CmoCh04G001960.1 (mRNA) Cucurbita moschata (Rifu)

Overview
NameCmoCh04G001960.1
TypemRNA
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionRegulator of chromosome condensation (RCC1) family protein
LocationCmo_Chr04 : 976803 .. 978746 (+)
Sequence length705
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTCTATTCATTAATTTCTTTTTCTGTTCTTTTTCACTTATTACCTAATAGCCATGCCTCTTTCATTTGCACGTTAAATAGTTTGATCCTTTGTACAACCCAACATCAGCTGGAGTTTAATATTTTGACAATTGATCAATCTTCAGAATCCATCTGTAGGTAAAGTAGAAAATGGTGGAGAAAAAGATACGTAGATGTAGATCAAGATCAAGTTCAATTGAAAAGAGATAATTCTTTCTGTTCCTTTTCCTGGACTTTATCTCTACTTCTTGTGCTGCTGCTATATTTTTGGCTTAATTTATGTCTTACAGTGTGGGCAAGGGTGTACAGATGATGAGTTAAGTCCAACATGTGTATCCTCGTTACTCGGTATCCGGATCGAGAGTGTCGCTGCTGGACTGTGGCACACAGTCTGTATATCTGCAGATGGTGATATATACTCATTTGGAGGAAATCAGTTTGGGCAGTTAGGAACAGGTGCTGATCAAGCTGAGGTATGCTTTAGTAACCGCTTCAACTTGTCAGATCATGCCAGCAGGCATCCTCGATCAGATTTCTATGATAGTATGCATTCTAAAGCAGAACAAAGTAATTTATGGCTATGTCTTATTTTGTTTCCAACCATTTATTCAGACACTTCCAAGACTTCTAGATGCAGCAAGTGTGGAAAATGTAAACGCAAAGGTTGTATCTTGTGGGGCTCGTCATAGTGCTATAGTAACAGGTACTTCATTGTTTACTTGGTACTATTCTATGTGCTTTTTGATTCATAAGACCCAGTCTTTAATTTACTGGGATGAAAAAGTTCAAATTTCTGAACTTTAAATTAGAAGTGAGAAATTATAAACAATAATGGTACAGAAGTCCAAAGCATGGGTGCTTCCGGTGGGAATTCACAAAACTTTAGGCACAGGCTAAAACTAAAAGCTAGTCATCACTGAGATTATTTGTGAGATTCCACATCGTTTGGTGAGGGGAACAAAGCATTCTTTATAAGGGTGTTGGAAACCACTCCCTAGCAGTCGCGTTTTAAAACCTTGAGGGGAAGCTCAAAAGGGAAAGCCCAAAGAGACAATATGTGCTAGCGGTGGATTTGGGCTGTTTCAGATGGTATCAGAGCCAGACACTGGGTGGCAGTATGTCAGCGAGGATACTACGCCCTCAAGGGGGGTGAATTGTGAGATCCCATGTCAGTTGGAGAGGGAAATTGAAAACTTCTCCCTTACATGCGCATTTTAAAATCTTGAAGGGAAACTCGAAAGGGAAAGTTCAAAGAGGACAATATTTGCCAGCGGTGGACTTGGGTTATTTGGGCTTGAAGTGTTGTTACATTATTTCTTGGGGAGAGAGAGACATTTTATGTTGGGAACTTCATAGAAGATCTAGTTGATCTGTGTTTTTTTTCTTCTTTTAAACCTCTTGGTTCTGAAGAAATTGTGTCTGTTTAGAAGACATCTAGTAGAACGAAAGGAAAAAAGGAGGAAGATATACCTGTTTAAGTCGAATTGTCACCAAGAACTTCTAAAGAACTATGTTATAACTGAACTTCTCTAAACTTTATGCATTATATTTGAAGAATTTGGATTGTTGGATACTCATTTTTGTGATATTCATTCTAACGTCTTCTTTCTCCAATTTCTAGACAATGGGAAAGTGTTCTGCTGGGGTTGGAACAAATATGGCCAGGTATGTTGGTTTGATTCCTTGTTTTCTTGTTCCTTAAAAATACTGTCACAAATATTCTGCAGTTTTTCATGTCCTCTTCATAAATGCATGTTTATAAGTTGTTTTCTTAGAAGTTTCCATTTACACACTGCAGTTGGGTTTGGGTGATGTAATCGACCGTAATATCCCTGTTGAAGTCCCGATCGAAAATTGCACTCCTACGAACGTTGCCTGTGGATGGTGGCACACCCTGCTTTTGGCCGAATCACCCACCTGA

mRNA sequence

ATGTTCTATTCATTAATTTCTTTTTCTGTTCTTTTTCACTTATTACCTAATAGCCATGCCTCTTTCATTTGCACGTTAAATAGTTTGATCCTTTGTACAACCCAACATCAGCTGGAGTTTAATATTTTGACAATTGATCAATCTTCAGAATCCATCTGTAGAAAATGGTGGAGAAAAAGATACGTAGATGTAGATCAAGATCAAGTTCAATTGAAAAGAGATAATTCTTTCTGTTCCTTTTCCTGGACTTTATCTCTACTTCTTTGTGGGCAAGGGTGTACAGATGATGAGTTAAGTCCAACATGTGTATCCTCGTTACTCGGTATCCGGATCGAGAGTGTCGCTGCTGGACTGTGGCACACAGTCTGTATATCTGCAGATGGTGATATATACTCATTTGGAGGAAATCAGTTTGGGCAGTTAGGAACAGGTGCTGATCAAGCTGAGACACTTCCAAGACTTCTAGATGCAGCAAGTGTGGAAAATGTAAACGCAAAGGTTGTATCTTGTGGGGCTCGTCATAGTGCTATAGTAACAGACAATGGGAAAGTGTTCTGCTGGGGTTGGAACAAATATGGCCAGTTGGGTTTGGGTGATGTAATCGACCGTAATATCCCTGTTGAAGTCCCGATCGAAAATTGCACTCCTACGAACGTTGCCTGTGGATGGTGGCACACCCTGCTTTTGGCCGAATCACCCACCTGA

Coding sequence (CDS)

ATGTTCTATTCATTAATTTCTTTTTCTGTTCTTTTTCACTTATTACCTAATAGCCATGCCTCTTTCATTTGCACGTTAAATAGTTTGATCCTTTGTACAACCCAACATCAGCTGGAGTTTAATATTTTGACAATTGATCAATCTTCAGAATCCATCTGTAGAAAATGGTGGAGAAAAAGATACGTAGATGTAGATCAAGATCAAGTTCAATTGAAAAGAGATAATTCTTTCTGTTCCTTTTCCTGGACTTTATCTCTACTTCTTTGTGGGCAAGGGTGTACAGATGATGAGTTAAGTCCAACATGTGTATCCTCGTTACTCGGTATCCGGATCGAGAGTGTCGCTGCTGGACTGTGGCACACAGTCTGTATATCTGCAGATGGTGATATATACTCATTTGGAGGAAATCAGTTTGGGCAGTTAGGAACAGGTGCTGATCAAGCTGAGACACTTCCAAGACTTCTAGATGCAGCAAGTGTGGAAAATGTAAACGCAAAGGTTGTATCTTGTGGGGCTCGTCATAGTGCTATAGTAACAGACAATGGGAAAGTGTTCTGCTGGGGTTGGAACAAATATGGCCAGTTGGGTTTGGGTGATGTAATCGACCGTAATATCCCTGTTGAAGTCCCGATCGAAAATTGCACTCCTACGAACGTTGCCTGTGGATGGTGGCACACCCTGCTTTTGGCCGAATCACCCACCTGA
Homology
[Close]
BLAST of CmoCh04G001960.1 vs. Swiss-Prot
Match: UVR8_ARATH (Ultraviolet-B receptor UVR8 OS=Arabidopsis thaliana GN=UVR8 PE=1 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 5.8e-25
Identity = 56/144 (38.89%), Postives = 87/144 (60.42%), Query Frame = 1 

Query: 90  GQGCTDDELSPTCVSSLLGIRIESVAAGLWHTVCISADGDIYSFGGNQFGQLGTGADQAE 149
           G G + D  +P  + +L GIRI+ +A G  H + ++ +G++ S+G NQ GQLG G  +  
Sbjct: 101 GHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDS 160

Query: 150 TLPRLLDAASVENVNAKVVSCGARHSAIVTDNGKVFCWGWNKYGQLGLGDVIDRNIPVEV 209
            +P+ + A   E +  K+V+ GA H+A VT++G ++ WGW +YG LGLGD  DR +P  V
Sbjct: 161 LVPQKIQA--FEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERV 220

Query: 210 PIENCTPTN-VACGWWHTLLLAES 233
                   + VACGW HT+ ++ S
Sbjct: 221 TSTGGEKMSMVACGWRHTISVSYS 242

[Close]
BLAST of CmoCh04G001960.1 vs. Swiss-Prot
Match: RCBT2_RAT (RCC1 and BTB domain-containing protein 2 OS=Rattus norvegicus GN=Rcbtb2 PE=2 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 4.0e-18
Identity = 48/144 (33.33%), Postives = 84/144 (58.33%), Query Frame = 1 

Query: 90  GQGCTDDELSPTCVSSLLGIR-IESVAAGLWHTVCISADGDIYSFGGNQFGQLGTGADQA 149
           G G T+  L P  +S+ L  + +  VA G +H++ +++DG+++++G N  GQ+G+G+   
Sbjct: 132 GNGTTNHGLVPCHISTNLSNKQVIEVACGSYHSLVLTSDGEVFAWGYNNSGQVGSGSTAN 191

Query: 150 ETLPRLLDAASVENVNAKVVSCGARHSAIVTDNGKVFCWGWNKYGQLGLGDVIDRNIPVE 209
           + +PR +    ++N     ++CG   S  V D G+V+ WG+N  GQLGLG   ++  P  
Sbjct: 192 QPIPRRV-TGCLQNKVVMSIACGQMCSMAVVDTGEVYVWGYNGNGQLGLGSSGNQPTPCR 251

Query: 210 V-PIENCTPTNVACGWWHTLLLAE 232
           V  ++      VACG+ HTL+L +
Sbjct: 252 VAALQGIRVQRVACGYAHTLVLTD 274

[Close]
BLAST of CmoCh04G001960.1 vs. Swiss-Prot
Match: HERC5_HUMAN (E3 ISG15--protein ligase HERC5 OS=Homo sapiens GN=HERC5 PE=1 SV=2)

HSP 1 Score: 92.8 bits (229), Expect = 5.3e-18
Identity = 47/130 (36.15%), Postives = 76/130 (58.46%), Query Frame = 1 

Query: 99  SPTCVSSLLGIRIESVAAGLWHTVCISADGDIYSFGGNQFGQLGTGADQAETLPRLLDAA 158
           +P  V  L G+ +  ++AG  H++ +S  G+IYS+G N+ GQLG G  +++  P L++  
Sbjct: 181 TPQIVEHLAGVPLAQISAGEAHSMALSMSGNIYSWGKNECGQLGLGHTESKDDPSLIE-- 240

Query: 159 SVENVNAKVVSCGARHSAIVTDNGKVFCWGWNKYGQLGLGDVIDRNIPVEV-PIENCTPT 218
            ++N   + V+CG  HSA++T +G +F +G  K+GQLG     +   P  V  +     T
Sbjct: 241 GLDNQKVEFVACGGSHSALLTQDGLLFTFGAGKHGQLGHNSTQNELRPCLVAELVGYRVT 300

Query: 219 NVACGWWHTL 228
            +ACG WHTL
Sbjct: 301 QIACGRWHTL 308

[Close]
BLAST of CmoCh04G001960.1 vs. Swiss-Prot
Match: RCBT2_MOUSE (RCC1 and BTB domain-containing protein 2 OS=Mus musculus GN=Rcbtb2 PE=2 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 5.3e-18
Identity = 48/144 (33.33%), Postives = 84/144 (58.33%), Query Frame = 1 

Query: 90  GQGCTDDELSPTCVSSLLGIR-IESVAAGLWHTVCISADGDIYSFGGNQFGQLGTGADQA 149
           G G T+  L P  +S+ L  + +  VA G +H++ +++DG+++++G N  GQ+G+G+   
Sbjct: 132 GNGTTNHGLVPCHISTNLSNKQVIEVACGSYHSLVLTSDGEVFAWGYNNSGQVGSGSTAN 191

Query: 150 ETLPRLLDAASVENVNAKVVSCGARHSAIVTDNGKVFCWGWNKYGQLGLGDVIDRNIPVE 209
           + +PR +    ++N     ++CG   S  V D G+V+ WG+N  GQLGLG   ++  P  
Sbjct: 192 QPIPRRV-TGCLQNKVVMNIACGQMCSMAVVDTGEVYVWGYNGNGQLGLGSSGNQPTPCR 251

Query: 210 V-PIENCTPTNVACGWWHTLLLAE 232
           V  ++      VACG+ HTL+L +
Sbjct: 252 VAALQGIRVQRVACGYAHTLVLTD 274

[Close]
BLAST of CmoCh04G001960.1 vs. Swiss-Prot
Match: RCCD1_HUMAN (RCC1 domain-containing protein 1 OS=Homo sapiens GN=RCCD1 PE=1 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.2e-17
Identity = 60/182 (32.97%), Postives = 83/182 (45.60%), Query Frame = 1 

Query: 90  GQGCTDDELSPTCVSSLLGIRIESVAAGLWHTVCISADGDIYSFG--------------- 149
           G G  + EL P  + +L G+ +  VAAG WH+VC+S  GDIY +G               
Sbjct: 191 GHGTLEAELEPRLLEALQGLVMAEVAAGGWHSVCVSETGDIYIWGWNESGQLALPTRNLA 250

Query: 150 ----------------GNQFGQLGTGADQA-------ETLPRLLDAASVENVNAKVVSCG 209
                           G+Q  + G   D A       +  P LLD       +A   SCG
Sbjct: 251 EDGETVAREATELNEDGSQVKRTGGAEDGAPAPFIAVQPFPALLDLPM--GSDAVKASCG 310

Query: 210 ARHSAIVTDNGKVFCWGWNKYGQLGLGDV--IDRNIPVEVPIENCTPTN-VACGWWHTLL 231
           +RH+A+VT  G+++ WGW KYGQLG  D   +DR   VE  ++       V CG W+T +
Sbjct: 311 SRHTAVVTRTGELYTWGWGKYGQLGHEDTTSLDRPRRVEYFVDKQLQVKAVTCGPWNTYV 370

[Close]
BLAST of CmoCh04G001960.1 vs. TrEMBL
Match: A0A0A0KLQ7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G184310 PE=4 SV=1)

HSP 1 Score: 299.3 bits (765), Expect = 4.1e-78
Identity = 140/156 (89.74%), Postives = 146/156 (93.59%), Query Frame = 1 

Query: 79  SFSWTLSLLLCGQGCTDDELSPTCVSSLLGIRIESVAAGLWHTVCISADGDIYSFGGNQF 138
           +F W L    CGQGCTDDELSPTCVSSLLGIRIESVAAGLWHTVCIS+DGDIYSFGGNQF
Sbjct: 337 TFGWGL-YGQCGQGCTDDELSPTCVSSLLGIRIESVAAGLWHTVCISSDGDIYSFGGNQF 396

Query: 139 GQLGTGADQAETLPRLLDAASVENVNAKVVSCGARHSAIVTDNGKVFCWGWNKYGQLGLG 198
           GQLGTGADQAETLPRLLDA SVENVNAKVVSCGARHSAIV+++GKVFCWGWNKYGQLGLG
Sbjct: 397 GQLGTGADQAETLPRLLDAPSVENVNAKVVSCGARHSAIVSEDGKVFCWGWNKYGQLGLG 456

Query: 199 DVIDRNIPVEVPIENCTPTNVACGWWHTLLLAESPT 235
           DVIDRNIPVEVP+ENC   NVACGWWHTLLLAESPT
Sbjct: 457 DVIDRNIPVEVPMENCNSKNVACGWWHTLLLAESPT 491

[Close]
BLAST of CmoCh04G001960.1 vs. TrEMBL
Match: A0A0D2VSB4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G268700 PE=4 SV=1)

HSP 1 Score: 284.3 bits (726), Expect = 1.4e-73
Identity = 128/156 (82.05%), Postives = 140/156 (89.74%), Query Frame = 1 

Query: 79  SFSWTLSLLLCGQGCTDDELSPTCVSSLLGIRIESVAAGLWHTVCISADGDIYSFGGNQF 138
           +F W L    CGQG TDDELSPTCVSSLLGIRIESVAAGLWHTVC+S DGD+Y+FGGNQF
Sbjct: 333 TFGWGL-YGQCGQGSTDDELSPTCVSSLLGIRIESVAAGLWHTVCVSTDGDVYAFGGNQF 392

Query: 139 GQLGTGADQAETLPRLLDAASVENVNAKVVSCGARHSAIVTDNGKVFCWGWNKYGQLGLG 198
           GQLGTG DQAETLPRLLDA S+EN N K+VSCGARHSAI+T++GK+FCWGWNKYGQLGLG
Sbjct: 393 GQLGTGGDQAETLPRLLDAPSLENTNVKIVSCGARHSAIITEDGKIFCWGWNKYGQLGLG 452

Query: 199 DVIDRNIPVEVPIENCTPTNVACGWWHTLLLAESPT 235
           DVIDRNIP EV IE C+P N+ACGWWHTLLLAESPT
Sbjct: 453 DVIDRNIPSEVTIEGCSPKNIACGWWHTLLLAESPT 487

[Close]
BLAST of CmoCh04G001960.1 vs. TrEMBL
Match: A0A0B0PG70_GOSAR (RCC1 domain-containing 1 OS=Gossypium arboreum GN=F383_10353 PE=4 SV=1)

HSP 1 Score: 278.9 bits (712), Expect = 5.8e-72
Identity = 125/156 (80.13%), Postives = 139/156 (89.10%), Query Frame = 1 

Query: 79  SFSWTLSLLLCGQGCTDDELSPTCVSSLLGIRIESVAAGLWHTVCISADGDIYSFGGNQF 138
           +F W L    CGQG TDDELSPTCVS+LLGIRIESVAAGLWHTVC+S DGD+Y+FGGNQF
Sbjct: 267 TFGWGL-YGQCGQGSTDDELSPTCVSALLGIRIESVAAGLWHTVCVSTDGDVYAFGGNQF 326

Query: 139 GQLGTGADQAETLPRLLDAASVENVNAKVVSCGARHSAIVTDNGKVFCWGWNKYGQLGLG 198
           GQLGTG DQAETLPRLLDA S+EN N K+VSCGARHSAI+T++GK+FCWGWNKYGQLGLG
Sbjct: 327 GQLGTGGDQAETLPRLLDAPSLENTNVKIVSCGARHSAIITEDGKIFCWGWNKYGQLGLG 386

Query: 199 DVIDRNIPVEVPIENCTPTNVACGWWHTLLLAESPT 235
           DVIDRNIP +V IE C+P N+ACGWWHTLLLA SPT
Sbjct: 387 DVIDRNIPSQVTIEGCSPKNIACGWWHTLLLALSPT 421

[Close]
BLAST of CmoCh04G001960.1 vs. TrEMBL
Match: A0A061FLA7_THECC (Regulator of chromosome condensation repeat-containing protein isoform 1 OS=Theobroma cacao GN=TCM_042741 PE=4 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 9.9e-72
Identity = 126/156 (80.77%), Postives = 140/156 (89.74%), Query Frame = 1 

Query: 79  SFSWTLSLLLCGQGCTDDELSPTCVSSLLGIRIESVAAGLWHTVCISADGDIYSFGGNQF 138
           +F W L    CGQG TDDELSPTCVSSLLGI IE+VAAGLWHTVCISADGD+Y+FGGNQF
Sbjct: 332 TFGWGL-YGQCGQGSTDDELSPTCVSSLLGITIEAVAAGLWHTVCISADGDVYAFGGNQF 391

Query: 139 GQLGTGADQAETLPRLLDAASVENVNAKVVSCGARHSAIVTDNGKVFCWGWNKYGQLGLG 198
           GQLGTG DQAETLPRLLDA S+EN +AKVVSCGARHSA++T++GKVFCWGWNKYGQLGLG
Sbjct: 392 GQLGTGGDQAETLPRLLDAPSLENTHAKVVSCGARHSAVITEDGKVFCWGWNKYGQLGLG 451

Query: 199 DVIDRNIPVEVPIENCTPTNVACGWWHTLLLAESPT 235
           DVIDRNIP +V I+ C P N+ACGWWHTLLLA+SPT
Sbjct: 452 DVIDRNIPSQVTIDGCGPKNIACGWWHTLLLADSPT 486

[Close]
BLAST of CmoCh04G001960.1 vs. TrEMBL
Match: A0A0J8FRL4_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g025460 PE=4 SV=1)

HSP 1 Score: 277.3 bits (708), Expect = 1.7e-71
Identity = 127/156 (81.41%), Postives = 141/156 (90.38%), Query Frame = 1 

Query: 79  SFSWTLSLLLCGQGCTDDELSPTCVSSLLGIRIESVAAGLWHTVCISADGDIYSFGGNQF 138
           +F W L    CGQG TDD LSPTCVSSLLGIRIESVAAGLWHT+CISADGD+Y+FGGNQF
Sbjct: 329 AFGWGL-YGQCGQGATDDVLSPTCVSSLLGIRIESVAAGLWHTLCISADGDVYAFGGNQF 388

Query: 139 GQLGTGADQAETLPRLLDAASVENVNAKVVSCGARHSAIVTDNGKVFCWGWNKYGQLGLG 198
           GQLGTG+DQAETLPRLL+A SV+NVNA +VSCGARHSAIVT++GKVFCWGWNKYGQLGLG
Sbjct: 389 GQLGTGSDQAETLPRLLEAPSVDNVNATIVSCGARHSAIVTEDGKVFCWGWNKYGQLGLG 448

Query: 199 DVIDRNIPVEVPIENCTPTNVACGWWHTLLLAESPT 235
           DVIDRNIP +V +++C   NVACGWWHTLLLAESPT
Sbjct: 449 DVIDRNIPSQVKLDDCVAKNVACGWWHTLLLAESPT 483

[Close]
BLAST of CmoCh04G001960.1 vs. TAIR10
Match: AT3G55580.1 (AT3G55580.1 Regulator of chromosome condensation (RCC1) family protein)

HSP 1 Score: 261.5 bits (667), Expect = 4.8e-70
Identity = 114/153 (74.51%), Postives = 132/153 (86.27%), Query Frame = 1 

Query: 79  SFSWTLSLLLCGQGCTDDELSPTCVSSLLGIRIESVAAGLWHTVCISADGDIYSFGGNQF 138
           +F W L    CGQG TDDELSPTCVSSLLGIRIE VAAGLWHT C S+DGD+Y+FGGNQF
Sbjct: 334 TFGWGL-YGQCGQGSTDDELSPTCVSSLLGIRIEEVAAGLWHTTCASSDGDVYAFGGNQF 393

Query: 139 GQLGTGADQAETLPRLLDAASVENVNAKVVSCGARHSAIVTDNGKVFCWGWNKYGQLGLG 198
           GQLGTG DQAETLP+LL+A ++ENVN K +SCGARH+A++TD G+VFCWGWNKYGQLG+G
Sbjct: 394 GQLGTGCDQAETLPKLLEAPNLENVNVKTISCGARHTAVITDEGRVFCWGWNKYGQLGIG 453

Query: 199 DVIDRNIPVEVPIENCTPTNVACGWWHTLLLAE 232
           DVIDRN P EV I++C P N+ACGWWHTLLL +
Sbjct: 454 DVIDRNAPAEVRIKDCFPKNIACGWWHTLLLGQ 485

[Close]
BLAST of CmoCh04G001960.1 vs. TAIR10
Match: AT3G53830.1 (AT3G53830.1 Regulator of chromosome condensation (RCC1) family protein)

HSP 1 Score: 224.6 bits (571), Expect = 6.6e-59
Identity = 98/156 (62.82%), Postives = 121/156 (77.56%), Query Frame = 1 

Query: 79  SFSWTLSLLLCGQGCTDDELSPTCVSSLLGIRIESVAAGLWHTVCISADGDIYSFGGNQF 138
           +F W L    CG G T+D+L P  VS +  +R+ESVAAGLWHT+CIS+DG +Y+FGGNQF
Sbjct: 318 TFGWGL-YGQCGHGNTNDQLRPMAVSEVKSVRMESVAAGLWHTICISSDGKVYAFGGNQF 377

Query: 139 GQLGTGADQAETLPRLLDAASVENVNAKVVSCGARHSAIVTDNGKVFCWGWNKYGQLGLG 198
           GQLGTG D AE LPRLLD  ++E  +AK VSCGARHSA++ ++G++ CWGWNKYGQLGLG
Sbjct: 378 GQLGTGTDHAEILPRLLDGQNLEGKHAKAVSCGARHSAVLAEDGQLLCWGWNKYGQLGLG 437

Query: 199 DVIDRNIPVEVPIENCTPTNVACGWWHTLLLAESPT 235
           D  DRNIP +V ++ C    VACGWWHTLLL +SPT
Sbjct: 438 DTNDRNIPTQVQLDGCRLRKVACGWWHTLLLGDSPT 472

[Close]
BLAST of CmoCh04G001960.1 vs. TAIR10
Match: AT5G63860.1 (AT5G63860.1 Regulator of chromosome condensation (RCC1) family protein)

HSP 1 Score: 115.9 bits (289), Expect = 3.3e-26
Identity = 56/144 (38.89%), Postives = 87/144 (60.42%), Query Frame = 1 

Query: 90  GQGCTDDELSPTCVSSLLGIRIESVAAGLWHTVCISADGDIYSFGGNQFGQLGTGADQAE 149
           G G + D  +P  + +L GIRI+ +A G  H + ++ +G++ S+G NQ GQLG G  +  
Sbjct: 101 GHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDS 160

Query: 150 TLPRLLDAASVENVNAKVVSCGARHSAIVTDNGKVFCWGWNKYGQLGLGDVIDRNIPVEV 209
            +P+ + A   E +  K+V+ GA H+A VT++G ++ WGW +YG LGLGD  DR +P  V
Sbjct: 161 LVPQKIQA--FEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERV 220

Query: 210 PIENCTPTN-VACGWWHTLLLAES 233
                   + VACGW HT+ ++ S
Sbjct: 221 TSTGGEKMSMVACGWRHTISVSYS 242

[Close]
BLAST of CmoCh04G001960.1 vs. TAIR10
Match: AT5G08710.1 (AT5G08710.1 Regulator of chromosome condensation (RCC1) family protein)

HSP 1 Score: 92.8 bits (229), Expect = 3.0e-19
Identity = 45/141 (31.91%), Postives = 75/141 (53.19%), Query Frame = 1 

Query: 94  TDDELSPTCVSSLLGIRIESVAAGLWHTVCISADGDIYSFGGNQFGQLGTGADQAETLPR 153
           ++ E +P  +  L GI++ +VAAGL H+ C   +G  + FG     ++G G  +  T P 
Sbjct: 234 SNSEFTPRLIKELEGIKVTNVAAGLLHSACTDENGSAFMFGEKSINKMGFGGVRNATTPS 293

Query: 154 LLDAASVENVNAKVVSCGARHSAIVTDNGKVFCWGWNKYGQLGLGDVIDRNIPVEV--PI 213
           ++     E   A+ V+CG  H+ +VT  G+++ WG N+ G LG       + PV V  P 
Sbjct: 294 IIS----EVPYAEEVACGGYHTCVVTRGGELYTWGSNENGCLGTDSTYVSHSPVRVEGPF 353

Query: 214 ENCTPTNVACGWWHTLLLAES 233
              T + V+CGW HT  ++++
Sbjct: 354 LESTVSQVSCGWKHTAAISDN 370

[Close]
BLAST of CmoCh04G001960.1 vs. TAIR10
Match: AT5G12350.1 (AT5G12350.1 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain)

HSP 1 Score: 90.5 bits (223), Expect = 1.5e-18
Identity = 51/155 (32.90%), Postives = 81/155 (52.26%), Query Frame = 1 

Query: 79  SFSW-TLSLLLCGQGCTDDELSPTCVSSLLGIRIESVAAGLWHTVCISADGDIYSFGGNQ 138
           SFSW   S    G G   +   P  + +L    IE VA G +H+  ++  GD+Y++G   
Sbjct: 329 SFSWGEESEGRLGHGVDSNIQQPKLIDALNTTNIELVACGEFHSCAVTLSGDLYTWGKGD 388

Query: 139 FGQLGTGADQAETLPRLLDAASVENVNAKVVSCGARHSAIVTDNGKVFCWGWNKYGQLGL 198
           FG LG G + +  +P+ ++   +E ++   ++CG  H+A+VT  G++F +G   +G LG 
Sbjct: 389 FGVLGHGNEVSHWVPKRVNFL-LEGIHVSSIACGPYHTAVVTSAGQLFTFGDGTFGVLGH 448

Query: 199 GDVIDRNIPVEV-PIENCTPTNVACGWWHTLLLAE 232
           GD     IP EV  ++       ACG WHT  + E
Sbjct: 449 GDKKSVFIPREVDSLKGLRTVRAACGVWHTAAVVE 482

[Close]
BLAST of CmoCh04G001960.1 vs. NCBI nr
Match: gi|659123524|ref|XP_008461710.1| (PREDICTED: ultraviolet-B receptor UVR8 isoform X2 [Cucumis melo])

HSP 1 Score: 302.8 bits (774), Expect = 5.4e-79
Identity = 141/156 (90.38%), Postives = 148/156 (94.87%), Query Frame = 1 

Query: 79  SFSWTLSLLLCGQGCTDDELSPTCVSSLLGIRIESVAAGLWHTVCISADGDIYSFGGNQF 138
           +F W L    CG+GCTDDELSPTCVSSLLGIRIESVAAGLWHTVCIS+DGDIYSFGGNQF
Sbjct: 332 TFGWGL-YGQCGRGCTDDELSPTCVSSLLGIRIESVAAGLWHTVCISSDGDIYSFGGNQF 391

Query: 139 GQLGTGADQAETLPRLLDAASVENVNAKVVSCGARHSAIVTDNGKVFCWGWNKYGQLGLG 198
           GQLGTGADQAETLPRLLDA SVENVNAKVVSCGARHSAIV+++GKVFCWGWNKYGQLGLG
Sbjct: 392 GQLGTGADQAETLPRLLDAPSVENVNAKVVSCGARHSAIVSEDGKVFCWGWNKYGQLGLG 451

Query: 199 DVIDRNIPVEVPIENCTPTNVACGWWHTLLLAESPT 235
           DVIDRNIPVEVP+ENCTP NVACGWWHTLLLAESPT
Sbjct: 452 DVIDRNIPVEVPMENCTPKNVACGWWHTLLLAESPT 486

[Close]
BLAST of CmoCh04G001960.1 vs. NCBI nr
Match: gi|659123522|ref|XP_008461709.1| (PREDICTED: ultraviolet-B receptor UVR8 isoform X1 [Cucumis melo])

HSP 1 Score: 302.8 bits (774), Expect = 5.4e-79
Identity = 141/156 (90.38%), Postives = 148/156 (94.87%), Query Frame = 1 

Query: 79  SFSWTLSLLLCGQGCTDDELSPTCVSSLLGIRIESVAAGLWHTVCISADGDIYSFGGNQF 138
           +F W L    CG+GCTDDELSPTCVSSLLGIRIESVAAGLWHTVCIS+DGDIYSFGGNQF
Sbjct: 337 TFGWGL-YGQCGRGCTDDELSPTCVSSLLGIRIESVAAGLWHTVCISSDGDIYSFGGNQF 396

Query: 139 GQLGTGADQAETLPRLLDAASVENVNAKVVSCGARHSAIVTDNGKVFCWGWNKYGQLGLG 198
           GQLGTGADQAETLPRLLDA SVENVNAKVVSCGARHSAIV+++GKVFCWGWNKYGQLGLG
Sbjct: 397 GQLGTGADQAETLPRLLDAPSVENVNAKVVSCGARHSAIVSEDGKVFCWGWNKYGQLGLG 456

Query: 199 DVIDRNIPVEVPIENCTPTNVACGWWHTLLLAESPT 235
           DVIDRNIPVEVP+ENCTP NVACGWWHTLLLAESPT
Sbjct: 457 DVIDRNIPVEVPMENCTPKNVACGWWHTLLLAESPT 491

[Close]
BLAST of CmoCh04G001960.1 vs. NCBI nr
Match: gi|449465846|ref|XP_004150638.1| (PREDICTED: ultraviolet-B receptor UVR8 isoform X5 [Cucumis sativus])

HSP 1 Score: 299.3 bits (765), Expect = 5.9e-78
Identity = 140/156 (89.74%), Postives = 146/156 (93.59%), Query Frame = 1 

Query: 79  SFSWTLSLLLCGQGCTDDELSPTCVSSLLGIRIESVAAGLWHTVCISADGDIYSFGGNQF 138
           +F W L    CGQGCTDDELSPTCVSSLLGIRIESVAAGLWHTVCIS+DGDIYSFGGNQF
Sbjct: 337 TFGWGL-YGQCGQGCTDDELSPTCVSSLLGIRIESVAAGLWHTVCISSDGDIYSFGGNQF 396

Query: 139 GQLGTGADQAETLPRLLDAASVENVNAKVVSCGARHSAIVTDNGKVFCWGWNKYGQLGLG 198
           GQLGTGADQAETLPRLLDA SVENVNAKVVSCGARHSAIV+++GKVFCWGWNKYGQLGLG
Sbjct: 397 GQLGTGADQAETLPRLLDAPSVENVNAKVVSCGARHSAIVSEDGKVFCWGWNKYGQLGLG 456

Query: 199 DVIDRNIPVEVPIENCTPTNVACGWWHTLLLAESPT 235
           DVIDRNIPVEVP+ENC   NVACGWWHTLLLAESPT
Sbjct: 457 DVIDRNIPVEVPMENCNSKNVACGWWHTLLLAESPT 491

[Close]
BLAST of CmoCh04G001960.1 vs. NCBI nr
Match: gi|778701104|ref|XP_011654966.1| (PREDICTED: ultraviolet-B receptor UVR8 isoform X4 [Cucumis sativus])

HSP 1 Score: 299.3 bits (765), Expect = 5.9e-78
Identity = 140/156 (89.74%), Postives = 146/156 (93.59%), Query Frame = 1 

Query: 79  SFSWTLSLLLCGQGCTDDELSPTCVSSLLGIRIESVAAGLWHTVCISADGDIYSFGGNQF 138
           +F W L    CGQGCTDDELSPTCVSSLLGIRIESVAAGLWHTVCIS+DGDIYSFGGNQF
Sbjct: 339 TFGWGL-YGQCGQGCTDDELSPTCVSSLLGIRIESVAAGLWHTVCISSDGDIYSFGGNQF 398

Query: 139 GQLGTGADQAETLPRLLDAASVENVNAKVVSCGARHSAIVTDNGKVFCWGWNKYGQLGLG 198
           GQLGTGADQAETLPRLLDA SVENVNAKVVSCGARHSAIV+++GKVFCWGWNKYGQLGLG
Sbjct: 399 GQLGTGADQAETLPRLLDAPSVENVNAKVVSCGARHSAIVSEDGKVFCWGWNKYGQLGLG 458

Query: 199 DVIDRNIPVEVPIENCTPTNVACGWWHTLLLAESPT 235
           DVIDRNIPVEVP+ENC   NVACGWWHTLLLAESPT
Sbjct: 459 DVIDRNIPVEVPMENCNSKNVACGWWHTLLLAESPT 493

[Close]
BLAST of CmoCh04G001960.1 vs. NCBI nr
Match: gi|778701100|ref|XP_011654965.1| (PREDICTED: ultraviolet-B receptor UVR8 isoform X3 [Cucumis sativus])

HSP 1 Score: 291.2 bits (744), Expect = 1.6e-75
Identity = 140/166 (84.34%), Postives = 146/166 (87.95%), Query Frame = 1 

Query: 79  SFSWTLSLLLCGQGCTDDELSPTCVSSLLGIRIESVAAGLWHTVCISADGDIYSFGGNQF 138
           +F W L    CGQGCTDDELSPTCVSSLLGIRIESVAAGLWHTVCIS+DGDIYSFGGNQF
Sbjct: 332 TFGWGL-YGQCGQGCTDDELSPTCVSSLLGIRIESVAAGLWHTVCISSDGDIYSFGGNQF 391

Query: 139 GQLGTGADQAETLPRLLDAASVENVNAKVVSCGARHSAIVTDNGKVFCWGWNKYG----- 198
           GQLGTGADQAETLPRLLDA SVENVNAKVVSCGARHSAIV+++GKVFCWGWNKYG     
Sbjct: 392 GQLGTGADQAETLPRLLDAPSVENVNAKVVSCGARHSAIVSEDGKVFCWGWNKYGQILEA 451

Query: 199 -----QLGLGDVIDRNIPVEVPIENCTPTNVACGWWHTLLLAESPT 235
                QLGLGDVIDRNIPVEVP+ENC   NVACGWWHTLLLAESPT
Sbjct: 452 STYTLQLGLGDVIDRNIPVEVPMENCNSKNVACGWWHTLLLAESPT 496

The following BLAST results are available for this feature:
BLAST of CmoCh04G001960.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
UVR8_ARATH5.8e-2538.89Ultraviolet-B receptor UVR8 OS=Arabidopsis thaliana GN=UVR8 PE=1 SV=1[more]
RCBT2_RAT4.0e-1833.33RCC1 and BTB domain-containing protein 2 OS=Rattus norvegicus GN=Rcbtb2 PE=2 SV=... [more]
HERC5_HUMAN5.3e-1836.15E3 ISG15--protein ligase HERC5 OS=Homo sapiens GN=HERC5 PE=1 SV=2[more]
RCBT2_MOUSE5.3e-1833.33RCC1 and BTB domain-containing protein 2 OS=Mus musculus GN=Rcbtb2 PE=2 SV=1[more]
RCCD1_HUMAN1.2e-1732.97RCC1 domain-containing protein 1 OS=Homo sapiens GN=RCCD1 PE=1 SV=1[more]
BLAST of CmoCh04G001960.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KLQ7_CUCSA4.1e-7889.74Uncharacterized protein OS=Cucumis sativus GN=Csa_5G184310 PE=4 SV=1[more]
A0A0D2VSB4_GOSRA1.4e-7382.05Uncharacterized protein OS=Gossypium raimondii GN=B456_011G268700 PE=4 SV=1[more]
A0A0B0PG70_GOSAR5.8e-7280.13RCC1 domain-containing 1 OS=Gossypium arboreum GN=F383_10353 PE=4 SV=1[more]
A0A061FLA7_THECC9.9e-7280.77Regulator of chromosome condensation repeat-containing protein isoform 1 OS=Theo... [more]
A0A0J8FRL4_BETVU1.7e-7181.41Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g025460 PE=4 S... [more]
BLAST of CmoCh04G001960.1 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G55580.14.8e-7074.51 Regulator of chromosome condensation (RCC1) family protein[more]
AT3G53830.16.6e-5962.82 Regulator of chromosome condensation (RCC1) family protein[more]
AT5G63860.13.3e-2638.89 Regulator of chromosome condensation (RCC1) family protein[more]
AT5G08710.13.0e-1931.91 Regulator of chromosome condensation (RCC1) family protein[more]
AT5G12350.11.5e-1832.90 Regulator of chromosome condensation (RCC1) family with FYVE zinc fi... [more]
BLAST of CmoCh04G001960.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659123524|ref|XP_008461710.1|5.4e-7990.38PREDICTED: ultraviolet-B receptor UVR8 isoform X2 [Cucumis melo][more]
gi|659123522|ref|XP_008461709.1|5.4e-7990.38PREDICTED: ultraviolet-B receptor UVR8 isoform X1 [Cucumis melo][more]
gi|449465846|ref|XP_004150638.1|5.9e-7889.74PREDICTED: ultraviolet-B receptor UVR8 isoform X5 [Cucumis sativus][more]
gi|778701104|ref|XP_011654966.1|5.9e-7889.74PREDICTED: ultraviolet-B receptor UVR8 isoform X4 [Cucumis sativus][more]
gi|778701100|ref|XP_011654965.1|1.6e-7584.34PREDICTED: ultraviolet-B receptor UVR8 isoform X3 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR000408Reg_chr_condens
IPR009091RCC1/BLIP-II
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmoCh04G001960CmoCh04G001960gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmoCh04G001960.1CmoCh04G001960.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh04G001960.1.exon.1CmoCh04G001960.1.exon.1exon
CmoCh04G001960.1.exon.2CmoCh04G001960.1.exon.2exon
CmoCh04G001960.1.exon.3CmoCh04G001960.1.exon.3exon
CmoCh04G001960.1.exon.4CmoCh04G001960.1.exon.4exon
CmoCh04G001960.1.exon.5CmoCh04G001960.1.exon.5exon
CmoCh04G001960.1.exon.6CmoCh04G001960.1.exon.6exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh04G001960.1.CDS.1CmoCh04G001960.1.CDS.1CDS
CmoCh04G001960.1.CDS.2CmoCh04G001960.1.CDS.2CDS
CmoCh04G001960.1.CDS.3CmoCh04G001960.1.CDS.3CDS
CmoCh04G001960.1.CDS.4CmoCh04G001960.1.CDS.4CDS
CmoCh04G001960.1.CDS.5CmoCh04G001960.1.CDS.5CDS
CmoCh04G001960.1.CDS.6CmoCh04G001960.1.CDS.6CDS


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000408Regulator of chromosome condensation, RCC1PRINTSPR00633RCCNDNSATIONcoord: 111..124
score: 1.3E-6coord: 130..146
score: 1.3E-6coord: 182..198
score: 1.3E-6coord: 219..234
score: 1.
IPR000408Regulator of chromosome condensation, RCC1PFAMPF00415RCC1coord: 127..177
score: 2.2E-11coord: 181..229
score: 8.5
IPR000408Regulator of chromosome condensation, RCC1PROSITEPS00626RCC1_2coord: 114..124
score: -coord: 219..229
scor
IPR000408Regulator of chromosome condensation, RCC1PROFILEPS50012RCC1_3coord: 128..181
score: 14.263coord: 182..232
score: 15
IPR009091Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein IIGENE3DG3DSA:2.130.10.30coord: 89..232
score: 1.1
IPR009091Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein IIunknownSSF50985RCC1/BLIP-IIcoord: 89..231
score: 6.93
NoneNo IPR availablePANTHERPTHR22870REGULATOR OF CHROMOSOME CONDENSATIONcoord: 89..234
score: 2.2
NoneNo IPR availablePANTHERPTHR22870:SF204REGULATOR OF CHROMOSOME CONDENSATION REPEAT-CONTAINING PROTEINcoord: 89..234
score: 2.2