CmoCh04G004410.1 (mRNA) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G004410.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	(MADS-box transcription factor 27) (1.3.1.74)
Location	Cmo_Chr04 : 2187309 .. 2188117 (+)
Sequence length	483

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTAATATAATCCAACACTTCAAACAAATACGCAAAAGAATTCATAATATATCTTGTGCTTCTATATTTGCAGACAATTGATGGGCGAAGAACTATCTGGCCTGAGTGTCAAAGATCTACAAAATCTAGAAAACAAGTTGGAAATGAGCTTGAAAGGTGTCCGTGTAGAAAAGGTATAAACTATGAAGAGATCTCAAATAGAAACATTCACCTGATAAAGCCTCTTGAATACAGATGTTTACTTCTTGTATTTACCTTGCAGGAAAAGATTTTAAGGGATGAAATTACGGAACTAAGACAGAAGGTTTCTCCCCATTGTAAACATCCATGTTATCTGATGATATCAAGTACAGTAACATCAGCTGACTTGCTATAATTATGTTGCAGGGGAATCATATGCATCAAGAAAATGTGGAACTATACAAGAAGTTAGATATGATTCACAAGGAAAATGCAGAACTGCAAATGAAGGTAGAGTTCCAAACTTTTTTTCAATTGCTTCAATGTGAACAACTTCTTCAAAAGCTACTCTTGTTTAGTCATAAGATTTTTTTAGTTCGACAGCGGGAGTTCAATTGTCCTGAAAACGGACTTTTATTTCCTGTTAAATAAGCTTATTGGTGGGTTTTTTAAGTATATCAGGTTTATGGACCAATGGAAGTGGATAAAACGAGCAGTAGCTCAACTCAACAATTCACTATCACCAATAGATACAGTATGCCTGCTCTACAGCTAAGACAGCCACAACCACAAAACAGTGAAACATCAGTACCAGGGATAAAGCTGGGGTATGTTCTAGTAATCTAA

mRNA sequence

ATGACAATTGATGGGCGAAGAACTATCTGGCCTGAGTGTCAAAGATCTACAAAATCTAGAAAACAAGTTGGAAATGAGCTTGAAAGGTGTCCGTGTAGAAAAGGTATAAACTATGAAGAGATCTCAAATAGAAACATTCACCTGATAAAGCCTCTTGAATACAGATGTTTACTTCTTGTATTTACCTTGCAGGAAAAGATTTTAAGGGATGAAATTACGGAACTAAGACAGAAGGGGAATCATATGCATCAAGAAAATGTGGAACTATACAAGAAGTTAGATATGATTCACAAGGAAAATGCAGAACTGCAAATGAAGGTTTATGGACCAATGGAAGTGGATAAAACGAGCAGTAGCTCAACTCAACAATTCACTATCACCAATAGATACAGTATGCCTGCTCTACAGCTAAGACAGCCACAACCACAAAACAGTGAAACATCAGTACCAGGGATAAAGCTGGGGTATGTTCTAGTAATCTAA

Coding sequence (CDS)

ATGACAATTGATGGGCGAAGAACTATCTGGCCTGAGTGTCAAAGATCTACAAAATCTAGAAAACAAGTTGGAAATGAGCTTGAAAGGTGTCCGTGTAGAAAAGGTATAAACTATGAAGAGATCTCAAATAGAAACATTCACCTGATAAAGCCTCTTGAATACAGATGTTTACTTCTTGTATTTACCTTGCAGGAAAAGATTTTAAGGGATGAAATTACGGAACTAAGACAGAAGGGGAATCATATGCATCAAGAAAATGTGGAACTATACAAGAAGTTAGATATGATTCACAAGGAAAATGCAGAACTGCAAATGAAGGTTTATGGACCAATGGAAGTGGATAAAACGAGCAGTAGCTCAACTCAACAATTCACTATCACCAATAGATACAGTATGCCTGCTCTACAGCTAAGACAGCCACAACCACAAAACAGTGAAACATCAGTACCAGGGATAAAGCTGGGGTATGTTCTAGTAATCTAA

Homology

[Close]

BLAST of CmoCh04G004410.1 vs. Swiss-Prot
Match: MAD27_ORYSJ (MADS-box transcription factor 27 OS=Oryza sativa subsp. japonica GN=MADS27 PE=2 SV=2)

HSP 1 Score: 66.6 bits (161), Expect = 2.8e-10
Identity = 43/114 (37.72%), Postives = 69/114 (60.53%), Query Frame = 1


Query: 39  EEISNRNIHLIKPLEYRC---LLLVFTLQEKILRDEITELRQKGNHMHQENVELYKKLDM 98
           E++S  N+  ++ LE +    L  V T ++ +L DEI EL +KG+ +HQEN+ELYKK+ +
Sbjct: 113 EDLSGLNVKELQSLENQLEISLRSVRTKKDHVLIDEIHELNRKGSLVHQENMELYKKISL 172

Query: 99  IHKENAELQMKVY---GPMEVDKTSSSSTQQFTITNRYSMPALQLRQPQPQNSE 147
           I +ENAEL  K+Y   GP EV++  S +   F +  + ++P        PQ+S+
Sbjct: 173 IRQENAELYKKIYETEGPSEVNR-DSPTPYNFAVIEKTNVPVQLGLSTLPQHSD 225

[Close]

BLAST of CmoCh04G004410.1 vs. Swiss-Prot
Match: ANR1_ARATH (MADS-box transcription factor ANR1 OS=Arabidopsis thaliana GN=ANR1 PE=1 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.3e-07
Identity = 44/130 (33.85%), Postives = 67/130 (51.54%), Query Frame = 1


Query: 20  RKQVGNELERCPCRKGINYEEISNRNIHLIKPLEYRCLLLVFTLQEKILRDEITELRQKG 79
           RK VG EL       G+N  ++ N    L+  L+      V   +++++ +EI EL +KG
Sbjct: 109 RKLVGEELS------GMNANDLQNLEDQLVTSLKG-----VRLKKDQLMTNEIRELNRKG 168

Query: 80  NHMHQENVELYKKLDMIHKENAELQMKVYGPMEVDKTSSSSTQQFTITNRYSMPALQLRQ 139
             + +EN EL   +D++ KEN +LQ KV+G     + +SS       T  Y+ P LQL Q
Sbjct: 169 QIIQKENHELQNIVDIMRKENIKLQKKVHGRTNAIEGNSSVDPISNGTTTYAPPQLQLIQ 227

Query: 140 PQPQNSETSV 150
            QP   E S+
Sbjct: 229 LQPAPREKSI 227

[Close]

BLAST of CmoCh04G004410.1 vs. Swiss-Prot
Match: AGL21_ARATH (Agamous-like MADS-box protein AGL21 OS=Arabidopsis thaliana GN=AGL21 PE=1 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 3.2e-06
Identity = 30/87 (34.48%), Postives = 52/87 (59.77%), Query Frame = 1


Query: 64  QEKILRDEITELRQKGNHMHQENVELYKKLDMIHKENAELQMKVYGPMEVDKTSSSSTQQ 123
           +E++L  EI EL QK N +HQEN++L +K+  IH+EN EL  K Y    +  T+  + ++
Sbjct: 141 KEQLLTQEIQELSQKRNLIHQENLDLSRKVQRIHQENVELYKKAY----MANTNGFTHRE 200

Query: 124 FTITNRYSMPALQLRQPQPQNSETSVP 151
             + +  S   ++L+  QP++S+   P
Sbjct: 201 VAVADDESHTQIRLQLSQPEHSDYDTP 223

[Close]

BLAST of CmoCh04G004410.1 vs. Swiss-Prot
Match: AGL17_ARATH (Agamous-like MADS-box protein AGL17 OS=Arabidopsis thaliana GN=AGL17 PE=2 SV=2)

HSP 1 Score: 51.6 bits (122), Expect = 9.2e-06
Identity = 31/85 (36.47%), Postives = 47/85 (55.29%), Query Frame = 1


Query: 64  QEKILRDEITELRQKGNHMHQENVELYKKLDMIHKENAELQMKVYGPMEVDKTSSSSTQQ 123
           +E+IL +EI EL +K N +H EN+EL +K+  IH+EN EL  K YG    +         
Sbjct: 141 REQILTNEIKELTRKRNLVHHENLELSRKVQRIHQENVELYKKAYGTSNTNGLGHHELVD 200

Query: 124 FTITNRYSMPALQLRQPQPQNSETS 149
             +   ++   LQL QP+  + +TS
Sbjct: 201 -AVYESHAQVRLQLSQPEQSHYKTS 224

[Close]

BLAST of CmoCh04G004410.1 vs. TrEMBL
Match: A0A0A0KZU2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G181200 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 6.6e-35
Identity = 88/130 (67.69%), Postives = 101/130 (77.69%), Query Frame = 1


Query: 32  CRKGINYEEISNRNIHLIKPLEYRC---LLLVFTLQEKILRDEITELRQKGNHMHQENVE 91
           C + +  EE+S  ++  ++ LE +    L  V   +EK L DEITEL+QKGNHMHQENVE
Sbjct: 78  CHRQLMGEELSGLSVKDLQNLESQLEMSLKGVRVKKEKTLSDEITELKQKGNHMHQENVE 137

Query: 92  LYKKLDMIHKENAELQMKVYGPMEVDKTSSSSTQQFTITNRYSMPALQLRQPQPQNSETS 151
           LYK+LDM  KENAELQMK YGPME+DKTSSSS QQFTITNRYSMPALQLRQPQPQN+ET 
Sbjct: 138 LYKRLDMTRKENAELQMKAYGPMEIDKTSSSS-QQFTITNRYSMPALQLRQPQPQNNET- 197

Query: 152 VPGIKLGYVL 159
            PGIKLG  L
Sbjct: 198 -PGIKLGLQL 204

[Close]

BLAST of CmoCh04G004410.1 vs. TrEMBL
Match: A0A151R2Y1_CAJCA (MADS-box transcription factor 27 OS=Cajanus cajan GN=KK1_041884 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 9.6e-18
Identity = 61/133 (45.86%), Postives = 82/133 (61.65%), Query Frame = 1


Query: 32  CRKGINYEEISNRNIHLIKPLEYRC---LLLVFTLQEKILRDEITELRQKGNHMHQENVE 91
           C + +  EE+S   I  ++ LE +    L  V   +++IL +EI ELRQKGN +HQENVE
Sbjct: 45  CHRQLMGEELSGLGIKELQNLENQLEMSLKGVRMKKDQILTNEIKELRQKGNLIHQENVE 104

Query: 92  LYKKLDMIHKENAELQMKVYGPMEVDKTSSSSTQQFTITNRYSMPA---LQLRQPQPQNS 151
           LY+K+D I KENAELQ KVY     ++ + +S   + + N Y + A   LQL QPQPQ S
Sbjct: 105 LYRKMDQIQKENAELQKKVYEARSTNEENVASNPSYMVRNGYDLHAPISLQLSQPQPQYS 164

Query: 152 ETSVPGIKLGYVL 159
           E S   +KLGY L
Sbjct: 165 EPSAKAMKLGYSL 177

[Close]

BLAST of CmoCh04G004410.1 vs. TrEMBL
Match: K7M9V8_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 4.7e-17
Identity = 60/133 (45.11%), Postives = 81/133 (60.90%), Query Frame = 1


Query: 32  CRKGINYEEISNRNIHLIKPLEYRC---LLLVFTLQEKILRDEITELRQKGNHMHQENVE 91
           C + +  EE+    I  ++ LE +    L  V   +++IL +EI ELRQKGN +HQENVE
Sbjct: 59  CHRQLMGEELMGLGIKELQSLENQLEMSLKGVRMKKDQILTNEIEELRQKGNLIHQENVE 118

Query: 92  LYKKLDMIHKENAELQMKVYGPMEVDKTSSSSTQQFTITNRYSMPA---LQLRQPQPQNS 151
           LY+K++ I KENAELQ KVY     ++ + +S   + + N Y + A   LQL QPQPQ S
Sbjct: 119 LYQKMEQIQKENAELQKKVYEARSTNEENVASNPSYKVRNGYDLHAPISLQLSQPQPQYS 178

Query: 152 ETSVPGIKLGYVL 159
           E S   IKLGY L
Sbjct: 179 EPSAKAIKLGYPL 191

[Close]

BLAST of CmoCh04G004410.1 vs. TrEMBL
Match: A0A0R0G677_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_15G059600 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 4.7e-17
Identity = 60/133 (45.11%), Postives = 81/133 (60.90%), Query Frame = 1


Query: 32  CRKGINYEEISNRNIHLIKPLEYRC---LLLVFTLQEKILRDEITELRQKGNHMHQENVE 91
           C + +  EE+    I  ++ LE +    L  V   +++IL +EI ELRQKGN +HQENVE
Sbjct: 106 CHRQLMGEELMGLGIKELQSLENQLEMSLKGVRMKKDQILTNEIEELRQKGNLIHQENVE 165

Query: 92  LYKKLDMIHKENAELQMKVYGPMEVDKTSSSSTQQFTITNRYSMPA---LQLRQPQPQNS 151
           LY+K++ I KENAELQ KVY     ++ + +S   + + N Y + A   LQL QPQPQ S
Sbjct: 166 LYQKMEQIQKENAELQKKVYEARSTNEENVASNPSYKVRNGYDLHAPISLQLSQPQPQYS 225

Query: 152 ETSVPGIKLGYVL 159
           E S   IKLGY L
Sbjct: 226 EPSAKAIKLGYPL 238

[Close]

BLAST of CmoCh04G004410.1 vs. TrEMBL
Match: V7BTG6_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_006G200300g PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 3.1e-16
Identity = 59/133 (44.36%), Postives = 81/133 (60.90%), Query Frame = 1


Query: 32  CRKGINYEEISNRNIHLIKPLEYRC---LLLVFTLQEKILRDEITELRQKGNHMHQENVE 91
           C + +  EE++   I  ++ LE +    L  V   +++IL  EI ELRQKGN +HQ+NVE
Sbjct: 25  CHRQLMGEELTGLGIKELQNLENQLEMSLKGVRMKKDQILTSEIKELRQKGNLIHQDNVE 84

Query: 92  LYKKLDMIHKENAELQMKVYGPMEVDKTSSSSTQQFTITNRYSMPA---LQLRQPQPQNS 151
           LY+K+D I KENAELQ KVYG     + +++S   F + N Y + A   LQL QPQ Q S
Sbjct: 85  LYQKMDQIQKENAELQKKVYGSRSTGEENAASNPSFMVRNGYDLHAPIGLQLSQPQTQYS 144

Query: 152 ETSVPGIKLGYVL 159
           E+S   +KLG  L
Sbjct: 145 ESSAKVMKLGLQL 157

[Close]

BLAST of CmoCh04G004410.1 vs. TAIR10
Match: AT2G14210.1 (AT2G14210.1 AGAMOUS-like 44)

HSP 1 Score: 57.8 bits (138), Expect = 7.3e-09
Identity = 44/130 (33.85%), Postives = 67/130 (51.54%), Query Frame = 1


Query: 20  RKQVGNELERCPCRKGINYEEISNRNIHLIKPLEYRCLLLVFTLQEKILRDEITELRQKG 79
           RK VG EL       G+N  ++ N    L+  L+      V   +++++ +EI EL +KG
Sbjct: 109 RKLVGEELS------GMNANDLQNLEDQLVTSLKG-----VRLKKDQLMTNEIRELNRKG 168

Query: 80  NHMHQENVELYKKLDMIHKENAELQMKVYGPMEVDKTSSSSTQQFTITNRYSMPALQLRQ 139
             + +EN EL   +D++ KEN +LQ KV+G     + +SS       T  Y+ P LQL Q
Sbjct: 169 QIIQKENHELQNIVDIMRKENIKLQKKVHGRTNAIEGNSSVDPISNGTTTYAPPQLQLIQ 227

Query: 140 PQPQNSETSV 150
            QP   E S+
Sbjct: 229 LQPAPREKSI 227

[Close]

BLAST of CmoCh04G004410.1 vs. TAIR10
Match: AT4G37940.1 (AT4G37940.1 AGAMOUS-like 21)

HSP 1 Score: 53.1 bits (126), Expect = 1.8e-07
Identity = 30/87 (34.48%), Postives = 52/87 (59.77%), Query Frame = 1


Query: 64  QEKILRDEITELRQKGNHMHQENVELYKKLDMIHKENAELQMKVYGPMEVDKTSSSSTQQ 123
           +E++L  EI EL QK N +HQEN++L +K+  IH+EN EL  K Y    +  T+  + ++
Sbjct: 141 KEQLLTQEIQELSQKRNLIHQENLDLSRKVQRIHQENVELYKKAY----MANTNGFTHRE 200

Query: 124 FTITNRYSMPALQLRQPQPQNSETSVP 151
             + +  S   ++L+  QP++S+   P
Sbjct: 201 VAVADDESHTQIRLQLSQPEHSDYDTP 223

[Close]

BLAST of CmoCh04G004410.1 vs. TAIR10
Match: AT2G22630.1 (AT2G22630.1 AGAMOUS-like 17)

HSP 1 Score: 51.6 bits (122), Expect = 5.2e-07
Identity = 31/85 (36.47%), Postives = 47/85 (55.29%), Query Frame = 1


Query: 64  QEKILRDEITELRQKGNHMHQENVELYKKLDMIHKENAELQMKVYGPMEVDKTSSSSTQQ 123
           +E+IL +EI EL +K N +H EN+EL +K+  IH+EN EL  K YG    +         
Sbjct: 141 REQILTNEIKELTRKRNLVHHENLELSRKVQRIHQENVELYKKAYGTSNTNGLGHHELVD 200

Query: 124 FTITNRYSMPALQLRQPQPQNSETS 149
             +   ++   LQL QP+  + +TS
Sbjct: 201 -AVYESHAQVRLQLSQPEQSHYKTS 224

[Close]

BLAST of CmoCh04G004410.1 vs. TAIR10
Match: AT3G57230.1 (AT3G57230.1 AGAMOUS-like 16)

HSP 1 Score: 50.1 bits (118), Expect = 1.5e-06
Identity = 42/128 (32.81%), Postives = 71/128 (55.47%), Query Frame = 1


Query: 39  EEISNRNIHLIKPLEYRCLLL---VFTLQEKILRDEITELRQKGNHMHQENVELYKKLDM 98
           EE+S  ++  ++ LE +  L    V   ++++L +EI  L ++GN +HQEN++L+KK+++
Sbjct: 113 EELSGLSVEALQNLENQLELSLRGVRMKKDQMLIEEIQVLNREGNLVHQENLDLHKKVNL 172

Query: 99  IHKENAELQMKVYGPMEVDKTSSSSTQQFTITNRYSM-------PALQLRQPQPQNSETS 157
           +H++N EL  KV    EV+    ++     +TN   M         LQL QPQ  + ET 
Sbjct: 173 MHQQNMELHEKV---SEVEGVKIANKNSL-LTNGLDMRDTSNEHVHLQLSQPQ-HDHETH 232

[Close]

BLAST of CmoCh04G004410.1 vs. NCBI nr
Match: gi|659108914|ref|XP_008454453.1| (PREDICTED: MADS-box transcription factor 23 isoform X2 [Cucumis melo])

HSP 1 Score: 172.6 bits (436), Expect = 5.7e-40
Identity = 94/132 (71.21%), Postives = 107/132 (81.06%), Query Frame = 1


Query: 32  CRKGINYEEISNRNIHLIKPLEYRC---LLLVFTLQEKILRDEITELRQKGNHMHQENVE 91
           C + +  EE+S  ++  ++ LE +    L  V   +EKIL DEITEL+QKGNHMHQENVE
Sbjct: 106 CHRQLMGEELSGLSVKDLQNLESQLEMSLKGVRVKKEKILSDEITELKQKGNHMHQENVE 165

Query: 92  LYKKLDMIHKENAELQMKVYGPMEVDKTSSSSTQQFTITNRYSMPALQLRQPQPQNSETS 151
           LYKKLD+I KENAELQMK YGPME+DKTSSSS QQFTITNRYSMP LQLRQPQPQN ETS
Sbjct: 166 LYKKLDLIRKENAELQMKAYGPMEIDKTSSSS-QQFTITNRYSMPGLQLRQPQPQNHETS 225

Query: 152 VPGIKLGYVLVI 161
           +PGIKLGYVLVI
Sbjct: 226 IPGIKLGYVLVI 236

[Close]

BLAST of CmoCh04G004410.1 vs. NCBI nr
Match: gi|659108911|ref|XP_008454452.1| (PREDICTED: MADS-box transcription factor 23 isoform X1 [Cucumis melo])

HSP 1 Score: 167.5 bits (423), Expect = 1.8e-38
Identity = 94/134 (70.15%), Postives = 107/134 (79.85%), Query Frame = 1


Query: 32  CRKGINYEEISNRNIHLIKPLEYRC---LLLVFTLQEKILRDEITELRQKGNHMHQENVE 91
           C + +  EE+S  ++  ++ LE +    L  V   +EKIL DEITEL+QKGNHMHQENVE
Sbjct: 106 CHRQLMGEELSGLSVKDLQNLESQLEMSLKGVRVKKEKILSDEITELKQKGNHMHQENVE 165

Query: 92  LYKKLDMIHKENAELQMK--VYGPMEVDKTSSSSTQQFTITNRYSMPALQLRQPQPQNSE 151
           LYKKLD+I KENAELQMK   YGPME+DKTSSSS QQFTITNRYSMP LQLRQPQPQN E
Sbjct: 166 LYKKLDLIRKENAELQMKYQAYGPMEIDKTSSSS-QQFTITNRYSMPGLQLRQPQPQNHE 225

Query: 152 TSVPGIKLGYVLVI 161
           TS+PGIKLGYVLVI
Sbjct: 226 TSIPGIKLGYVLVI 238

[Close]

BLAST of CmoCh04G004410.1 vs. NCBI nr
Match: gi|449459616|ref|XP_004147542.1| (PREDICTED: MADS-box transcription factor 23 isoform X2 [Cucumis sativus])

HSP 1 Score: 161.8 bits (408), Expect = 1.0e-36
Identity = 91/132 (68.94%), Postives = 104/132 (78.79%), Query Frame = 1


Query: 32  CRKGINYEEISNRNIHLIKPLEYRC---LLLVFTLQEKILRDEITELRQKGNHMHQENVE 91
           C + +  EE+S  ++  ++ LE +    L  V   +EK L DEITEL+QKGNHMHQENVE
Sbjct: 106 CHRQLMGEELSGLSVKDLQNLESQLEMSLKGVRVKKEKTLSDEITELKQKGNHMHQENVE 165

Query: 92  LYKKLDMIHKENAELQMKVYGPMEVDKTSSSSTQQFTITNRYSMPALQLRQPQPQNSETS 151
           LYK+LDM  KENAELQMK YGPME+DKTSSSS QQFTITNRYSMPALQLRQPQPQN+ET 
Sbjct: 166 LYKRLDMTRKENAELQMKAYGPMEIDKTSSSS-QQFTITNRYSMPALQLRQPQPQNNET- 225

Query: 152 VPGIKLGYVLVI 161
            PGIKLGYVL I
Sbjct: 226 -PGIKLGYVLAI 234

[Close]

BLAST of CmoCh04G004410.1 vs. NCBI nr
Match: gi|659108916|ref|XP_008454454.1| (PREDICTED: MADS-box transcription factor 23 isoform X3 [Cucumis melo])

HSP 1 Score: 159.5 bits (402), Expect = 5.0e-36
Identity = 90/132 (68.18%), Postives = 103/132 (78.03%), Query Frame = 1


Query: 32  CRKGINYEEISNRNIHLIKPLEYRC---LLLVFTLQEKILRDEITELRQKGNHMHQENVE 91
           C + +  EE+S  ++  ++ LE +    L  V   +EKIL DEITEL+QKGNHMHQENVE
Sbjct: 106 CHRQLMGEELSGLSVKDLQNLESQLEMSLKGVRVKKEKILSDEITELKQKGNHMHQENVE 165

Query: 92  LYKKLDMIHKENAELQMK--VYGPMEVDKTSSSSTQQFTITNRYSMPALQLRQPQPQNSE 151
           LYKKLD+I KENAELQMK   YGPME+DKTSSSS QQFTITNRYSMP LQLRQPQPQN E
Sbjct: 166 LYKKLDLIRKENAELQMKYQAYGPMEIDKTSSSS-QQFTITNRYSMPGLQLRQPQPQNHE 225

Query: 152 TSVPGIKLGYVL 159
           TS+PGIKLG  L
Sbjct: 226 TSIPGIKLGLQL 236

[Close]

BLAST of CmoCh04G004410.1 vs. NCBI nr
Match: gi|778692345|ref|XP_011653446.1| (PREDICTED: MADS-box transcription factor 23 isoform X1 [Cucumis sativus])

HSP 1 Score: 156.8 bits (395), Expect = 3.3e-35
Identity = 91/134 (67.91%), Postives = 104/134 (77.61%), Query Frame = 1


Query: 32  CRKGINYEEISNRNIHLIKPLEYRC---LLLVFTLQEKILRDEITELRQKGNHMHQENVE 91
           C + +  EE+S  ++  ++ LE +    L  V   +EK L DEITEL+QKGNHMHQENVE
Sbjct: 106 CHRQLMGEELSGLSVKDLQNLESQLEMSLKGVRVKKEKTLSDEITELKQKGNHMHQENVE 165

Query: 92  LYKKLDMIHKENAELQMK--VYGPMEVDKTSSSSTQQFTITNRYSMPALQLRQPQPQNSE 151
           LYK+LDM  KENAELQMK   YGPME+DKTSSSS QQFTITNRYSMPALQLRQPQPQN+E
Sbjct: 166 LYKRLDMTRKENAELQMKYQAYGPMEIDKTSSSS-QQFTITNRYSMPALQLRQPQPQNNE 225

Query: 152 TSVPGIKLGYVLVI 161
           T  PGIKLGYVL I
Sbjct: 226 T--PGIKLGYVLAI 236

The following BLAST results are available for this feature:

BLAST of CmoCh04G004410.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
MAD27_ORYSJ	2.8e-10	37.72	MADS-box transcription factor 27 OS=Oryza sativa subsp. japonica GN=MADS27 PE=2 ...	[more]
ANR1_ARATH	1.3e-07	33.85	MADS-box transcription factor ANR1 OS=Arabidopsis thaliana GN=ANR1 PE=1 SV=1	[more]
AGL21_ARATH	3.2e-06	34.48	Agamous-like MADS-box protein AGL21 OS=Arabidopsis thaliana GN=AGL21 PE=1 SV=1	[more]
AGL17_ARATH	9.2e-06	36.47	Agamous-like MADS-box protein AGL17 OS=Arabidopsis thaliana GN=AGL17 PE=2 SV=2	[more]

BLAST of CmoCh04G004410.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KZU2_CUCSA	6.6e-35	67.69	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G181200 PE=4 SV=1	[more]
A0A151R2Y1_CAJCA	9.6e-18	45.86	MADS-box transcription factor 27 OS=Cajanus cajan GN=KK1_041884 PE=4 SV=1	[more]
K7M9V8_SOYBN	4.7e-17	45.11	Uncharacterized protein OS=Glycine max PE=4 SV=1	[more]
A0A0R0G677_SOYBN	4.7e-17	45.11	Uncharacterized protein OS=Glycine max GN=GLYMA_15G059600 PE=4 SV=1	[more]
V7BTG6_PHAVU	3.1e-16	44.36	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_006G200300g PE=4 SV=1	[more]

BLAST of CmoCh04G004410.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G14210.1	7.3e-09	33.85	AGAMOUS-like 44	[more]
AT4G37940.1	1.8e-07	34.48	AGAMOUS-like 21	[more]
AT2G22630.1	5.2e-07	36.47	AGAMOUS-like 17	[more]
AT3G57230.1	1.5e-06	32.81	AGAMOUS-like 16	[more]

BLAST of CmoCh04G004410.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659108914\|ref\|XP_008454453.1\|	5.7e-40	71.21	PREDICTED: MADS-box transcription factor 23 isoform X2 [Cucumis melo]	[more]
gi\|659108911\|ref\|XP_008454452.1\|	1.8e-38	70.15	PREDICTED: MADS-box transcription factor 23 isoform X1 [Cucumis melo]	[more]
gi\|449459616\|ref\|XP_004147542.1\|	1.0e-36	68.94	PREDICTED: MADS-box transcription factor 23 isoform X2 [Cucumis sativus]	[more]
gi\|659108916\|ref\|XP_008454454.1\|	5.0e-36	68.18	PREDICTED: MADS-box transcription factor 23 isoform X3 [Cucumis melo]	[more]
gi\|778692345\|ref\|XP_011653446.1\|	3.3e-35	67.91	PREDICTED: MADS-box transcription factor 23 isoform X1 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009653	anatomical structure morphogenesis
biological_process	GO:0048513	animal organ development
biological_process	GO:0044085	cellular component biogenesis
biological_process	GO:0048869	cellular developmental process
biological_process	GO:0044036	cell wall macromolecule metabolic process
biological_process	GO:0033043	regulation of organelle organization
biological_process	GO:0009888	tissue development
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005488	binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh04G004410	CmoCh04G004410	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh04G004410.1	CmoCh04G004410.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh04G004410.1.exon.1	CmoCh04G004410.1.exon.1	exon
CmoCh04G004410.1.exon.2	CmoCh04G004410.1.exon.2	exon
CmoCh04G004410.1.exon.3	CmoCh04G004410.1.exon.3	exon
CmoCh04G004410.1.exon.4	CmoCh04G004410.1.exon.4	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh04G004410.1.CDS.1	CmoCh04G004410.1.CDS.1	CDS
CmoCh04G004410.1.CDS.2	CmoCh04G004410.1.CDS.2	CDS
CmoCh04G004410.1.CDS.3	CmoCh04G004410.1.CDS.3	CDS
CmoCh04G004410.1.CDS.4	CmoCh04G004410.1.CDS.4	CDS

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11945	MADS BOX PROTEIN	coord: 65..158 score: 1.6
None	No IPR available	PANTHER	PTHR11945:SF184	SUBFAMILY NOT NAMED	coord: 65..158 score: 1.6