CmoCh04G004410 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G004410
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	(MADS-box transcription factor 27) (1.3.1.74)
Location	Cmo_Chr04 : 2187309 .. 2188117 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTAATATAATCCAACACTTCAAACAAATACGCAAAAGAATTCATAATATATCTTGTGCTTCTATATTTGCAGACAATTGATGGGCGAAGAACTATCTGGCCTGAGTGTCAAAGATCTACAAAATCTAGAAAACAAGTTGGAAATGAGCTTGAAAGGTGTCCGTGTAGAAAAGGTATAAACTATGAAGAGATCTCAAATAGAAACATTCACCTGATAAAGCCTCTTGAATACAGATGTTTACTTCTTGTATTTACCTTGCAGGAAAAGATTTTAAGGGATGAAATTACGGAACTAAGACAGAAGGTTTCTCCCCATTGTAAACATCCATGTTATCTGATGATATCAAGTACAGTAACATCAGCTGACTTGCTATAATTATGTTGCAGGGGAATCATATGCATCAAGAAAATGTGGAACTATACAAGAAGTTAGATATGATTCACAAGGAAAATGCAGAACTGCAAATGAAGGTAGAGTTCCAAACTTTTTTTCAATTGCTTCAATGTGAACAACTTCTTCAAAAGCTACTCTTGTTTAGTCATAAGATTTTTTTAGTTCGACAGCGGGAGTTCAATTGTCCTGAAAACGGACTTTTATTTCCTGTTAAATAAGCTTATTGGTGGGTTTTTTAAGTATATCAGGTTTATGGACCAATGGAAGTGGATAAAACGAGCAGTAGCTCAACTCAACAATTCACTATCACCAATAGATACAGTATGCCTGCTCTACAGCTAAGACAGCCACAACCACAAAACAGTGAAACATCAGTACCAGGGATAAAGCTGGGGTATGTTCTAGTAATCTAA

mRNA sequence

ATGACAATTGATGGGCGAAGAACTATCTGGCCTGAGTGTCAAAGATCTACAAAATCTAGAAAACAAGTTGGAAATGAGCTTGAAAGGTGTCCGTGTAGAAAAGGTATAAACTATGAAGAGATCTCAAATAGAAACATTCACCTGATAAAGCCTCTTGAATACAGATGTTTACTTCTTGTATTTACCTTGCAGGAAAAGATTTTAAGGGATGAAATTACGGAACTAAGACAGAAGGGGAATCATATGCATCAAGAAAATGTGGAACTATACAAGAAGTTAGATATGATTCACAAGGAAAATGCAGAACTGCAAATGAAGGTTTATGGACCAATGGAAGTGGATAAAACGAGCAGTAGCTCAACTCAACAATTCACTATCACCAATAGATACAGTATGCCTGCTCTACAGCTAAGACAGCCACAACCACAAAACAGTGAAACATCAGTACCAGGGATAAAGCTGGGGTATGTTCTAGTAATCTAA

Coding sequence (CDS)

ATGACAATTGATGGGCGAAGAACTATCTGGCCTGAGTGTCAAAGATCTACAAAATCTAGAAAACAAGTTGGAAATGAGCTTGAAAGGTGTCCGTGTAGAAAAGGTATAAACTATGAAGAGATCTCAAATAGAAACATTCACCTGATAAAGCCTCTTGAATACAGATGTTTACTTCTTGTATTTACCTTGCAGGAAAAGATTTTAAGGGATGAAATTACGGAACTAAGACAGAAGGGGAATCATATGCATCAAGAAAATGTGGAACTATACAAGAAGTTAGATATGATTCACAAGGAAAATGCAGAACTGCAAATGAAGGTTTATGGACCAATGGAAGTGGATAAAACGAGCAGTAGCTCAACTCAACAATTCACTATCACCAATAGATACAGTATGCCTGCTCTACAGCTAAGACAGCCACAACCACAAAACAGTGAAACATCAGTACCAGGGATAAAGCTGGGGTATGTTCTAGTAATCTAA

Homology

[Close]

BLAST of CmoCh04G004410 vs. Swiss-Prot
Match: MAD27_ORYSJ (MADS-box transcription factor 27 OS=Oryza sativa subsp. japonica GN=MADS27 PE=2 SV=2)

HSP 1 Score: 66.6 bits (161), Expect = 2.8e-10
Identity = 43/114 (37.72%), Postives = 69/114 (60.53%), Query Frame = 1


Query: 39  EEISNRNIHLIKPLEYRC---LLLVFTLQEKILRDEITELRQKGNHMHQENVELYKKLDM 98
           E++S  N+  ++ LE +    L  V T ++ +L DEI EL +KG+ +HQEN+ELYKK+ +
Sbjct: 113 EDLSGLNVKELQSLENQLEISLRSVRTKKDHVLIDEIHELNRKGSLVHQENMELYKKISL 172

Query: 99  IHKENAELQMKVY---GPMEVDKTSSSSTQQFTITNRYSMPALQLRQPQPQNSE 147
           I +ENAEL  K+Y   GP EV++  S +   F +  + ++P        PQ+S+
Sbjct: 173 IRQENAELYKKIYETEGPSEVNR-DSPTPYNFAVIEKTNVPVQLGLSTLPQHSD 225

[Close]

BLAST of CmoCh04G004410 vs. Swiss-Prot
Match: ANR1_ARATH (MADS-box transcription factor ANR1 OS=Arabidopsis thaliana GN=ANR1 PE=1 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.3e-07
Identity = 44/130 (33.85%), Postives = 67/130 (51.54%), Query Frame = 1


Query: 20  RKQVGNELERCPCRKGINYEEISNRNIHLIKPLEYRCLLLVFTLQEKILRDEITELRQKG 79
           RK VG EL       G+N  ++ N    L+  L+      V   +++++ +EI EL +KG
Sbjct: 109 RKLVGEELS------GMNANDLQNLEDQLVTSLKG-----VRLKKDQLMTNEIRELNRKG 168

Query: 80  NHMHQENVELYKKLDMIHKENAELQMKVYGPMEVDKTSSSSTQQFTITNRYSMPALQLRQ 139
             + +EN EL   +D++ KEN +LQ KV+G     + +SS       T  Y+ P LQL Q
Sbjct: 169 QIIQKENHELQNIVDIMRKENIKLQKKVHGRTNAIEGNSSVDPISNGTTTYAPPQLQLIQ 227

Query: 140 PQPQNSETSV 150
            QP   E S+
Sbjct: 229 LQPAPREKSI 227

[Close]

BLAST of CmoCh04G004410 vs. Swiss-Prot
Match: AGL21_ARATH (Agamous-like MADS-box protein AGL21 OS=Arabidopsis thaliana GN=AGL21 PE=1 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 3.2e-06
Identity = 30/87 (34.48%), Postives = 52/87 (59.77%), Query Frame = 1


Query: 64  QEKILRDEITELRQKGNHMHQENVELYKKLDMIHKENAELQMKVYGPMEVDKTSSSSTQQ 123
           +E++L  EI EL QK N +HQEN++L +K+  IH+EN EL  K Y    +  T+  + ++
Sbjct: 141 KEQLLTQEIQELSQKRNLIHQENLDLSRKVQRIHQENVELYKKAY----MANTNGFTHRE 200

Query: 124 FTITNRYSMPALQLRQPQPQNSETSVP 151
             + +  S   ++L+  QP++S+   P
Sbjct: 201 VAVADDESHTQIRLQLSQPEHSDYDTP 223

[Close]

BLAST of CmoCh04G004410 vs. Swiss-Prot
Match: AGL17_ARATH (Agamous-like MADS-box protein AGL17 OS=Arabidopsis thaliana GN=AGL17 PE=2 SV=2)

HSP 1 Score: 51.6 bits (122), Expect = 9.2e-06
Identity = 31/85 (36.47%), Postives = 47/85 (55.29%), Query Frame = 1


Query: 64  QEKILRDEITELRQKGNHMHQENVELYKKLDMIHKENAELQMKVYGPMEVDKTSSSSTQQ 123
           +E+IL +EI EL +K N +H EN+EL +K+  IH+EN EL  K YG    +         
Sbjct: 141 REQILTNEIKELTRKRNLVHHENLELSRKVQRIHQENVELYKKAYGTSNTNGLGHHELVD 200

Query: 124 FTITNRYSMPALQLRQPQPQNSETS 149
             +   ++   LQL QP+  + +TS
Sbjct: 201 -AVYESHAQVRLQLSQPEQSHYKTS 224

[Close]

BLAST of CmoCh04G004410 vs. TrEMBL
Match: A0A0A0KZU2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G181200 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 6.6e-35
Identity = 88/130 (67.69%), Postives = 101/130 (77.69%), Query Frame = 1


Query: 32  CRKGINYEEISNRNIHLIKPLEYRC---LLLVFTLQEKILRDEITELRQKGNHMHQENVE 91
           C + +  EE+S  ++  ++ LE +    L  V   +EK L DEITEL+QKGNHMHQENVE
Sbjct: 78  CHRQLMGEELSGLSVKDLQNLESQLEMSLKGVRVKKEKTLSDEITELKQKGNHMHQENVE 137

Query: 92  LYKKLDMIHKENAELQMKVYGPMEVDKTSSSSTQQFTITNRYSMPALQLRQPQPQNSETS 151
           LYK+LDM  KENAELQMK YGPME+DKTSSSS QQFTITNRYSMPALQLRQPQPQN+ET 
Sbjct: 138 LYKRLDMTRKENAELQMKAYGPMEIDKTSSSS-QQFTITNRYSMPALQLRQPQPQNNET- 197

Query: 152 VPGIKLGYVL 159
            PGIKLG  L
Sbjct: 198 -PGIKLGLQL 204

[Close]

BLAST of CmoCh04G004410 vs. TrEMBL
Match: A0A151R2Y1_CAJCA (MADS-box transcription factor 27 OS=Cajanus cajan GN=KK1_041884 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 9.6e-18
Identity = 61/133 (45.86%), Postives = 82/133 (61.65%), Query Frame = 1


Query: 32  CRKGINYEEISNRNIHLIKPLEYRC---LLLVFTLQEKILRDEITELRQKGNHMHQENVE 91
           C + +  EE+S   I  ++ LE +    L  V   +++IL +EI ELRQKGN +HQENVE
Sbjct: 45  CHRQLMGEELSGLGIKELQNLENQLEMSLKGVRMKKDQILTNEIKELRQKGNLIHQENVE 104

Query: 92  LYKKLDMIHKENAELQMKVYGPMEVDKTSSSSTQQFTITNRYSMPA---LQLRQPQPQNS 151
           LY+K+D I KENAELQ KVY     ++ + +S   + + N Y + A   LQL QPQPQ S
Sbjct: 105 LYRKMDQIQKENAELQKKVYEARSTNEENVASNPSYMVRNGYDLHAPISLQLSQPQPQYS 164

Query: 152 ETSVPGIKLGYVL 159
           E S   +KLGY L
Sbjct: 165 EPSAKAMKLGYSL 177

[Close]

BLAST of CmoCh04G004410 vs. TrEMBL
Match: K7M9V8_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 4.7e-17
Identity = 60/133 (45.11%), Postives = 81/133 (60.90%), Query Frame = 1


Query: 32  CRKGINYEEISNRNIHLIKPLEYRC---LLLVFTLQEKILRDEITELRQKGNHMHQENVE 91
           C + +  EE+    I  ++ LE +    L  V   +++IL +EI ELRQKGN +HQENVE
Sbjct: 59  CHRQLMGEELMGLGIKELQSLENQLEMSLKGVRMKKDQILTNEIEELRQKGNLIHQENVE 118

Query: 92  LYKKLDMIHKENAELQMKVYGPMEVDKTSSSSTQQFTITNRYSMPA---LQLRQPQPQNS 151
           LY+K++ I KENAELQ KVY     ++ + +S   + + N Y + A   LQL QPQPQ S
Sbjct: 119 LYQKMEQIQKENAELQKKVYEARSTNEENVASNPSYKVRNGYDLHAPISLQLSQPQPQYS 178

Query: 152 ETSVPGIKLGYVL 159
           E S   IKLGY L
Sbjct: 179 EPSAKAIKLGYPL 191

[Close]

BLAST of CmoCh04G004410 vs. TrEMBL
Match: A0A0R0G677_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_15G059600 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 4.7e-17
Identity = 60/133 (45.11%), Postives = 81/133 (60.90%), Query Frame = 1


Query: 32  CRKGINYEEISNRNIHLIKPLEYRC---LLLVFTLQEKILRDEITELRQKGNHMHQENVE 91
           C + +  EE+    I  ++ LE +    L  V   +++IL +EI ELRQKGN +HQENVE
Sbjct: 106 CHRQLMGEELMGLGIKELQSLENQLEMSLKGVRMKKDQILTNEIEELRQKGNLIHQENVE 165

Query: 92  LYKKLDMIHKENAELQMKVYGPMEVDKTSSSSTQQFTITNRYSMPA---LQLRQPQPQNS 151
           LY+K++ I KENAELQ KVY     ++ + +S   + + N Y + A   LQL QPQPQ S
Sbjct: 166 LYQKMEQIQKENAELQKKVYEARSTNEENVASNPSYKVRNGYDLHAPISLQLSQPQPQYS 225

Query: 152 ETSVPGIKLGYVL 159
           E S   IKLGY L
Sbjct: 226 EPSAKAIKLGYPL 238

[Close]

BLAST of CmoCh04G004410 vs. TrEMBL
Match: V7BTG6_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_006G200300g PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 3.1e-16
Identity = 59/133 (44.36%), Postives = 81/133 (60.90%), Query Frame = 1


Query: 32  CRKGINYEEISNRNIHLIKPLEYRC---LLLVFTLQEKILRDEITELRQKGNHMHQENVE 91
           C + +  EE++   I  ++ LE +    L  V   +++IL  EI ELRQKGN +HQ+NVE
Sbjct: 25  CHRQLMGEELTGLGIKELQNLENQLEMSLKGVRMKKDQILTSEIKELRQKGNLIHQDNVE 84

Query: 92  LYKKLDMIHKENAELQMKVYGPMEVDKTSSSSTQQFTITNRYSMPA---LQLRQPQPQNS 151
           LY+K+D I KENAELQ KVYG     + +++S   F + N Y + A   LQL QPQ Q S
Sbjct: 85  LYQKMDQIQKENAELQKKVYGSRSTGEENAASNPSFMVRNGYDLHAPIGLQLSQPQTQYS 144

Query: 152 ETSVPGIKLGYVL 159
           E+S   +KLG  L
Sbjct: 145 ESSAKVMKLGLQL 157

[Close]

BLAST of CmoCh04G004410 vs. TAIR10
Match: AT2G14210.1 (AT2G14210.1 AGAMOUS-like 44)

HSP 1 Score: 57.8 bits (138), Expect = 7.3e-09
Identity = 44/130 (33.85%), Postives = 67/130 (51.54%), Query Frame = 1


Query: 20  RKQVGNELERCPCRKGINYEEISNRNIHLIKPLEYRCLLLVFTLQEKILRDEITELRQKG 79
           RK VG EL       G+N  ++ N    L+  L+      V   +++++ +EI EL +KG
Sbjct: 109 RKLVGEELS------GMNANDLQNLEDQLVTSLKG-----VRLKKDQLMTNEIRELNRKG 168

Query: 80  NHMHQENVELYKKLDMIHKENAELQMKVYGPMEVDKTSSSSTQQFTITNRYSMPALQLRQ 139
             + +EN EL   +D++ KEN +LQ KV+G     + +SS       T  Y+ P LQL Q
Sbjct: 169 QIIQKENHELQNIVDIMRKENIKLQKKVHGRTNAIEGNSSVDPISNGTTTYAPPQLQLIQ 227

Query: 140 PQPQNSETSV 150
            QP   E S+
Sbjct: 229 LQPAPREKSI 227

[Close]

BLAST of CmoCh04G004410 vs. TAIR10
Match: AT4G37940.1 (AT4G37940.1 AGAMOUS-like 21)

HSP 1 Score: 53.1 bits (126), Expect = 1.8e-07
Identity = 30/87 (34.48%), Postives = 52/87 (59.77%), Query Frame = 1


Query: 64  QEKILRDEITELRQKGNHMHQENVELYKKLDMIHKENAELQMKVYGPMEVDKTSSSSTQQ 123
           +E++L  EI EL QK N +HQEN++L +K+  IH+EN EL  K Y    +  T+  + ++
Sbjct: 141 KEQLLTQEIQELSQKRNLIHQENLDLSRKVQRIHQENVELYKKAY----MANTNGFTHRE 200

Query: 124 FTITNRYSMPALQLRQPQPQNSETSVP 151
             + +  S   ++L+  QP++S+   P
Sbjct: 201 VAVADDESHTQIRLQLSQPEHSDYDTP 223

[Close]

BLAST of CmoCh04G004410 vs. TAIR10
Match: AT2G22630.1 (AT2G22630.1 AGAMOUS-like 17)

HSP 1 Score: 51.6 bits (122), Expect = 5.2e-07
Identity = 31/85 (36.47%), Postives = 47/85 (55.29%), Query Frame = 1


Query: 64  QEKILRDEITELRQKGNHMHQENVELYKKLDMIHKENAELQMKVYGPMEVDKTSSSSTQQ 123
           +E+IL +EI EL +K N +H EN+EL +K+  IH+EN EL  K YG    +         
Sbjct: 141 REQILTNEIKELTRKRNLVHHENLELSRKVQRIHQENVELYKKAYGTSNTNGLGHHELVD 200

Query: 124 FTITNRYSMPALQLRQPQPQNSETS 149
             +   ++   LQL QP+  + +TS
Sbjct: 201 -AVYESHAQVRLQLSQPEQSHYKTS 224

[Close]

BLAST of CmoCh04G004410 vs. TAIR10
Match: AT3G57230.1 (AT3G57230.1 AGAMOUS-like 16)

HSP 1 Score: 50.1 bits (118), Expect = 1.5e-06
Identity = 42/128 (32.81%), Postives = 71/128 (55.47%), Query Frame = 1


Query: 39  EEISNRNIHLIKPLEYRCLLL---VFTLQEKILRDEITELRQKGNHMHQENVELYKKLDM 98
           EE+S  ++  ++ LE +  L    V   ++++L +EI  L ++GN +HQEN++L+KK+++
Sbjct: 113 EELSGLSVEALQNLENQLELSLRGVRMKKDQMLIEEIQVLNREGNLVHQENLDLHKKVNL 172

Query: 99  IHKENAELQMKVYGPMEVDKTSSSSTQQFTITNRYSM-------PALQLRQPQPQNSETS 157
           +H++N EL  KV    EV+    ++     +TN   M         LQL QPQ  + ET 
Sbjct: 173 MHQQNMELHEKV---SEVEGVKIANKNSL-LTNGLDMRDTSNEHVHLQLSQPQ-HDHETH 232

[Close]

BLAST of CmoCh04G004410 vs. NCBI nr
Match: gi|659108914|ref|XP_008454453.1| (PREDICTED: MADS-box transcription factor 23 isoform X2 [Cucumis melo])

HSP 1 Score: 172.6 bits (436), Expect = 5.7e-40
Identity = 94/132 (71.21%), Postives = 107/132 (81.06%), Query Frame = 1


Query: 32  CRKGINYEEISNRNIHLIKPLEYRC---LLLVFTLQEKILRDEITELRQKGNHMHQENVE 91
           C + +  EE+S  ++  ++ LE +    L  V   +EKIL DEITEL+QKGNHMHQENVE
Sbjct: 106 CHRQLMGEELSGLSVKDLQNLESQLEMSLKGVRVKKEKILSDEITELKQKGNHMHQENVE 165

Query: 92  LYKKLDMIHKENAELQMKVYGPMEVDKTSSSSTQQFTITNRYSMPALQLRQPQPQNSETS 151
           LYKKLD+I KENAELQMK YGPME+DKTSSSS QQFTITNRYSMP LQLRQPQPQN ETS
Sbjct: 166 LYKKLDLIRKENAELQMKAYGPMEIDKTSSSS-QQFTITNRYSMPGLQLRQPQPQNHETS 225

Query: 152 VPGIKLGYVLVI 161
           +PGIKLGYVLVI
Sbjct: 226 IPGIKLGYVLVI 236

[Close]

BLAST of CmoCh04G004410 vs. NCBI nr
Match: gi|659108911|ref|XP_008454452.1| (PREDICTED: MADS-box transcription factor 23 isoform X1 [Cucumis melo])

HSP 1 Score: 167.5 bits (423), Expect = 1.8e-38
Identity = 94/134 (70.15%), Postives = 107/134 (79.85%), Query Frame = 1


Query: 32  CRKGINYEEISNRNIHLIKPLEYRC---LLLVFTLQEKILRDEITELRQKGNHMHQENVE 91
           C + +  EE+S  ++  ++ LE +    L  V   +EKIL DEITEL+QKGNHMHQENVE
Sbjct: 106 CHRQLMGEELSGLSVKDLQNLESQLEMSLKGVRVKKEKILSDEITELKQKGNHMHQENVE 165

Query: 92  LYKKLDMIHKENAELQMK--VYGPMEVDKTSSSSTQQFTITNRYSMPALQLRQPQPQNSE 151
           LYKKLD+I KENAELQMK   YGPME+DKTSSSS QQFTITNRYSMP LQLRQPQPQN E
Sbjct: 166 LYKKLDLIRKENAELQMKYQAYGPMEIDKTSSSS-QQFTITNRYSMPGLQLRQPQPQNHE 225

Query: 152 TSVPGIKLGYVLVI 161
           TS+PGIKLGYVLVI
Sbjct: 226 TSIPGIKLGYVLVI 238

[Close]

BLAST of CmoCh04G004410 vs. NCBI nr
Match: gi|449459616|ref|XP_004147542.1| (PREDICTED: MADS-box transcription factor 23 isoform X2 [Cucumis sativus])

HSP 1 Score: 161.8 bits (408), Expect = 1.0e-36
Identity = 91/132 (68.94%), Postives = 104/132 (78.79%), Query Frame = 1


Query: 32  CRKGINYEEISNRNIHLIKPLEYRC---LLLVFTLQEKILRDEITELRQKGNHMHQENVE 91
           C + +  EE+S  ++  ++ LE +    L  V   +EK L DEITEL+QKGNHMHQENVE
Sbjct: 106 CHRQLMGEELSGLSVKDLQNLESQLEMSLKGVRVKKEKTLSDEITELKQKGNHMHQENVE 165

Query: 92  LYKKLDMIHKENAELQMKVYGPMEVDKTSSSSTQQFTITNRYSMPALQLRQPQPQNSETS 151
           LYK+LDM  KENAELQMK YGPME+DKTSSSS QQFTITNRYSMPALQLRQPQPQN+ET 
Sbjct: 166 LYKRLDMTRKENAELQMKAYGPMEIDKTSSSS-QQFTITNRYSMPALQLRQPQPQNNET- 225

Query: 152 VPGIKLGYVLVI 161
            PGIKLGYVL I
Sbjct: 226 -PGIKLGYVLAI 234

[Close]

BLAST of CmoCh04G004410 vs. NCBI nr
Match: gi|659108916|ref|XP_008454454.1| (PREDICTED: MADS-box transcription factor 23 isoform X3 [Cucumis melo])

HSP 1 Score: 159.5 bits (402), Expect = 5.0e-36
Identity = 90/132 (68.18%), Postives = 103/132 (78.03%), Query Frame = 1


Query: 32  CRKGINYEEISNRNIHLIKPLEYRC---LLLVFTLQEKILRDEITELRQKGNHMHQENVE 91
           C + +  EE+S  ++  ++ LE +    L  V   +EKIL DEITEL+QKGNHMHQENVE
Sbjct: 106 CHRQLMGEELSGLSVKDLQNLESQLEMSLKGVRVKKEKILSDEITELKQKGNHMHQENVE 165

Query: 92  LYKKLDMIHKENAELQMK--VYGPMEVDKTSSSSTQQFTITNRYSMPALQLRQPQPQNSE 151
           LYKKLD+I KENAELQMK   YGPME+DKTSSSS QQFTITNRYSMP LQLRQPQPQN E
Sbjct: 166 LYKKLDLIRKENAELQMKYQAYGPMEIDKTSSSS-QQFTITNRYSMPGLQLRQPQPQNHE 225

Query: 152 TSVPGIKLGYVL 159
           TS+PGIKLG  L
Sbjct: 226 TSIPGIKLGLQL 236

[Close]

BLAST of CmoCh04G004410 vs. NCBI nr
Match: gi|778692345|ref|XP_011653446.1| (PREDICTED: MADS-box transcription factor 23 isoform X1 [Cucumis sativus])

HSP 1 Score: 156.8 bits (395), Expect = 3.3e-35
Identity = 91/134 (67.91%), Postives = 104/134 (77.61%), Query Frame = 1


Query: 32  CRKGINYEEISNRNIHLIKPLEYRC---LLLVFTLQEKILRDEITELRQKGNHMHQENVE 91
           C + +  EE+S  ++  ++ LE +    L  V   +EK L DEITEL+QKGNHMHQENVE
Sbjct: 106 CHRQLMGEELSGLSVKDLQNLESQLEMSLKGVRVKKEKTLSDEITELKQKGNHMHQENVE 165

Query: 92  LYKKLDMIHKENAELQMK--VYGPMEVDKTSSSSTQQFTITNRYSMPALQLRQPQPQNSE 151
           LYK+LDM  KENAELQMK   YGPME+DKTSSSS QQFTITNRYSMPALQLRQPQPQN+E
Sbjct: 166 LYKRLDMTRKENAELQMKYQAYGPMEIDKTSSSS-QQFTITNRYSMPALQLRQPQPQNNE 225

Query: 152 TSVPGIKLGYVLVI 161
           T  PGIKLGYVL I
Sbjct: 226 T--PGIKLGYVLAI 236

The following BLAST results are available for this feature:

BLAST of CmoCh04G004410 vs. Swiss-Prot


Match Name	E-value	Identity	Description
MAD27_ORYSJ	2.8e-10	37.72	MADS-box transcription factor 27 OS=Oryza sativa subsp. japonica GN=MADS27 PE=2 ...	[more]
ANR1_ARATH	1.3e-07	33.85	MADS-box transcription factor ANR1 OS=Arabidopsis thaliana GN=ANR1 PE=1 SV=1	[more]
AGL21_ARATH	3.2e-06	34.48	Agamous-like MADS-box protein AGL21 OS=Arabidopsis thaliana GN=AGL21 PE=1 SV=1	[more]
AGL17_ARATH	9.2e-06	36.47	Agamous-like MADS-box protein AGL17 OS=Arabidopsis thaliana GN=AGL17 PE=2 SV=2	[more]

BLAST of CmoCh04G004410 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KZU2_CUCSA	6.6e-35	67.69	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G181200 PE=4 SV=1	[more]
A0A151R2Y1_CAJCA	9.6e-18	45.86	MADS-box transcription factor 27 OS=Cajanus cajan GN=KK1_041884 PE=4 SV=1	[more]
K7M9V8_SOYBN	4.7e-17	45.11	Uncharacterized protein OS=Glycine max PE=4 SV=1	[more]
A0A0R0G677_SOYBN	4.7e-17	45.11	Uncharacterized protein OS=Glycine max GN=GLYMA_15G059600 PE=4 SV=1	[more]
V7BTG6_PHAVU	3.1e-16	44.36	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_006G200300g PE=4 SV=1	[more]

BLAST of CmoCh04G004410 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G14210.1	7.3e-09	33.85	AGAMOUS-like 44	[more]
AT4G37940.1	1.8e-07	34.48	AGAMOUS-like 21	[more]
AT2G22630.1	5.2e-07	36.47	AGAMOUS-like 17	[more]
AT3G57230.1	1.5e-06	32.81	AGAMOUS-like 16	[more]

BLAST of CmoCh04G004410 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659108914\|ref\|XP_008454453.1\|	5.7e-40	71.21	PREDICTED: MADS-box transcription factor 23 isoform X2 [Cucumis melo]	[more]
gi\|659108911\|ref\|XP_008454452.1\|	1.8e-38	70.15	PREDICTED: MADS-box transcription factor 23 isoform X1 [Cucumis melo]	[more]
gi\|449459616\|ref\|XP_004147542.1\|	1.0e-36	68.94	PREDICTED: MADS-box transcription factor 23 isoform X2 [Cucumis sativus]	[more]
gi\|659108916\|ref\|XP_008454454.1\|	5.0e-36	68.18	PREDICTED: MADS-box transcription factor 23 isoform X3 [Cucumis melo]	[more]
gi\|778692345\|ref\|XP_011653446.1\|	3.3e-35	67.91	PREDICTED: MADS-box transcription factor 23 isoform X1 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009653	anatomical structure morphogenesis
biological_process	GO:0048513	animal organ development
biological_process	GO:0044085	cellular component biogenesis
biological_process	GO:0048869	cellular developmental process
biological_process	GO:0044036	cell wall macromolecule metabolic process
biological_process	GO:0033043	regulation of organelle organization
biological_process	GO:0009888	tissue development
biological_process	GO:0006351	transcription, DNA-templated
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005667	transcription factor complex
molecular_function	GO:0005488	binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G004410.1	CmoCh04G004410.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11945	MADS BOX PROTEIN	coord: 65..158 score: 1.6
None	No IPR available	PANTHER	PTHR11945:SF184	SUBFAMILY NOT NAMED	coord: 65..158 score: 1.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh04G004410	Cucsa.331900	Cucumber (Gy14) v1	cgycmoB0910
CmoCh04G004410	CmaCh04G004090	Cucurbita maxima (Rimu)	cmacmoB728
CmoCh04G004410	Csa4G181200	Cucumber (Chinese Long) v2	cmocuB707
CmoCh04G004410	CSPI04G11770	Wild cucumber (PI 183967)	cmocpiB716
CmoCh04G004410	Lsi03G009820	Bottle gourd (USVL1VR-Ls)	cmolsiB646
CmoCh04G004410	Cp4.1LG14g04940	Cucurbita pepo (Zucchini)	cmocpeB668

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh04G004410	Cucurbita pepo (Zucchini)	cmocpeB672
CmoCh04G004410	Cucurbita pepo (Zucchini)	cmocpeB673
CmoCh04G004410	Cucurbita pepo (Zucchini)	cmocpeB703
CmoCh04G004410	Cucumber (Gy14) v2	cgybcmoB526
CmoCh04G004410	Cucumber (Gy14) v2	cgybcmoB948
CmoCh04G004410	Melon (DHL92) v3.6.1	cmomedB751
CmoCh04G004410	Melon (DHL92) v3.6.1	cmomedB782
CmoCh04G004410	Melon (DHL92) v3.6.1	cmomedB786
CmoCh04G004410	Silver-seed gourd	carcmoB0403
CmoCh04G004410	Silver-seed gourd	carcmoB0514
CmoCh04G004410	Silver-seed gourd	carcmoB0999
CmoCh04G004410	Cucumber (Chinese Long) v3	cmocucB0836
CmoCh04G004410	Cucumber (Chinese Long) v3	cmocucB0910
CmoCh04G004410	Watermelon (97103) v2	cmowmbB684
CmoCh04G004410	Watermelon (97103) v2	cmowmbB696
CmoCh04G004410	Watermelon (97103) v2	cmowmbB771
CmoCh04G004410	Wax gourd	cmowgoB0810
CmoCh04G004410	Cucurbita moschata (Rifu)	cmocmoB125
CmoCh04G004410	Cucurbita moschata (Rifu)	cmocmoB286
CmoCh04G004410	Cucurbita moschata (Rifu)	cmocmoB395
CmoCh04G004410	Cucumber (Gy14) v1	cgycmoB0632
CmoCh04G004410	Cucurbita maxima (Rimu)	cmacmoB156
CmoCh04G004410	Cucurbita maxima (Rimu)	cmacmoB338
CmoCh04G004410	Cucurbita maxima (Rimu)	cmacmoB530
CmoCh04G004410	Wild cucumber (PI 183967)	cmocpiB777
CmoCh04G004410	Cucumber (Chinese Long) v2	cmocuB770
CmoCh04G004410	Melon (DHL92) v3.5.1	cmomeB665
CmoCh04G004410	Melon (DHL92) v3.5.1	cmomeB689
CmoCh04G004410	Melon (DHL92) v3.5.1	cmomeB692
CmoCh04G004410	Watermelon (Charleston Gray)	cmowcgB607
CmoCh04G004410	Watermelon (Charleston Gray)	cmowcgB610
CmoCh04G004410	Watermelon (97103) v1	cmowmB648