CmoCh04G003690.1 (mRNA) Cucurbita moschata (Rifu)
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATATATTGCGCTTGCCCGAAGAAAAAACCCTAGCTCGATAACCAGACTTTTATACCTCAATTTTCTCTAACCTCATTCGTCTTCTCCGCCGAGCTCTGCAGAAATGGGTACGTACCTCTGCATCATCTCATTGTTATCCTTTACTCTAGATGTATTTCATAACTTCCTGCATTTTCATTCTCTAGCACAATTCATTCAGGTTTGTGTGTTGTCACTGGTTTTTGCTGAAGGTTTTGTGAAGTTTCTAGATCACTTCCTTGTTCCGTTTTCGTTTTTCTAGTTTTTTTTTTTTTTTTTTTTTTTAATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTTTTAATTATTCTTGAAAGTTCGTTATTTAAGTCCTGGTTATGCGTTCGACATTGATTTGGTGTTTTATCAGGTGCTTATAAGTACGTATCCGAGCTATGGAGGAAGAAGCAGTCCGATGTGATGAGGTTTTTGCAAAGAGTGAGATGCTGGGAATATCGCCAGCACCCTTCAATCGTTCGTGTTACGCATCCCACTCGCCCGGATAAGGCTCGTCGATTAGGCTACAAGGCCAAACAGGTACATGAATCTCTGCACCTTTGACTCTCTGATACTTGCTTTATTATTGATTCTTGGTTTGAACTTCATGACATCTTCAAAATTTTAGAAGTAATGAGAAAGACATTGAGTTTTGTTTACTTTTGCTGTCCGCATTTCCTGAGTTAATTTCTTCATAATTTGTTTACATGTAGAAGTTGAATGTGATTCACATTCGACCCTTCTATGGTTTATGCGTCACTTGTGCTTTTCTTTATGCCTGACACGGATTACTCTTGATCTTTTCTTTAAAAAAATCGTGCGCATTGATTAAAAATAAATGTTATAAAATTGTTGCTTCACAATGTTTTTTAATGTTAATCGGGTGGAACGATTTGGTTCCCTAGGAAAAGAACAATGTTAGAACTGCATTGAGAAAATACTGTATCCTATCCACTCTTCTCTTCGGGAAGTTTCTATTTGATGAATGGTTCAAGTAGAAATAAGGGGAAAGTAGGATTTTTTTTTGCAATTGCTCGATTAATTACATTTGGTTAGAAGTAGTTTTGATATTTGTTTTGCATGAGAGAACGACTTATGTGCTTTTACTCTTACACGTAAAAACATAGATATGGAATATGTAAAACATGGATATTCACCATTTGAATCCTCATGGGTGACATAGTGCAATCATTTCATCATATTTGTCAACAAATTAGAAATCAATTTTTTTCTCATCTGTCTACTATTATGCATTTTCTTATTTTAGCAACAATTTTGTAGGGTTATGTTGTATACCGTGTACGTGTGAGGCGTGGTGGAAGGAAGAGGCCTGTTCCCAAGGGTATTGTATATGGTAAGCCAACAAACCAGGGTGTTACCCAGCTGAAGTTCCAACGCAGCAAGCGTTCAGTTGCCGAGGAACGTGCTGGCCGTAAGTTGGGTGGTCTTAGAGTTCTCAACTCCTACTGGATTAATGAGGTAACAAGCGATTATTATTAAGATGAAATAAAATGGACTTGACATTGACATGCACTTATTCCTCTTTTGGAACCAAACAAAGCCGATGTTTAGGAGAGTTGCATCTTAACCTTCCCATGTACAGTTTGCTAGAGTGTCTCTCATAATTTTCTCTTCATTACTGCAGGATTCAACATACAAATACTTTGAAGTGATCTTGGTTGATGTGGCTCACAATGCTGTTCGCAATGATCCAAGAATAAACTGGATCTGCAATCCTGTTCACAAGCACAGGGAACTTCGTGGTCTCACATCTGCTGGGAAGAAGTACAGAGGTCTTCGTGGAAAGGGTCATCTTCACCACAAGGCAAGACCTTCACGAAGGGCTACATGGAAAAGAAACAACACGCTCTCTCTTCGCCGCTACCGTTAATCTCAGCAACCTCATTAGATTACATCTCATCCTTGTATTTTGTCAAAAAAAAGAAACTTCCGTTCATCCAAGTTTTTGTTTAAATTTACTGTTAGCCAAACTGGGTTTTTCAAGTGTTTCATGCGGATGCATTTTTAGTTCTTTTCTTGAGAAAAACTTGAGTTCTTATTTTCACTGCAAGACTCTTGTTCATCATTTATTCTCTCCAAGCTTGAGTTTTTCCTCCAAAAATGCCAATGTCTGTTACTGATTAGGGAATTCAAGAACATTAGAGAATTCCAACTCATCCAGAAACCACTTCTTGAGCTTCTGAATTGTTCTTGTTAACAGCCATTGTGCAGGAGATTGAAATTTATCATCAACG ATATATTGCGCTTGCCCGAAGAAAAAACCCTAGCTCGATAACCAGACTTTTATACCTCAATTTTCTCTAACCTCATTCGTCTTCTCCGCCGAGCTCTGCAGAAATGGGTGCTTATAAGTACGTATCCGAGCTATGGAGGAAGAAGCAGTCCGATGTGATGAGGTTTTTGCAAAGAGTGAGATGCTGGGAATATCGCCAGCACCCTTCAATCGTTCGTGTTACGCATCCCACTCGCCCGGATAAGGCTCGTCGATTAGGCTACAAGGCCAAACAGGGTTATGTTGTATACCGTGTACGTGTGAGGCGTGGTGGAAGGAAGAGGCCTGTTCCCAAGGGTATTGTATATGGTAAGCCAACAAACCAGGGTGTTACCCAGCTGAAGTTCCAACGCAGCAAGCGTTCAGTTGCCGAGGAACGTGCTGGCCGTAAGTTGGGTGGTCTTAGAGTTCTCAACTCCTACTGGATTAATGAGGATTCAACATACAAATACTTTGAAGTGATCTTGGTTGATGTGGCTCACAATGCTGTTCGCAATGATCCAAGAATAAACTGGATCTGCAATCCTGTTCACAAGCACAGGGAACTTCGTGGTCTCACATCTGCTGGGAAGAAGTACAGAGGTCTTCGTGGAAAGGGTCATCTTCACCACAAGGCAAGACCTTCACGAAGGGCTACATGGAAAAGAAACAACACGCTCTCTCTTCGCCGCTACCGTTAATCTCAGCAACCTCATTAGATTACATCTCATCCTTGTATTTTGTCAAAAAAAAGAAACTTCCGTTCATCCAAGTTTTTGTTTAAATTTACTGTTAGCCAAACTGGGTTTTTCAAGTGTTTCATGCGGATGCATTTTTAGTTCTTTTCTTGAGAAAAACTTGAGTTCTTATTTTCACTGCAAGACTCTTGTTCATCATTTATTCTCTCCAAGCTTGAGTTTTTCCTCCAAAAATGCCAATGTCTGTTACTGATTAGGGAATTCAAGAACATTAGAGAATTCCAACTCATCCAGAAACCACTTCTTGAGCTTCTGAATTGTTCTTGTTAACAGCCATTGTGCAGGAGATTGAAATTTATCATCAACG ATGGGTGCTTATAAGTACGTATCCGAGCTATGGAGGAAGAAGCAGTCCGATGTGATGAGGTTTTTGCAAAGAGTGAGATGCTGGGAATATCGCCAGCACCCTTCAATCGTTCGTGTTACGCATCCCACTCGCCCGGATAAGGCTCGTCGATTAGGCTACAAGGCCAAACAGGGTTATGTTGTATACCGTGTACGTGTGAGGCGTGGTGGAAGGAAGAGGCCTGTTCCCAAGGGTATTGTATATGGTAAGCCAACAAACCAGGGTGTTACCCAGCTGAAGTTCCAACGCAGCAAGCGTTCAGTTGCCGAGGAACGTGCTGGCCGTAAGTTGGGTGGTCTTAGAGTTCTCAACTCCTACTGGATTAATGAGGATTCAACATACAAATACTTTGAAGTGATCTTGGTTGATGTGGCTCACAATGCTGTTCGCAATGATCCAAGAATAAACTGGATCTGCAATCCTGTTCACAAGCACAGGGAACTTCGTGGTCTCACATCTGCTGGGAAGAAGTACAGAGGTCTTCGTGGAAAGGGTCATCTTCACCACAAGGCAAGACCTTCACGAAGGGCTACATGGAAAAGAAACAACACGCTCTCTCTTCGCCGCTACCGTTAA
BLAST of CmoCh04G003690.1 vs. Swiss-Prot
Match: RL15_PETHY (60S ribosomal protein L15 OS=Petunia hybrida GN=RPL15 PE=2 SV=1) HSP 1 Score: 389.0 bits (998), Expect = 3.1e-107 Identity = 190/204 (93.14%), Postives = 195/204 (95.59%), Query Frame = 1
BLAST of CmoCh04G003690.1 vs. Swiss-Prot
Match: RL15B_PICMA (60S ribosomal protein L15-2 OS=Picea mariana GN=SB62 PE=2 SV=1) HSP 1 Score: 388.7 bits (997), Expect = 4.1e-107 Identity = 184/204 (90.20%), Postives = 195/204 (95.59%), Query Frame = 1
BLAST of CmoCh04G003690.1 vs. Swiss-Prot
Match: RL151_ARATH (60S ribosomal protein L15-1 OS=Arabidopsis thaliana GN=RPL15A PE=2 SV=1) HSP 1 Score: 387.9 bits (995), Expect = 6.9e-107 Identity = 187/204 (91.67%), Postives = 196/204 (96.08%), Query Frame = 1
BLAST of CmoCh04G003690.1 vs. Swiss-Prot
Match: RL152_ARATH (60S ribosomal protein L15-2 OS=Arabidopsis thaliana GN=RPL15B PE=2 SV=1) HSP 1 Score: 387.1 bits (993), Expect = 1.2e-106 Identity = 186/204 (91.18%), Postives = 196/204 (96.08%), Query Frame = 1
BLAST of CmoCh04G003690.1 vs. Swiss-Prot
Match: RL15A_PICMA (60S ribosomal protein L15-1 OS=Picea mariana GN=SB61 PE=2 SV=1) HSP 1 Score: 382.5 bits (981), Expect = 2.9e-105 Identity = 182/204 (89.22%), Postives = 195/204 (95.59%), Query Frame = 1
BLAST of CmoCh04G003690.1 vs. TrEMBL
Match: A0A0A0KU38_CUCSA (Ribosomal protein L15 OS=Cucumis sativus GN=Csa_3G112770 PE=3 SV=1) HSP 1 Score: 416.0 bits (1068), Expect = 2.6e-113 Identity = 201/204 (98.53%), Postives = 203/204 (99.51%), Query Frame = 1
BLAST of CmoCh04G003690.1 vs. TrEMBL
Match: A9PAV0_POPTR (Ribosomal protein L15 OS=Populus trichocarpa GN=POPTR_0003s07630g PE=2 SV=1) HSP 1 Score: 416.0 bits (1068), Expect = 2.6e-113 Identity = 200/204 (98.04%), Postives = 203/204 (99.51%), Query Frame = 1
BLAST of CmoCh04G003690.1 vs. TrEMBL
Match: A9PC51_POPTR (Ribosomal protein L15 OS=Populus trichocarpa GN=POPTR_0001s15590g PE=2 SV=1) HSP 1 Score: 415.6 bits (1067), Expect = 3.5e-113 Identity = 199/204 (97.55%), Postives = 203/204 (99.51%), Query Frame = 1
BLAST of CmoCh04G003690.1 vs. TrEMBL
Match: A0A0D2PUM3_GOSRA (Ribosomal protein L15 OS=Gossypium raimondii GN=B456_001G049600 PE=3 SV=1) HSP 1 Score: 414.5 bits (1064), Expect = 7.7e-113 Identity = 200/204 (98.04%), Postives = 202/204 (99.02%), Query Frame = 1
BLAST of CmoCh04G003690.1 vs. TrEMBL
Match: A0A0B0PCZ3_GOSAR (Ribosomal protein L15 OS=Gossypium arboreum GN=F383_08565 PE=3 SV=1) HSP 1 Score: 414.5 bits (1064), Expect = 7.7e-113 Identity = 200/204 (98.04%), Postives = 202/204 (99.02%), Query Frame = 1
BLAST of CmoCh04G003690.1 vs. TAIR10
Match: AT4G16720.1 (AT4G16720.1 Ribosomal protein L23/L15e family protein) HSP 1 Score: 387.9 bits (995), Expect = 3.9e-108 Identity = 187/204 (91.67%), Postives = 196/204 (96.08%), Query Frame = 1
BLAST of CmoCh04G003690.1 vs. TAIR10
Match: AT4G17390.1 (AT4G17390.1 Ribosomal protein L23/L15e family protein) HSP 1 Score: 387.1 bits (993), Expect = 6.7e-108 Identity = 186/204 (91.18%), Postives = 196/204 (96.08%), Query Frame = 1
BLAST of CmoCh04G003690.1 vs. NCBI nr
Match: gi|449458361|ref|XP_004146916.1| (PREDICTED: 60S ribosomal protein L15-1 [Cucumis sativus]) HSP 1 Score: 416.0 bits (1068), Expect = 3.8e-113 Identity = 201/204 (98.53%), Postives = 203/204 (99.51%), Query Frame = 1
BLAST of CmoCh04G003690.1 vs. NCBI nr
Match: gi|566161423|ref|XP_002304285.2| (60S ribosomal protein L15 [Populus trichocarpa]) HSP 1 Score: 416.0 bits (1068), Expect = 3.8e-113 Identity = 200/204 (98.04%), Postives = 203/204 (99.51%), Query Frame = 1
BLAST of CmoCh04G003690.1 vs. NCBI nr
Match: gi|566149188|ref|XP_006369001.1| (60S ribosomal protein L15 [Populus trichocarpa]) HSP 1 Score: 415.6 bits (1067), Expect = 5.0e-113 Identity = 199/204 (97.55%), Postives = 203/204 (99.51%), Query Frame = 1
BLAST of CmoCh04G003690.1 vs. NCBI nr
Match: gi|743864397|ref|XP_011031909.1| (PREDICTED: 60S ribosomal protein L15 isoform X1 [Populus euphratica]) HSP 1 Score: 414.5 bits (1064), Expect = 1.1e-112 Identity = 199/204 (97.55%), Postives = 203/204 (99.51%), Query Frame = 1
BLAST of CmoCh04G003690.1 vs. NCBI nr
Match: gi|823121420|ref|XP_012466674.1| (PREDICTED: 60S ribosomal protein L15-1-like [Gossypium raimondii]) HSP 1 Score: 414.5 bits (1064), Expect = 1.1e-112 Identity = 200/204 (98.04%), Postives = 202/204 (99.02%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
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