSLVQGIELSRDKDKKYDFKRSMRMAVFGFAVTGPL 74

Query: 144 LHYWFNFMSRLFPKKDIFSTLKKMALGQSLYGPSMTVIFFSMNAFLQG 190
            HYWF ++ + FPKK       K+ + Q +  P    +FFS    L+G
Sbjct: 75  FHYWFKYLDKHFPKKSYRHAFIKLTIDQVVCSPVFNFLFFSGMGILEG 122

[Close]
BLAST of CmoCh04G004900 vs. Swiss-Prot
Match: SYM1_NEUCR (Protein sym-1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=sym-1 PE=3 SV=2)

HSP 1 Score: 65.9 bits (159), Expect = 6.0e-10
Identity = 36/113 (31.86%), Postives = 62/113 (54.87%), Query Frame = 1 

Query: 81  LEWYLAMVKCRPVLTKSITSALIYTAADLSSQTIA-LPSSEPYDLVRTLRMAGYGLLILG 140
           L WY A +  RP+LT+++T+++++   D+++Q +        +DL RT RM  YG  + G
Sbjct: 2   LSWYKAQLAARPLLTQAVTTSILFGVGDVAAQQLVDRRGLSNHDLTRTGRMVLYGGAVFG 61

Query: 141 PSLHYWFNFMSR--LFPKKDIFSTLKKMALGQSLYGPSMTVIFFSMNAFLQGT 191
           P+   WF F+ +  + P     + L ++A  Q L+ P+   IF    A L+GT
Sbjct: 62  PAATTWFRFLQKRVVVPGSTNKTILARVAADQGLFAPTFIGIFLGSMAVLEGT 114

[Close]
BLAST of CmoCh04G004900 vs. Swiss-Prot
Match: SYM1_GIBZE (Protein SYM1 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=SYM1 PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 7.9e-10
Identity = 37/113 (32.74%), Postives = 64/113 (56.64%), Query Frame = 1 

Query: 80  FLEWYLAMVKCRPVLTKSITSALIYTAADLSSQTIALP-SSEPYDLVRTLRMAGYGLLIL 139
           F+ WY + +  RP+LT+S+T+A ++   D+++Q +     ++ +DLVRT RMA YG  + 
Sbjct: 4   FIRWYNSRLAARPLLTQSVTTAFLFATGDVTAQQLVEKRGAQKHDLVRTGRMALYGGFVF 63

Query: 140 GPSLHYWFNFMSRLFPKKD--IFSTLKKMALGQSLYGPSMTVIFFSMNAFLQG 190
           GP    WF F++R    ++      L ++A  Q  + P M  +F S  A ++G
Sbjct: 64  GPVATTWFAFLARRVNVRNNKKAEVLARVACDQLGFAPVMIGVFLSSMATMEG 116

[Close]
BLAST of CmoCh04G004900 vs. Swiss-Prot
Match: SYM1_ASPOR (Protein sym1 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=sym1 PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 7.9e-10
Identity = 38/110 (34.55%), Postives = 62/110 (56.36%), Query Frame = 1 

Query: 83  WYLAMVKCRPVLTKSITSALIYTAAD-LSSQTIALPSSEPYDLVRTLRMAGYGLLILGPS 142
           WY A +  +P+LT S+TSA+++ + D L+ Q +     E +D  RT RMA YG  I GP+
Sbjct: 4   WYQAKLAKQPILTASVTSAVLFGSGDVLAQQVVDRKGLEKHDFARTGRMALYGGAIFGPA 63

Query: 143 LHYWFNFMSRLFPKKDIFSTL-KKMALGQSLYGPSMTVIFFSMNAFLQGT 191
              WF F+ R    K+  +T+  ++A  Q L+ P+    F +  A ++G+
Sbjct: 64  ATTWFGFLQRNVVLKNSKATIVARVAADQCLFTPTHLTCFLTSMAIMEGS 113

[Close]
BLAST of CmoCh04G004900 vs. Swiss-Prot
Match: PXMP2_MOUSE (Peroxisomal membrane protein 2 OS=Mus musculus GN=Pxmp2 PE=1 SV=2)

HSP 1 Score: 60.5 bits (145), Expect = 2.5e-08
Identity = 37/131 (28.24%), Postives = 66/131 (50.38%), Query Frame = 1 

Query: 62  PSLQHSSVWSVISFAKVEFLEWYLAMVKCRPVLTKSITSALIYTAADLSSQTIALPSSEP 121
           P+     V S +       L  YL ++K  PVLTK+++S ++    +L +QTI     + 
Sbjct: 3   PAASRLRVESELGSLPKRALAQYLLLLKLYPVLTKAVSSGILSALGNLLAQTIEKKQRKD 62

Query: 122 YDLVRT---LRMAGYGLLILGPSLHYWFNFMSRLFPKKDIFSTLKKMALGQSLYGPSMTV 181
             L+     LR   YGL + GP  HY + FM    P +  ++++K++ L +  + P+  +
Sbjct: 63  SRLLEVSGLLRYLVYGLFVTGPLSHYLYLFMEYSVPPEVPWASVKRLLLDRLFFAPTFLL 122

Query: 182 IFFSMNAFLQG 190
           +FF +   L+G
Sbjct: 123 LFFFVMNLLEG 133

[Close]
BLAST of CmoCh04G004900 vs. TrEMBL
Match: A0A0A0KT72_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G000970 PE=3 SV=1)

HSP 1 Score: 306.6 bits (784), Expect = 2.3e-80
Identity = 154/190 (81.05%), Postives = 169/190 (88.95%), Query Frame = 1 

Query: 1   MIGAFRRSSGLSGLLHFRRSSQLKGSKA-FEATAIVRKQSQPIRPYFRLPDSFRKTKEVG 60
           MIGA RRSSG+SGLLHFR  S LKGSKA FEATAIVRKQ+QPIRPYFRLPDSFRK KEVG
Sbjct: 1   MIGALRRSSGISGLLHFRHFSHLKGSKAAFEATAIVRKQNQPIRPYFRLPDSFRKAKEVG 60

Query: 61  VFPSLQHSSVWSVISFAKVEFLEWYLAMVKCRPVLTKSITSALIYTAADLSSQTIALPSS 120
           VF S QHSS  S  S  KVEFLEWYLAM+KCRPVLTKSITSA+IYTAADLSSQTI+L SS
Sbjct: 61  VFSSGQHSSASSFFSIVKVEFLEWYLAMIKCRPVLTKSITSAIIYTAADLSSQTISLSSS 120

Query: 121 EPYDLVRTLRMAGYGLLILGPSLHYWFNFMSRLFPKKDIFSTLKKMALGQSLYGPSMTVI 180
           E YDL+RT+RMAGYG+L+LGPSLHYWFN MS+LFP+KD+FST KKMA+GQ L+GP MT I
Sbjct: 121 ESYDLIRTVRMAGYGMLVLGPSLHYWFNLMSKLFPQKDLFSTFKKMAMGQGLFGPFMTAI 180

Query: 181 FFSMNAFLQG 190
           FFS+NAFLQG
Sbjct: 181 FFSLNAFLQG 190

[Close]
BLAST of CmoCh04G004900 vs. TrEMBL
Match: W9RXU9_9ROSA (PXMP2/4 family protein 4 OS=Morus notabilis GN=L484_011519 PE=3 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 8.7e-48
Identity = 114/199 (57.29%), Postives = 134/199 (67.34%), Query Frame = 1 

Query: 1   MIGAFRRSSGLSGLLHFRRSS--QLKGSKAFEATAIVRKQSQPIRPYFRLPDSFRKTKEV 60
           M GAF RS   +    FRR S   + G       + V  Q+ P R Y R P   RK ++ 
Sbjct: 1   MNGAFLRSGTGTVPRLFRRYSLTDVLGESGGALASFVCSQT-PSRAYLRFPHFMRKARDC 60

Query: 61  GVFPSLQHSSVWSVISFA--------KVEFLEWYLAMVKCRPVLTKSITSALIYTAADLS 120
              PSL  S+  S  S +        +V  + WYL MVKCRP+LTKS+TSALIYTAADLS
Sbjct: 61  DFSPSLLSSAFSSSSSSSTAAAAKAKEVGIIGWYLGMVKCRPILTKSVTSALIYTAADLS 120

Query: 121 SQTIALPSSEPYDLVRTLRMAGYGLLILGPSLHYWFNFMSRLFPKKDIFSTLKKMALGQS 180
           SQ I   SSE YD VRTLRMAGYGLL+LGPSLHYWFNFMSRLFP++D+ STLKKMA+GQ 
Sbjct: 121 SQIIPQQSSESYDFVRTLRMAGYGLLVLGPSLHYWFNFMSRLFPRRDLLSTLKKMAMGQG 180

Query: 181 LYGPSMTVIFFSMNAFLQG 190
           +YGP+MTVIFFS+NA LQG
Sbjct: 181 IYGPAMTVIFFSINARLQG 198

[Close]
BLAST of CmoCh04G004900 vs. TrEMBL
Match: A0A072VQF9_MEDTR (Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein OS=Medicago truncatula GN=MTR_1g106775 PE=3 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 1.1e-47
Identity = 99/152 (65.13%), Postives = 123/152 (80.92%), Query Frame = 1 

Query: 43  RPYFRLPDSF--RKTKEVGVFPSL---QHSSVWSVISFAKVEFLEWYLAMVKCRPVLTKS 102
           +PYFRLP++F  +KT++  + PS      SS  S  S  KV F+ WYL M+K RP+LTKS
Sbjct: 39  KPYFRLPNNFFTKKTRQCEISPSSFSSSSSSSSSTASIPKVGFVGWYLGMIKSRPILTKS 98

Query: 103 ITSALIYTAADLSSQTIALPSSEPYDLVRTLRMAGYGLLILGPSLHYWFNFMSRLFPKKD 162
           +TSALIYTAADLSSQTI   SS+ +D +RTLRMAGYG++ILGPSLH+WFNF+S+LFP +D
Sbjct: 99  VTSALIYTAADLSSQTIERQSSKSFDFIRTLRMAGYGMIILGPSLHFWFNFVSKLFPGRD 158

Query: 163 IFSTLKKMALGQSLYGPSMTVIFFSMNAFLQG 190
           IFSTLKKMA+GQ +YGP+MTVIFFS+NA LQG
Sbjct: 159 IFSTLKKMAMGQGIYGPAMTVIFFSLNAGLQG 190

[Close]
BLAST of CmoCh04G004900 vs. TrEMBL
Match: R0I7M1_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10015735mg PE=3 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 1.5e-47
Identity = 104/170 (61.18%), Postives = 122/170 (71.76%), Query Frame = 1 

Query: 23  LKGSKAFEATAIVRKQSQPIRPYFRLPDSFRKTKEVGVFPSLQH---SSVWSVISFAKVE 82
           ++ +KA E     +      RPYFR      + KE G  PS      SS  S  S +KV 
Sbjct: 17  IRRNKAAETYPFAKTGLSQSRPYFRSRQLLGRAKETGASPSPSLGFCSSSSSSASISKVG 76

Query: 83  FLEWYLAMVKCRPVLTKSITSALIYTAADLSSQTIALPSSEPYDLVRTLRMAGYGLLILG 142
           F+ WYL MVK RPVLTKS+TS+LIY AADLSSQTIA  SSE YDLVRT RM GYGL +LG
Sbjct: 77  FIGWYLGMVKSRPVLTKSLTSSLIYIAADLSSQTIAKSSSESYDLVRTARMGGYGLFVLG 136

Query: 143 PSLHYWFNFMSRLFPKKDIFSTLKKMALGQSLYGPSMTVIFFSMNAFLQG 190
           P+LHYWFNFMSRLFPKKD+ +T KKMA+GQ++YGP+MTVIFFS+NA LQG
Sbjct: 137 PTLHYWFNFMSRLFPKKDLITTFKKMAMGQTIYGPTMTVIFFSLNASLQG 186

[Close]
BLAST of CmoCh04G004900 vs. TrEMBL
Match: M5VMX2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010201mg PE=3 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 1.5e-47
Identity = 106/196 (54.08%), Postives = 143/196 (72.96%), Query Frame = 1 

Query: 1   MIGAFRRSSGLSGLLHFRRSSQLKGSKAFEATAIVRKQSQPIRPYFRLPDSFRKTKEVGV 60
           M   FRR++ ++ LLH    +   G++      +++ Q+Q  + Y R P  FRK ++  +
Sbjct: 1   MTAVFRRNTNITRLLHKHSITDPIGART-----LLQSQTQS-KAYLRFPQVFRKARDYDL 60

Query: 61  FPSLQHSSVWS------VISFAKVEFLEWYLAMVKCRPVLTKSITSALIYTAADLSSQTI 120
            PS+  S+  S        S +K+ F+ WYL M++ RP+LTKS+T+ALIYTAADLSSQT+
Sbjct: 61  SPSVFSSAFSSSKSSAETTSVSKLGFVGWYLGMLQHRPILTKSVTAALIYTAADLSSQTL 120

Query: 121 ALPS-SEPYDLVRTLRMAGYGLLILGPSLHYWFNFMSRLFPKKDIFSTLKKMALGQSLYG 180
           A  S SE YD VRTLRMAGYG+L+LGPS+H+WFNFMSR+FPK+DIFSTLKKMA+GQ+LYG
Sbjct: 121 AKSSFSESYDAVRTLRMAGYGMLVLGPSMHFWFNFMSRVFPKRDIFSTLKKMAMGQTLYG 180

Query: 181 PSMTVIFFSMNAFLQG 190
           P+MTV+FFS+NA LQG
Sbjct: 181 PAMTVVFFSLNACLQG 190

[Close]
BLAST of CmoCh04G004900 vs. TAIR10
Match: AT2G14860.1 (AT2G14860.1 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein)

HSP 1 Score: 187.6 bits (475), Expect = 7.7e-48
Identity = 95/147 (64.63%), Postives = 112/147 (76.19%), Query Frame = 1 

Query: 43  RPYFRLPDSFRKTKEVGVFPSLQHSSVWSVISFAKVEFLEWYLAMVKCRPVLTKSITSAL 102
           RPYFR      + KE GV PS       S  S +++ F+ WYL MVK  PV+TKS+TS+L
Sbjct: 37  RPYFRSRQLLERAKETGVSPS-PSLGFSSSSSPSRIGFVGWYLGMVKSHPVVTKSVTSSL 96

Query: 103 IYTAADLSSQTIALPSSEPYDLVRTLRMAGYGLLILGPSLHYWFNFMSRLFPKKDIFSTL 162
           IY AADLSSQTIA  SSE YDLVRT RM GYGL +LGP+LHYWFNFMSRLFPK+D+ +T 
Sbjct: 97  IYIAADLSSQTIAKTSSESYDLVRTARMGGYGLFVLGPTLHYWFNFMSRLFPKQDLITTF 156

Query: 163 KKMALGQSLYGPSMTVIFFSMNAFLQG 190
           KKMA+GQ++YGP MTVIFFS+NA LQG
Sbjct: 157 KKMAMGQTIYGPIMTVIFFSLNASLQG 182

[Close]
BLAST of CmoCh04G004900 vs. TAIR10
Match: AT4G33905.1 (AT4G33905.1 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein)

HSP 1 Score: 179.9 bits (455), Expect = 1.6e-45
Identity = 91/147 (61.90%), Postives = 109/147 (74.15%), Query Frame = 1 

Query: 43  RPYFRLPDSFRKTKEVGVFPSLQHSSVWSVISFAKVEFLEWYLAMVKCRPVLTKSITSAL 102
           RP++R P    K KE GV      SS  S  + +   F+ WYL MVK RPVLTKS+TS+L
Sbjct: 46  RPFYRTPQFLGKAKETGVSGFCSSSSS-SSSTVSTAGFIGWYLGMVKSRPVLTKSVTSSL 105

Query: 103 IYTAADLSSQTIALPSSEPYDLVRTLRMAGYGLLILGPSLHYWFNFMSRLFPKKDIFSTL 162
           IY AADLSSQTI   S + YDLVRT RM GYGLLILGP+LHYWFN MS LFPK+D+ +T 
Sbjct: 106 IYIAADLSSQTIPQASVDSYDLVRTARMGGYGLLILGPTLHYWFNLMSSLFPKRDLITTF 165

Query: 163 KKMALGQSLYGPSMTVIFFSMNAFLQG 190
           KKMA+GQ++YGP+M V+FFS+NA LQG
Sbjct: 166 KKMAMGQTVYGPAMNVVFFSLNAALQG 191

[Close]
BLAST of CmoCh04G004900 vs. TAIR10
Match: AT5G43140.1 (AT5G43140.1 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein)

HSP 1 Score: 125.6 bits (314), Expect = 3.6e-29
Identity = 55/110 (50.00%), Postives = 81/110 (73.64%), Query Frame = 1 

Query: 80  FLEWYLAMVKCRPVLTKSITSALIYTAADLSSQTIALPSSEPYDLVRTLRMAGYGLLILG 139
           FL WYL  ++  P +TKSIT+++IY AADL+SQ I +  +  +DL+RT RMA +GL+ LG
Sbjct: 78  FLRWYLRKLESHPFMTKSITTSVIYMAADLTSQMITMEPTGSFDLIRTARMASFGLIFLG 137

Query: 140 PSLHYWFNFMSRLFPKKDIFSTLKKMALGQSLYGPSMTVIFFSMNAFLQG 190
           PS H WF+++S++ PK+D+ +T KK+ +GQ L+GP    +F+S NA LQG
Sbjct: 138 PSQHLWFSYLSKILPKRDVLTTFKKIMMGQVLFGPVSNTVFYSYNAALQG 187

[Close]
BLAST of CmoCh04G004900 vs. TAIR10
Match: AT5G19750.1 (AT5G19750.1 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein)

HSP 1 Score: 69.7 bits (169), Expect = 2.4e-12
Identity = 36/115 (31.30%), Postives = 62/115 (53.91%), Query Frame = 1 

Query: 77  KVEFLEWYLAMVKCRPVLTKSITSALIYTAADLSSQTIALPSSEPYDLVRTLRMAGYGLL 136
           K   L WY A++   PVLTK++T+AL+    DL  Q + +  +   D  RTL     GL 
Sbjct: 111 KWSLLSWYQALLSNSPVLTKAVTAALLNLVGDLICQ-LTINKTSSLDKKRTLTFTFLGLG 170

Query: 137 ILGPSLHYWFNFMSRLFPKKDIFSTLKKMALGQSLYGPSMTVIFFSMNAFLQGTP 192
           ++GP+LH+W+ ++S++     +   + ++ L Q ++ P    +F S    L+G P
Sbjct: 171 LVGPTLHFWYLYLSKVVTASGLSGAVIRLLLDQFVFAPIFVGVFLSAVVTLEGKP 224

[Close]
BLAST of CmoCh04G004900 vs. TAIR10
Match: AT2G42770.1 (AT2G42770.1 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein)

HSP 1 Score: 53.9 bits (128), Expect = 1.3e-07
Identity = 22/63 (34.92%), Postives = 36/63 (57.14%), Query Frame = 1 

Query: 122 YDLVRTLRMAGYGLLILGPSLHYWFNFMSRLFPKKDIFSTLKKMALGQSLYGPSMTVIFF 181
           +D +R LRM+ YG L+ GP  + W+ F+    PK    + + K+ L Q + GPS+  + F
Sbjct: 104 HDWIRALRMSSYGFLLYGPGSYAWYQFLDHSLPKPTATNLVLKVLLNQVILGPSVIAVIF 163

Query: 182 SMN 185
           + N
Sbjct: 164 AWN 166

[Close]
BLAST of CmoCh04G004900 vs. NCBI nr
Match: gi|659108774|ref|XP_008454382.1| (PREDICTED: PXMP2/4 family protein 4 [Cucumis melo])

HSP 1 Score: 308.9 bits (790), Expect = 6.5e-81
Identity = 154/190 (81.05%), Postives = 170/190 (89.47%), Query Frame = 1 

Query: 1   MIGAFRRSSGLSGLLHFRRSSQLKGSKA-FEATAIVRKQSQPIRPYFRLPDSFRKTKEVG 60
           MIGA RRSSG+SGLLHFR  S LKGSKA FEATAIVRK +QPIRPYFRLPDSFRK KEVG
Sbjct: 35  MIGALRRSSGISGLLHFRHFSHLKGSKAAFEATAIVRKPNQPIRPYFRLPDSFRKAKEVG 94

Query: 61  VFPSLQHSSVWSVISFAKVEFLEWYLAMVKCRPVLTKSITSALIYTAADLSSQTIALPSS 120
           VFPS+QHSS  S  SF KVEFLEWYLAMVKCRPVLTKSITSA+IY+AADLSSQTI+L  S
Sbjct: 95  VFPSVQHSSASSFFSFVKVEFLEWYLAMVKCRPVLTKSITSAIIYSAADLSSQTISLSPS 154

Query: 121 EPYDLVRTLRMAGYGLLILGPSLHYWFNFMSRLFPKKDIFSTLKKMALGQSLYGPSMTVI 180
           E YDL+RT+RMAGYG+L+LGPSLHYWFN MS+LFPKKD+FST KKMA+GQ L+GP MT I
Sbjct: 155 ESYDLIRTVRMAGYGMLVLGPSLHYWFNLMSKLFPKKDLFSTFKKMAMGQGLFGPFMTAI 214

Query: 181 FFSMNAFLQG 190
           FFS+NAF+QG
Sbjct: 215 FFSLNAFVQG 224

[Close]
BLAST of CmoCh04G004900 vs. NCBI nr
Match: gi|700197620|gb|KGN52778.1| (hypothetical protein Csa_4G000970 [Cucumis sativus])

HSP 1 Score: 306.6 bits (784), Expect = 3.2e-80
Identity = 154/190 (81.05%), Postives = 169/190 (88.95%), Query Frame = 1 

Query: 1   MIGAFRRSSGLSGLLHFRRSSQLKGSKA-FEATAIVRKQSQPIRPYFRLPDSFRKTKEVG 60
           MIGA RRSSG+SGLLHFR  S LKGSKA FEATAIVRKQ+QPIRPYFRLPDSFRK KEVG
Sbjct: 1   MIGALRRSSGISGLLHFRHFSHLKGSKAAFEATAIVRKQNQPIRPYFRLPDSFRKAKEVG 60

Query: 61  VFPSLQHSSVWSVISFAKVEFLEWYLAMVKCRPVLTKSITSALIYTAADLSSQTIALPSS 120
           VF S QHSS  S  S  KVEFLEWYLAM+KCRPVLTKSITSA+IYTAADLSSQTI+L SS
Sbjct: 61  VFSSGQHSSASSFFSIVKVEFLEWYLAMIKCRPVLTKSITSAIIYTAADLSSQTISLSSS 120

Query: 121 EPYDLVRTLRMAGYGLLILGPSLHYWFNFMSRLFPKKDIFSTLKKMALGQSLYGPSMTVI 180
           E YDL+RT+RMAGYG+L+LGPSLHYWFN MS+LFP+KD+FST KKMA+GQ L+GP MT I
Sbjct: 121 ESYDLIRTVRMAGYGMLVLGPSLHYWFNLMSKLFPQKDLFSTFKKMAMGQGLFGPFMTAI 180

Query: 181 FFSMNAFLQG 190
           FFS+NAFLQG
Sbjct: 181 FFSLNAFLQG 190

[Close]
BLAST of CmoCh04G004900 vs. NCBI nr
Match: gi|778689211|ref|XP_004152269.2| (PREDICTED: PXMP2/4 family protein 4 [Cucumis sativus])

HSP 1 Score: 306.6 bits (784), Expect = 3.2e-80
Identity = 154/190 (81.05%), Postives = 169/190 (88.95%), Query Frame = 1 

Query: 1   MIGAFRRSSGLSGLLHFRRSSQLKGSKA-FEATAIVRKQSQPIRPYFRLPDSFRKTKEVG 60
           MIGA RRSSG+SGLLHFR  S LKGSKA FEATAIVRKQ+QPIRPYFRLPDSFRK KEVG
Sbjct: 35  MIGALRRSSGISGLLHFRHFSHLKGSKAAFEATAIVRKQNQPIRPYFRLPDSFRKAKEVG 94

Query: 61  VFPSLQHSSVWSVISFAKVEFLEWYLAMVKCRPVLTKSITSALIYTAADLSSQTIALPSS 120
           VF S QHSS  S  S  KVEFLEWYLAM+KCRPVLTKSITSA+IYTAADLSSQTI+L SS
Sbjct: 95  VFSSGQHSSASSFFSIVKVEFLEWYLAMIKCRPVLTKSITSAIIYTAADLSSQTISLSSS 154

Query: 121 EPYDLVRTLRMAGYGLLILGPSLHYWFNFMSRLFPKKDIFSTLKKMALGQSLYGPSMTVI 180
           E YDL+RT+RMAGYG+L+LGPSLHYWFN MS+LFP+KD+FST KKMA+GQ L+GP MT I
Sbjct: 155 ESYDLIRTVRMAGYGMLVLGPSLHYWFNLMSKLFPQKDLFSTFKKMAMGQGLFGPFMTAI 214

Query: 181 FFSMNAFLQG 190
           FFS+NAFLQG
Sbjct: 215 FFSLNAFLQG 224

[Close]
BLAST of CmoCh04G004900 vs. NCBI nr
Match: gi|703108635|ref|XP_010099084.1| (PXMP2/4 family protein 4 [Morus notabilis])

HSP 1 Score: 198.4 bits (503), Expect = 1.2e-47
Identity = 114/199 (57.29%), Postives = 134/199 (67.34%), Query Frame = 1 

Query: 1   MIGAFRRSSGLSGLLHFRRSS--QLKGSKAFEATAIVRKQSQPIRPYFRLPDSFRKTKEV 60
           M GAF RS   +    FRR S   + G       + V  Q+ P R Y R P   RK ++ 
Sbjct: 1   MNGAFLRSGTGTVPRLFRRYSLTDVLGESGGALASFVCSQT-PSRAYLRFPHFMRKARDC 60

Query: 61  GVFPSLQHSSVWSVISFA--------KVEFLEWYLAMVKCRPVLTKSITSALIYTAADLS 120
              PSL  S+  S  S +        +V  + WYL MVKCRP+LTKS+TSALIYTAADLS
Sbjct: 61  DFSPSLLSSAFSSSSSSSTAAAAKAKEVGIIGWYLGMVKCRPILTKSVTSALIYTAADLS 120

Query: 121 SQTIALPSSEPYDLVRTLRMAGYGLLILGPSLHYWFNFMSRLFPKKDIFSTLKKMALGQS 180
           SQ I   SSE YD VRTLRMAGYGLL+LGPSLHYWFNFMSRLFP++D+ STLKKMA+GQ 
Sbjct: 121 SQIIPQQSSESYDFVRTLRMAGYGLLVLGPSLHYWFNFMSRLFPRRDLLSTLKKMAMGQG 180

Query: 181 LYGPSMTVIFFSMNAFLQG 190
           +YGP+MTVIFFS+NA LQG
Sbjct: 181 IYGPAMTVIFFSINARLQG 198

[Close]
BLAST of CmoCh04G004900 vs. NCBI nr
Match: gi|922407379|ref|XP_013469994.1| (peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein [Medicago truncatula])

HSP 1 Score: 198.0 bits (502), Expect = 1.6e-47
Identity = 99/152 (65.13%), Postives = 123/152 (80.92%), Query Frame = 1 

Query: 43  RPYFRLPDSF--RKTKEVGVFPSL---QHSSVWSVISFAKVEFLEWYLAMVKCRPVLTKS 102
           +PYFRLP++F  +KT++  + PS      SS  S  S  KV F+ WYL M+K RP+LTKS
Sbjct: 39  KPYFRLPNNFFTKKTRQCEISPSSFSSSSSSSSSTASIPKVGFVGWYLGMIKSRPILTKS 98

Query: 103 ITSALIYTAADLSSQTIALPSSEPYDLVRTLRMAGYGLLILGPSLHYWFNFMSRLFPKKD 162
           +TSALIYTAADLSSQTI   SS+ +D +RTLRMAGYG++ILGPSLH+WFNF+S+LFP +D
Sbjct: 99  VTSALIYTAADLSSQTIERQSSKSFDFIRTLRMAGYGMIILGPSLHFWFNFVSKLFPGRD 158

Query: 163 IFSTLKKMALGQSLYGPSMTVIFFSMNAFLQG 190
           IFSTLKKMA+GQ +YGP+MTVIFFS+NA LQG
Sbjct: 159 IFSTLKKMAMGQGIYGPAMTVIFFSLNAGLQG 190

The following BLAST results are available for this feature:
BLAST of CmoCh04G004900 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PX24D_DICDI2.9e-1235.19PXMP2/4 family protein 4 OS=Dictyostelium discoideum GN=DDB_G0290631 PE=3 SV=1[more]
SYM1_NEUCR6.0e-1031.86Protein sym-1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 ... [more]
SYM1_GIBZE7.9e-1032.74Protein SYM1 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL ... [more]
SYM1_ASPOR7.9e-1034.55Protein sym1 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=sym1 PE=3 SV=... [more]
PXMP2_MOUSE2.5e-0828.24Peroxisomal membrane protein 2 OS=Mus musculus GN=Pxmp2 PE=1 SV=2[more]
BLAST of CmoCh04G004900 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KT72_CUCSA2.3e-8081.05Uncharacterized protein OS=Cucumis sativus GN=Csa_4G000970 PE=3 SV=1[more]
W9RXU9_9ROSA8.7e-4857.29PXMP2/4 family protein 4 OS=Morus notabilis GN=L484_011519 PE=3 SV=1[more]
A0A072VQF9_MEDTR1.1e-4765.13Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein OS=Medicago truncatula ... [more]
R0I7M1_9BRAS1.5e-4761.18Uncharacterized protein OS=Capsella rubella GN=CARUB_v10015735mg PE=3 SV=1[more]
M5VMX2_PRUPE1.5e-4754.08Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010201mg PE=3 SV=1[more]
BLAST of CmoCh04G004900 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G14860.17.7e-4864.63 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein[more]
AT4G33905.11.6e-4561.90 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein[more]
AT5G43140.13.6e-2950.00 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein[more]
AT5G19750.12.4e-1231.30 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein[more]
AT2G42770.11.3e-0734.92 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein[more]
BLAST of CmoCh04G004900 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659108774|ref|XP_008454382.1|6.5e-8181.05PREDICTED: PXMP2/4 family protein 4 [Cucumis melo][more]
gi|700197620|gb|KGN52778.1|3.2e-8081.05hypothetical protein Csa_4G000970 [Cucumis sativus][more]
gi|778689211|ref|XP_004152269.2|3.2e-8081.05PREDICTED: PXMP2/4 family protein 4 [Cucumis sativus][more]
gi|703108635|ref|XP_010099084.1|1.2e-4757.29PXMP2/4 family protein 4 [Morus notabilis][more]
gi|922407379|ref|XP_013469994.1|1.6e-4765.13peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein [Medicago truncatula][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR007248Mpv17_PMP22
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G004900.1CmoCh04G004900.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007248Mpv17/PMP22PANTHERPTHR11266PEROXISOMAL MEMBRANE PROTEIN 2, PXMP2 MPV17coord: 36..189
score: 4.1
NoneNo IPR availablePANTHERPTHR11266:SF1822 KDA PEROXISOMAL MEMBRANE PROTEINcoord: 36..189
score: 4.1

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh04G004900Silver-seed gourdcarcmoB0403
CmoCh04G004900Silver-seed gourdcarcmoB0514
CmoCh04G004900Silver-seed gourdcarcmoB0616
CmoCh04G004900Cucumber (Chinese Long) v3cmocucB0811
CmoCh04G004900Cucumber (Chinese Long) v3cmocucB0829
CmoCh04G004900Cucumber (Chinese Long) v3cmocucB0839
CmoCh04G004900Cucumber (Chinese Long) v3cmocucB0905
CmoCh04G004900Cucumber (Chinese Long) v3cmocucB0910
CmoCh04G004900Watermelon (97103) v2cmowmbB684
CmoCh04G004900Watermelon (97103) v2cmowmbB717
CmoCh04G004900Watermelon (97103) v2cmowmbB742
CmoCh04G004900Watermelon (97103) v2cmowmbB766
CmoCh04G004900Wax gourdcmowgoB0810
CmoCh04G004900Wax gourdcmowgoB0872
CmoCh04G004900Wax gourdcmowgoB0880
CmoCh04G004900Wax gourdcmowgoB0916
CmoCh04G004900Cucurbita moschata (Rifu)cmocmoB125
CmoCh04G004900Cucurbita moschata (Rifu)cmocmoB286
CmoCh04G004900Cucurbita moschata (Rifu)cmocmoB395
CmoCh04G004900Cucurbita moschata (Rifu)cmocmoB477
CmoCh04G004900Cucumber (Gy14) v1cgycmoB0198
CmoCh04G004900Cucumber (Gy14) v1cgycmoB0228
CmoCh04G004900Cucumber (Gy14) v1cgycmoB0632
CmoCh04G004900Cucurbita maxima (Rimu)cmacmoB156
CmoCh04G004900Cucurbita maxima (Rimu)cmacmoB338
CmoCh04G004900Cucurbita maxima (Rimu)cmacmoB530
CmoCh04G004900Cucurbita maxima (Rimu)cmacmoB728
CmoCh04G004900Wild cucumber (PI 183967)cmocpiB709
CmoCh04G004900Wild cucumber (PI 183967)cmocpiB777
CmoCh04G004900Cucumber (Chinese Long) v2cmocuB701
CmoCh04G004900Cucumber (Chinese Long) v2cmocuB713
CmoCh04G004900Cucumber (Chinese Long) v2cmocuB766
CmoCh04G004900Cucumber (Chinese Long) v2cmocuB769
CmoCh04G004900Melon (DHL92) v3.5.1cmomeB665
CmoCh04G004900Melon (DHL92) v3.5.1cmomeB692
CmoCh04G004900Melon (DHL92) v3.5.1cmomeB703
CmoCh04G004900Watermelon (Charleston Gray)cmowcgB610
CmoCh04G004900Watermelon (Charleston Gray)cmowcgB645
CmoCh04G004900Watermelon (97103) v1cmowmB648
CmoCh04G004900Watermelon (97103) v1cmowmB721
CmoCh04G004900Cucurbita pepo (Zucchini)cmocpeB668
CmoCh04G004900Cucurbita pepo (Zucchini)cmocpeB673
CmoCh04G004900Cucurbita pepo (Zucchini)cmocpeB703
CmoCh04G004900Bottle gourd (USVL1VR-Ls)cmolsiB627
CmoCh04G004900Bottle gourd (USVL1VR-Ls)cmolsiB646
CmoCh04G004900Bottle gourd (USVL1VR-Ls)cmolsiB650
CmoCh04G004900Bottle gourd (USVL1VR-Ls)cmolsiB666
CmoCh04G004900Bottle gourd (USVL1VR-Ls)cmolsiB701
CmoCh04G004900Cucumber (Gy14) v2cgybcmoB235
CmoCh04G004900Cucumber (Gy14) v2cgybcmoB517
CmoCh04G004900Cucumber (Gy14) v2cgybcmoB527
CmoCh04G004900Cucumber (Gy14) v2cgybcmoB822
CmoCh04G004900Melon (DHL92) v3.6.1cmomedB751
CmoCh04G004900Melon (DHL92) v3.6.1cmomedB765
CmoCh04G004900Melon (DHL92) v3.6.1cmomedB783
CmoCh04G004900Melon (DHL92) v3.6.1cmomedB786
CmoCh04G004900Melon (DHL92) v3.6.1cmomedB800