CmoCh04G001960 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G001960
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Regulator of chromosome condensation (RCC1) family protein
Location	Cmo_Chr04 : 976803 .. 978746 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCTATTCATTAATTTCTTTTTCTGTTCTTTTTCACTTATTACCTAATAGCCATGCCTCTTTCATTTGCACGTTAAATAGTTTGATCCTTTGTACAACCCAACATCAGCTGGAGTTTAATATTTTGACAATTGATCAATCTTCAGAATCCATCTGTAGGTAAAGTAGAAAATGGTGGAGAAAAAGATACGTAGATGTAGATCAAGATCAAGTTCAATTGAAAAGAGATAATTCTTTCTGTTCCTTTTCCTGGACTTTATCTCTACTTCTTGTGCTGCTGCTATATTTTTGGCTTAATTTATGTCTTACAGTGTGGGCAAGGGTGTACAGATGATGAGTTAAGTCCAACATGTGTATCCTCGTTACTCGGTATCCGGATCGAGAGTGTCGCTGCTGGACTGTGGCACACAGTCTGTATATCTGCAGATGGTGATATATACTCATTTGGAGGAAATCAGTTTGGGCAGTTAGGAACAGGTGCTGATCAAGCTGAGGTATGCTTTAGTAACCGCTTCAACTTGTCAGATCATGCCAGCAGGCATCCTCGATCAGATTTCTATGATAGTATGCATTCTAAAGCAGAACAAAGTAATTTATGGCTATGTCTTATTTTGTTTCCAACCATTTATTCAGACACTTCCAAGACTTCTAGATGCAGCAAGTGTGGAAAATGTAAACGCAAAGGTTGTATCTTGTGGGGCTCGTCATAGTGCTATAGTAACAGGTACTTCATTGTTTACTTGGTACTATTCTATGTGCTTTTTGATTCATAAGACCCAGTCTTTAATTTACTGGGATGAAAAAGTTCAAATTTCTGAACTTTAAATTAGAAGTGAGAAATTATAAACAATAATGGTACAGAAGTCCAAAGCATGGGTGCTTCCGGTGGGAATTCACAAAACTTTAGGCACAGGCTAAAACTAAAAGCTAGTCATCACTGAGATTATTTGTGAGATTCCACATCGTTTGGTGAGGGGAACAAAGCATTCTTTATAAGGGTGTTGGAAACCACTCCCTAGCAGTCGCGTTTTAAAACCTTGAGGGGAAGCTCAAAAGGGAAAGCCCAAAGAGACAATATGTGCTAGCGGTGGATTTGGGCTGTTTCAGATGGTATCAGAGCCAGACACTGGGTGGCAGTATGTCAGCGAGGATACTACGCCCTCAAGGGGGGTGAATTGTGAGATCCCATGTCAGTTGGAGAGGGAAATTGAAAACTTCTCCCTTACATGCGCATTTTAAAATCTTGAAGGGAAACTCGAAAGGGAAAGTTCAAAGAGGACAATATTTGCCAGCGGTGGACTTGGGTTATTTGGGCTTGAAGTGTTGTTACATTATTTCTTGGGGAGAGAGAGACATTTTATGTTGGGAACTTCATAGAAGATCTAGTTGATCTGTGTTTTTTTTCTTCTTTTAAACCTCTTGGTTCTGAAGAAATTGTGTCTGTTTAGAAGACATCTAGTAGAACGAAAGGAAAAAAGGAGGAAGATATACCTGTTTAAGTCGAATTGTCACCAAGAACTTCTAAAGAACTATGTTATAACTGAACTTCTCTAAACTTTATGCATTATATTTGAAGAATTTGGATTGTTGGATACTCATTTTTGTGATATTCATTCTAACGTCTTCTTTCTCCAATTTCTAGACAATGGGAAAGTGTTCTGCTGGGGTTGGAACAAATATGGCCAGGTATGTTGGTTTGATTCCTTGTTTTCTTGTTCCTTAAAAATACTGTCACAAATATTCTGCAGTTTTTCATGTCCTCTTCATAAATGCATGTTTATAAGTTGTTTTCTTAGAAGTTTCCATTTACACACTGCAGTTGGGTTTGGGTGATGTAATCGACCGTAATATCCCTGTTGAAGTCCCGATCGAAAATTGCACTCCTACGAACGTTGCCTGTGGATGGTGGCACACCCTGCTTTTGGCCGAATCACCCACCTGA

mRNA sequence

ATGTTCTATTCATTAATTTCTTTTTCTGTTCTTTTTCACTTATTACCTAATAGCCATGCCTCTTTCATTTGCACGTTAAATAGTTTGATCCTTTGTACAACCCAACATCAGCTGGAGTTTAATATTTTGACAATTGATCAATCTTCAGAATCCATCTGTAGAAAATGGTGGAGAAAAAGATACGTAGATGTAGATCAAGATCAAGTTCAATTGAAAAGAGATAATTCTTTCTGTTCCTTTTCCTGGACTTTATCTCTACTTCTTTGTGGGCAAGGGTGTACAGATGATGAGTTAAGTCCAACATGTGTATCCTCGTTACTCGGTATCCGGATCGAGAGTGTCGCTGCTGGACTGTGGCACACAGTCTGTATATCTGCAGATGGTGATATATACTCATTTGGAGGAAATCAGTTTGGGCAGTTAGGAACAGGTGCTGATCAAGCTGAGACACTTCCAAGACTTCTAGATGCAGCAAGTGTGGAAAATGTAAACGCAAAGGTTGTATCTTGTGGGGCTCGTCATAGTGCTATAGTAACAGACAATGGGAAAGTGTTCTGCTGGGGTTGGAACAAATATGGCCAGTTGGGTTTGGGTGATGTAATCGACCGTAATATCCCTGTTGAAGTCCCGATCGAAAATTGCACTCCTACGAACGTTGCCTGTGGATGGTGGCACACCCTGCTTTTGGCCGAATCACCCACCTGA

Coding sequence (CDS)

ATGTTCTATTCATTAATTTCTTTTTCTGTTCTTTTTCACTTATTACCTAATAGCCATGCCTCTTTCATTTGCACGTTAAATAGTTTGATCCTTTGTACAACCCAACATCAGCTGGAGTTTAATATTTTGACAATTGATCAATCTTCAGAATCCATCTGTAGAAAATGGTGGAGAAAAAGATACGTAGATGTAGATCAAGATCAAGTTCAATTGAAAAGAGATAATTCTTTCTGTTCCTTTTCCTGGACTTTATCTCTACTTCTTTGTGGGCAAGGGTGTACAGATGATGAGTTAAGTCCAACATGTGTATCCTCGTTACTCGGTATCCGGATCGAGAGTGTCGCTGCTGGACTGTGGCACACAGTCTGTATATCTGCAGATGGTGATATATACTCATTTGGAGGAAATCAGTTTGGGCAGTTAGGAACAGGTGCTGATCAAGCTGAGACACTTCCAAGACTTCTAGATGCAGCAAGTGTGGAAAATGTAAACGCAAAGGTTGTATCTTGTGGGGCTCGTCATAGTGCTATAGTAACAGACAATGGGAAAGTGTTCTGCTGGGGTTGGAACAAATATGGCCAGTTGGGTTTGGGTGATGTAATCGACCGTAATATCCCTGTTGAAGTCCCGATCGAAAATTGCACTCCTACGAACGTTGCCTGTGGATGGTGGCACACCCTGCTTTTGGCCGAATCACCCACCTGA

Homology

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BLAST of CmoCh04G001960 vs. Swiss-Prot
Match: UVR8_ARATH (Ultraviolet-B receptor UVR8 OS=Arabidopsis thaliana GN=UVR8 PE=1 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 5.8e-25
Identity = 56/144 (38.89%), Postives = 87/144 (60.42%), Query Frame = 1


Query: 90  GQGCTDDELSPTCVSSLLGIRIESVAAGLWHTVCISADGDIYSFGGNQFGQLGTGADQAE 149
           G G + D  +P  + +L GIRI+ +A G  H + ++ +G++ S+G NQ GQLG G  +  
Sbjct: 101 GHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDS 160

Query: 150 TLPRLLDAASVENVNAKVVSCGARHSAIVTDNGKVFCWGWNKYGQLGLGDVIDRNIPVEV 209
            +P+ + A   E +  K+V+ GA H+A VT++G ++ WGW +YG LGLGD  DR +P  V
Sbjct: 161 LVPQKIQA--FEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERV 220

Query: 210 PIENCTPTN-VACGWWHTLLLAES 233
                   + VACGW HT+ ++ S
Sbjct: 221 TSTGGEKMSMVACGWRHTISVSYS 242

[Close]

BLAST of CmoCh04G001960 vs. Swiss-Prot
Match: RCBT2_RAT (RCC1 and BTB domain-containing protein 2 OS=Rattus norvegicus GN=Rcbtb2 PE=2 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 4.0e-18
Identity = 48/144 (33.33%), Postives = 84/144 (58.33%), Query Frame = 1


Query: 90  GQGCTDDELSPTCVSSLLGIR-IESVAAGLWHTVCISADGDIYSFGGNQFGQLGTGADQA 149
           G G T+  L P  +S+ L  + +  VA G +H++ +++DG+++++G N  GQ+G+G+   
Sbjct: 132 GNGTTNHGLVPCHISTNLSNKQVIEVACGSYHSLVLTSDGEVFAWGYNNSGQVGSGSTAN 191

Query: 150 ETLPRLLDAASVENVNAKVVSCGARHSAIVTDNGKVFCWGWNKYGQLGLGDVIDRNIPVE 209
           + +PR +    ++N     ++CG   S  V D G+V+ WG+N  GQLGLG   ++  P  
Sbjct: 192 QPIPRRV-TGCLQNKVVMSIACGQMCSMAVVDTGEVYVWGYNGNGQLGLGSSGNQPTPCR 251

Query: 210 V-PIENCTPTNVACGWWHTLLLAE 232
           V  ++      VACG+ HTL+L +
Sbjct: 252 VAALQGIRVQRVACGYAHTLVLTD 274

[Close]

BLAST of CmoCh04G001960 vs. Swiss-Prot
Match: HERC5_HUMAN (E3 ISG15--protein ligase HERC5 OS=Homo sapiens GN=HERC5 PE=1 SV=2)

HSP 1 Score: 92.8 bits (229), Expect = 5.3e-18
Identity = 47/130 (36.15%), Postives = 76/130 (58.46%), Query Frame = 1


Query: 99  SPTCVSSLLGIRIESVAAGLWHTVCISADGDIYSFGGNQFGQLGTGADQAETLPRLLDAA 158
           +P  V  L G+ +  ++AG  H++ +S  G+IYS+G N+ GQLG G  +++  P L++  
Sbjct: 181 TPQIVEHLAGVPLAQISAGEAHSMALSMSGNIYSWGKNECGQLGLGHTESKDDPSLIE-- 240

Query: 159 SVENVNAKVVSCGARHSAIVTDNGKVFCWGWNKYGQLGLGDVIDRNIPVEV-PIENCTPT 218
            ++N   + V+CG  HSA++T +G +F +G  K+GQLG     +   P  V  +     T
Sbjct: 241 GLDNQKVEFVACGGSHSALLTQDGLLFTFGAGKHGQLGHNSTQNELRPCLVAELVGYRVT 300

Query: 219 NVACGWWHTL 228
            +ACG WHTL
Sbjct: 301 QIACGRWHTL 308

[Close]

BLAST of CmoCh04G001960 vs. Swiss-Prot
Match: RCBT2_MOUSE (RCC1 and BTB domain-containing protein 2 OS=Mus musculus GN=Rcbtb2 PE=2 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 5.3e-18
Identity = 48/144 (33.33%), Postives = 84/144 (58.33%), Query Frame = 1


Query: 90  GQGCTDDELSPTCVSSLLGIR-IESVAAGLWHTVCISADGDIYSFGGNQFGQLGTGADQA 149
           G G T+  L P  +S+ L  + +  VA G +H++ +++DG+++++G N  GQ+G+G+   
Sbjct: 132 GNGTTNHGLVPCHISTNLSNKQVIEVACGSYHSLVLTSDGEVFAWGYNNSGQVGSGSTAN 191

Query: 150 ETLPRLLDAASVENVNAKVVSCGARHSAIVTDNGKVFCWGWNKYGQLGLGDVIDRNIPVE 209
           + +PR +    ++N     ++CG   S  V D G+V+ WG+N  GQLGLG   ++  P  
Sbjct: 192 QPIPRRV-TGCLQNKVVMNIACGQMCSMAVVDTGEVYVWGYNGNGQLGLGSSGNQPTPCR 251

Query: 210 V-PIENCTPTNVACGWWHTLLLAE 232
           V  ++      VACG+ HTL+L +
Sbjct: 252 VAALQGIRVQRVACGYAHTLVLTD 274

[Close]

BLAST of CmoCh04G001960 vs. Swiss-Prot
Match: RCCD1_HUMAN (RCC1 domain-containing protein 1 OS=Homo sapiens GN=RCCD1 PE=1 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.2e-17
Identity = 60/182 (32.97%), Postives = 83/182 (45.60%), Query Frame = 1


Query: 90  GQGCTDDELSPTCVSSLLGIRIESVAAGLWHTVCISADGDIYSFG--------------- 149
           G G  + EL P  + +L G+ +  VAAG WH+VC+S  GDIY +G               
Sbjct: 191 GHGTLEAELEPRLLEALQGLVMAEVAAGGWHSVCVSETGDIYIWGWNESGQLALPTRNLA 250

Query: 150 ----------------GNQFGQLGTGADQA-------ETLPRLLDAASVENVNAKVVSCG 209
                           G+Q  + G   D A       +  P LLD       +A   SCG
Sbjct: 251 EDGETVAREATELNEDGSQVKRTGGAEDGAPAPFIAVQPFPALLDLPM--GSDAVKASCG 310

Query: 210 ARHSAIVTDNGKVFCWGWNKYGQLGLGDV--IDRNIPVEVPIENCTPTN-VACGWWHTLL 231
           +RH+A+VT  G+++ WGW KYGQLG  D   +DR   VE  ++       V CG W+T +
Sbjct: 311 SRHTAVVTRTGELYTWGWGKYGQLGHEDTTSLDRPRRVEYFVDKQLQVKAVTCGPWNTYV 370

[Close]

BLAST of CmoCh04G001960 vs. TrEMBL
Match: A0A0A0KLQ7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G184310 PE=4 SV=1)

HSP 1 Score: 299.3 bits (765), Expect = 4.1e-78
Identity = 140/156 (89.74%), Postives = 146/156 (93.59%), Query Frame = 1


Query: 79  SFSWTLSLLLCGQGCTDDELSPTCVSSLLGIRIESVAAGLWHTVCISADGDIYSFGGNQF 138
           +F W L    CGQGCTDDELSPTCVSSLLGIRIESVAAGLWHTVCIS+DGDIYSFGGNQF
Sbjct: 337 TFGWGL-YGQCGQGCTDDELSPTCVSSLLGIRIESVAAGLWHTVCISSDGDIYSFGGNQF 396

Query: 139 GQLGTGADQAETLPRLLDAASVENVNAKVVSCGARHSAIVTDNGKVFCWGWNKYGQLGLG 198
           GQLGTGADQAETLPRLLDA SVENVNAKVVSCGARHSAIV+++GKVFCWGWNKYGQLGLG
Sbjct: 397 GQLGTGADQAETLPRLLDAPSVENVNAKVVSCGARHSAIVSEDGKVFCWGWNKYGQLGLG 456

Query: 199 DVIDRNIPVEVPIENCTPTNVACGWWHTLLLAESPT 235
           DVIDRNIPVEVP+ENC   NVACGWWHTLLLAESPT
Sbjct: 457 DVIDRNIPVEVPMENCNSKNVACGWWHTLLLAESPT 491

[Close]

BLAST of CmoCh04G001960 vs. TrEMBL
Match: A0A0D2VSB4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G268700 PE=4 SV=1)

HSP 1 Score: 284.3 bits (726), Expect = 1.4e-73
Identity = 128/156 (82.05%), Postives = 140/156 (89.74%), Query Frame = 1


Query: 79  SFSWTLSLLLCGQGCTDDELSPTCVSSLLGIRIESVAAGLWHTVCISADGDIYSFGGNQF 138
           +F W L    CGQG TDDELSPTCVSSLLGIRIESVAAGLWHTVC+S DGD+Y+FGGNQF
Sbjct: 333 TFGWGL-YGQCGQGSTDDELSPTCVSSLLGIRIESVAAGLWHTVCVSTDGDVYAFGGNQF 392

Query: 139 GQLGTGADQAETLPRLLDAASVENVNAKVVSCGARHSAIVTDNGKVFCWGWNKYGQLGLG 198
           GQLGTG DQAETLPRLLDA S+EN N K+VSCGARHSAI+T++GK+FCWGWNKYGQLGLG
Sbjct: 393 GQLGTGGDQAETLPRLLDAPSLENTNVKIVSCGARHSAIITEDGKIFCWGWNKYGQLGLG 452

Query: 199 DVIDRNIPVEVPIENCTPTNVACGWWHTLLLAESPT 235
           DVIDRNIP EV IE C+P N+ACGWWHTLLLAESPT
Sbjct: 453 DVIDRNIPSEVTIEGCSPKNIACGWWHTLLLAESPT 487

[Close]

BLAST of CmoCh04G001960 vs. TrEMBL
Match: A0A0B0PG70_GOSAR (RCC1 domain-containing 1 OS=Gossypium arboreum GN=F383_10353 PE=4 SV=1)

HSP 1 Score: 278.9 bits (712), Expect = 5.8e-72
Identity = 125/156 (80.13%), Postives = 139/156 (89.10%), Query Frame = 1


Query: 79  SFSWTLSLLLCGQGCTDDELSPTCVSSLLGIRIESVAAGLWHTVCISADGDIYSFGGNQF 138
           +F W L    CGQG TDDELSPTCVS+LLGIRIESVAAGLWHTVC+S DGD+Y+FGGNQF
Sbjct: 267 TFGWGL-YGQCGQGSTDDELSPTCVSALLGIRIESVAAGLWHTVCVSTDGDVYAFGGNQF 326

Query: 139 GQLGTGADQAETLPRLLDAASVENVNAKVVSCGARHSAIVTDNGKVFCWGWNKYGQLGLG 198
           GQLGTG DQAETLPRLLDA S+EN N K+VSCGARHSAI+T++GK+FCWGWNKYGQLGLG
Sbjct: 327 GQLGTGGDQAETLPRLLDAPSLENTNVKIVSCGARHSAIITEDGKIFCWGWNKYGQLGLG 386

Query: 199 DVIDRNIPVEVPIENCTPTNVACGWWHTLLLAESPT 235
           DVIDRNIP +V IE C+P N+ACGWWHTLLLA SPT
Sbjct: 387 DVIDRNIPSQVTIEGCSPKNIACGWWHTLLLALSPT 421

[Close]

BLAST of CmoCh04G001960 vs. TrEMBL
Match: A0A061FLA7_THECC (Regulator of chromosome condensation repeat-containing protein isoform 1 OS=Theobroma cacao GN=TCM_042741 PE=4 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 9.9e-72
Identity = 126/156 (80.77%), Postives = 140/156 (89.74%), Query Frame = 1


Query: 79  SFSWTLSLLLCGQGCTDDELSPTCVSSLLGIRIESVAAGLWHTVCISADGDIYSFGGNQF 138
           +F W L    CGQG TDDELSPTCVSSLLGI IE+VAAGLWHTVCISADGD+Y+FGGNQF
Sbjct: 332 TFGWGL-YGQCGQGSTDDELSPTCVSSLLGITIEAVAAGLWHTVCISADGDVYAFGGNQF 391

Query: 139 GQLGTGADQAETLPRLLDAASVENVNAKVVSCGARHSAIVTDNGKVFCWGWNKYGQLGLG 198
           GQLGTG DQAETLPRLLDA S+EN +AKVVSCGARHSA++T++GKVFCWGWNKYGQLGLG
Sbjct: 392 GQLGTGGDQAETLPRLLDAPSLENTHAKVVSCGARHSAVITEDGKVFCWGWNKYGQLGLG 451

Query: 199 DVIDRNIPVEVPIENCTPTNVACGWWHTLLLAESPT 235
           DVIDRNIP +V I+ C P N+ACGWWHTLLLA+SPT
Sbjct: 452 DVIDRNIPSQVTIDGCGPKNIACGWWHTLLLADSPT 486

[Close]

BLAST of CmoCh04G001960 vs. TrEMBL
Match: A0A0J8FRL4_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g025460 PE=4 SV=1)

HSP 1 Score: 277.3 bits (708), Expect = 1.7e-71
Identity = 127/156 (81.41%), Postives = 141/156 (90.38%), Query Frame = 1


Query: 79  SFSWTLSLLLCGQGCTDDELSPTCVSSLLGIRIESVAAGLWHTVCISADGDIYSFGGNQF 138
           +F W L    CGQG TDD LSPTCVSSLLGIRIESVAAGLWHT+CISADGD+Y+FGGNQF
Sbjct: 329 AFGWGL-YGQCGQGATDDVLSPTCVSSLLGIRIESVAAGLWHTLCISADGDVYAFGGNQF 388

Query: 139 GQLGTGADQAETLPRLLDAASVENVNAKVVSCGARHSAIVTDNGKVFCWGWNKYGQLGLG 198
           GQLGTG+DQAETLPRLL+A SV+NVNA +VSCGARHSAIVT++GKVFCWGWNKYGQLGLG
Sbjct: 389 GQLGTGSDQAETLPRLLEAPSVDNVNATIVSCGARHSAIVTEDGKVFCWGWNKYGQLGLG 448

Query: 199 DVIDRNIPVEVPIENCTPTNVACGWWHTLLLAESPT 235
           DVIDRNIP +V +++C   NVACGWWHTLLLAESPT
Sbjct: 449 DVIDRNIPSQVKLDDCVAKNVACGWWHTLLLAESPT 483

[Close]

BLAST of CmoCh04G001960 vs. TAIR10
Match: AT3G55580.1 (AT3G55580.1 Regulator of chromosome condensation (RCC1) family protein)

HSP 1 Score: 261.5 bits (667), Expect = 4.8e-70
Identity = 114/153 (74.51%), Postives = 132/153 (86.27%), Query Frame = 1


Query: 79  SFSWTLSLLLCGQGCTDDELSPTCVSSLLGIRIESVAAGLWHTVCISADGDIYSFGGNQF 138
           +F W L    CGQG TDDELSPTCVSSLLGIRIE VAAGLWHT C S+DGD+Y+FGGNQF
Sbjct: 334 TFGWGL-YGQCGQGSTDDELSPTCVSSLLGIRIEEVAAGLWHTTCASSDGDVYAFGGNQF 393

Query: 139 GQLGTGADQAETLPRLLDAASVENVNAKVVSCGARHSAIVTDNGKVFCWGWNKYGQLGLG 198
           GQLGTG DQAETLP+LL+A ++ENVN K +SCGARH+A++TD G+VFCWGWNKYGQLG+G
Sbjct: 394 GQLGTGCDQAETLPKLLEAPNLENVNVKTISCGARHTAVITDEGRVFCWGWNKYGQLGIG 453

Query: 199 DVIDRNIPVEVPIENCTPTNVACGWWHTLLLAE 232
           DVIDRN P EV I++C P N+ACGWWHTLLL +
Sbjct: 454 DVIDRNAPAEVRIKDCFPKNIACGWWHTLLLGQ 485

[Close]

BLAST of CmoCh04G001960 vs. TAIR10
Match: AT3G53830.1 (AT3G53830.1 Regulator of chromosome condensation (RCC1) family protein)

HSP 1 Score: 224.6 bits (571), Expect = 6.6e-59
Identity = 98/156 (62.82%), Postives = 121/156 (77.56%), Query Frame = 1


Query: 79  SFSWTLSLLLCGQGCTDDELSPTCVSSLLGIRIESVAAGLWHTVCISADGDIYSFGGNQF 138
           +F W L    CG G T+D+L P  VS +  +R+ESVAAGLWHT+CIS+DG +Y+FGGNQF
Sbjct: 318 TFGWGL-YGQCGHGNTNDQLRPMAVSEVKSVRMESVAAGLWHTICISSDGKVYAFGGNQF 377

Query: 139 GQLGTGADQAETLPRLLDAASVENVNAKVVSCGARHSAIVTDNGKVFCWGWNKYGQLGLG 198
           GQLGTG D AE LPRLLD  ++E  +AK VSCGARHSA++ ++G++ CWGWNKYGQLGLG
Sbjct: 378 GQLGTGTDHAEILPRLLDGQNLEGKHAKAVSCGARHSAVLAEDGQLLCWGWNKYGQLGLG 437

Query: 199 DVIDRNIPVEVPIENCTPTNVACGWWHTLLLAESPT 235
           D  DRNIP +V ++ C    VACGWWHTLLL +SPT
Sbjct: 438 DTNDRNIPTQVQLDGCRLRKVACGWWHTLLLGDSPT 472

[Close]

BLAST of CmoCh04G001960 vs. TAIR10
Match: AT5G63860.1 (AT5G63860.1 Regulator of chromosome condensation (RCC1) family protein)

HSP 1 Score: 115.9 bits (289), Expect = 3.3e-26
Identity = 56/144 (38.89%), Postives = 87/144 (60.42%), Query Frame = 1


Query: 90  GQGCTDDELSPTCVSSLLGIRIESVAAGLWHTVCISADGDIYSFGGNQFGQLGTGADQAE 149
           G G + D  +P  + +L GIRI+ +A G  H + ++ +G++ S+G NQ GQLG G  +  
Sbjct: 101 GHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDS 160

Query: 150 TLPRLLDAASVENVNAKVVSCGARHSAIVTDNGKVFCWGWNKYGQLGLGDVIDRNIPVEV 209
            +P+ + A   E +  K+V+ GA H+A VT++G ++ WGW +YG LGLGD  DR +P  V
Sbjct: 161 LVPQKIQA--FEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERV 220

Query: 210 PIENCTPTN-VACGWWHTLLLAES 233
                   + VACGW HT+ ++ S
Sbjct: 221 TSTGGEKMSMVACGWRHTISVSYS 242

[Close]

BLAST of CmoCh04G001960 vs. TAIR10
Match: AT5G08710.1 (AT5G08710.1 Regulator of chromosome condensation (RCC1) family protein)

HSP 1 Score: 92.8 bits (229), Expect = 3.0e-19
Identity = 45/141 (31.91%), Postives = 75/141 (53.19%), Query Frame = 1


Query: 94  TDDELSPTCVSSLLGIRIESVAAGLWHTVCISADGDIYSFGGNQFGQLGTGADQAETLPR 153
           ++ E +P  +  L GI++ +VAAGL H+ C   +G  + FG     ++G G  +  T P 
Sbjct: 234 SNSEFTPRLIKELEGIKVTNVAAGLLHSACTDENGSAFMFGEKSINKMGFGGVRNATTPS 293

Query: 154 LLDAASVENVNAKVVSCGARHSAIVTDNGKVFCWGWNKYGQLGLGDVIDRNIPVEV--PI 213
           ++     E   A+ V+CG  H+ +VT  G+++ WG N+ G LG       + PV V  P 
Sbjct: 294 IIS----EVPYAEEVACGGYHTCVVTRGGELYTWGSNENGCLGTDSTYVSHSPVRVEGPF 353

Query: 214 ENCTPTNVACGWWHTLLLAES 233
              T + V+CGW HT  ++++
Sbjct: 354 LESTVSQVSCGWKHTAAISDN 370

[Close]

BLAST of CmoCh04G001960 vs. TAIR10
Match: AT5G12350.1 (AT5G12350.1 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain)

HSP 1 Score: 90.5 bits (223), Expect = 1.5e-18
Identity = 51/155 (32.90%), Postives = 81/155 (52.26%), Query Frame = 1


Query: 79  SFSW-TLSLLLCGQGCTDDELSPTCVSSLLGIRIESVAAGLWHTVCISADGDIYSFGGNQ 138
           SFSW   S    G G   +   P  + +L    IE VA G +H+  ++  GD+Y++G   
Sbjct: 329 SFSWGEESEGRLGHGVDSNIQQPKLIDALNTTNIELVACGEFHSCAVTLSGDLYTWGKGD 388

Query: 139 FGQLGTGADQAETLPRLLDAASVENVNAKVVSCGARHSAIVTDNGKVFCWGWNKYGQLGL 198
           FG LG G + +  +P+ ++   +E ++   ++CG  H+A+VT  G++F +G   +G LG 
Sbjct: 389 FGVLGHGNEVSHWVPKRVNFL-LEGIHVSSIACGPYHTAVVTSAGQLFTFGDGTFGVLGH 448

Query: 199 GDVIDRNIPVEV-PIENCTPTNVACGWWHTLLLAE 232
           GD     IP EV  ++       ACG WHT  + E
Sbjct: 449 GDKKSVFIPREVDSLKGLRTVRAACGVWHTAAVVE 482

[Close]

BLAST of CmoCh04G001960 vs. NCBI nr
Match: gi|659123524|ref|XP_008461710.1| (PREDICTED: ultraviolet-B receptor UVR8 isoform X2 [Cucumis melo])

HSP 1 Score: 302.8 bits (774), Expect = 5.4e-79
Identity = 141/156 (90.38%), Postives = 148/156 (94.87%), Query Frame = 1


Query: 79  SFSWTLSLLLCGQGCTDDELSPTCVSSLLGIRIESVAAGLWHTVCISADGDIYSFGGNQF 138
           +F W L    CG+GCTDDELSPTCVSSLLGIRIESVAAGLWHTVCIS+DGDIYSFGGNQF
Sbjct: 332 TFGWGL-YGQCGRGCTDDELSPTCVSSLLGIRIESVAAGLWHTVCISSDGDIYSFGGNQF 391

Query: 139 GQLGTGADQAETLPRLLDAASVENVNAKVVSCGARHSAIVTDNGKVFCWGWNKYGQLGLG 198
           GQLGTGADQAETLPRLLDA SVENVNAKVVSCGARHSAIV+++GKVFCWGWNKYGQLGLG
Sbjct: 392 GQLGTGADQAETLPRLLDAPSVENVNAKVVSCGARHSAIVSEDGKVFCWGWNKYGQLGLG 451

Query: 199 DVIDRNIPVEVPIENCTPTNVACGWWHTLLLAESPT 235
           DVIDRNIPVEVP+ENCTP NVACGWWHTLLLAESPT
Sbjct: 452 DVIDRNIPVEVPMENCTPKNVACGWWHTLLLAESPT 486

[Close]

BLAST of CmoCh04G001960 vs. NCBI nr
Match: gi|659123522|ref|XP_008461709.1| (PREDICTED: ultraviolet-B receptor UVR8 isoform X1 [Cucumis melo])

HSP 1 Score: 302.8 bits (774), Expect = 5.4e-79
Identity = 141/156 (90.38%), Postives = 148/156 (94.87%), Query Frame = 1


Query: 79  SFSWTLSLLLCGQGCTDDELSPTCVSSLLGIRIESVAAGLWHTVCISADGDIYSFGGNQF 138
           +F W L    CG+GCTDDELSPTCVSSLLGIRIESVAAGLWHTVCIS+DGDIYSFGGNQF
Sbjct: 337 TFGWGL-YGQCGRGCTDDELSPTCVSSLLGIRIESVAAGLWHTVCISSDGDIYSFGGNQF 396

Query: 139 GQLGTGADQAETLPRLLDAASVENVNAKVVSCGARHSAIVTDNGKVFCWGWNKYGQLGLG 198
           GQLGTGADQAETLPRLLDA SVENVNAKVVSCGARHSAIV+++GKVFCWGWNKYGQLGLG
Sbjct: 397 GQLGTGADQAETLPRLLDAPSVENVNAKVVSCGARHSAIVSEDGKVFCWGWNKYGQLGLG 456

Query: 199 DVIDRNIPVEVPIENCTPTNVACGWWHTLLLAESPT 235
           DVIDRNIPVEVP+ENCTP NVACGWWHTLLLAESPT
Sbjct: 457 DVIDRNIPVEVPMENCTPKNVACGWWHTLLLAESPT 491

[Close]

BLAST of CmoCh04G001960 vs. NCBI nr
Match: gi|449465846|ref|XP_004150638.1| (PREDICTED: ultraviolet-B receptor UVR8 isoform X5 [Cucumis sativus])

HSP 1 Score: 299.3 bits (765), Expect = 5.9e-78
Identity = 140/156 (89.74%), Postives = 146/156 (93.59%), Query Frame = 1


Query: 79  SFSWTLSLLLCGQGCTDDELSPTCVSSLLGIRIESVAAGLWHTVCISADGDIYSFGGNQF 138
           +F W L    CGQGCTDDELSPTCVSSLLGIRIESVAAGLWHTVCIS+DGDIYSFGGNQF
Sbjct: 337 TFGWGL-YGQCGQGCTDDELSPTCVSSLLGIRIESVAAGLWHTVCISSDGDIYSFGGNQF 396

Query: 139 GQLGTGADQAETLPRLLDAASVENVNAKVVSCGARHSAIVTDNGKVFCWGWNKYGQLGLG 198
           GQLGTGADQAETLPRLLDA SVENVNAKVVSCGARHSAIV+++GKVFCWGWNKYGQLGLG
Sbjct: 397 GQLGTGADQAETLPRLLDAPSVENVNAKVVSCGARHSAIVSEDGKVFCWGWNKYGQLGLG 456

Query: 199 DVIDRNIPVEVPIENCTPTNVACGWWHTLLLAESPT 235
           DVIDRNIPVEVP+ENC   NVACGWWHTLLLAESPT
Sbjct: 457 DVIDRNIPVEVPMENCNSKNVACGWWHTLLLAESPT 491

[Close]

BLAST of CmoCh04G001960 vs. NCBI nr
Match: gi|778701104|ref|XP_011654966.1| (PREDICTED: ultraviolet-B receptor UVR8 isoform X4 [Cucumis sativus])

HSP 1 Score: 299.3 bits (765), Expect = 5.9e-78
Identity = 140/156 (89.74%), Postives = 146/156 (93.59%), Query Frame = 1


Query: 79  SFSWTLSLLLCGQGCTDDELSPTCVSSLLGIRIESVAAGLWHTVCISADGDIYSFGGNQF 138
           +F W L    CGQGCTDDELSPTCVSSLLGIRIESVAAGLWHTVCIS+DGDIYSFGGNQF
Sbjct: 339 TFGWGL-YGQCGQGCTDDELSPTCVSSLLGIRIESVAAGLWHTVCISSDGDIYSFGGNQF 398

Query: 139 GQLGTGADQAETLPRLLDAASVENVNAKVVSCGARHSAIVTDNGKVFCWGWNKYGQLGLG 198
           GQLGTGADQAETLPRLLDA SVENVNAKVVSCGARHSAIV+++GKVFCWGWNKYGQLGLG
Sbjct: 399 GQLGTGADQAETLPRLLDAPSVENVNAKVVSCGARHSAIVSEDGKVFCWGWNKYGQLGLG 458

Query: 199 DVIDRNIPVEVPIENCTPTNVACGWWHTLLLAESPT 235
           DVIDRNIPVEVP+ENC   NVACGWWHTLLLAESPT
Sbjct: 459 DVIDRNIPVEVPMENCNSKNVACGWWHTLLLAESPT 493

[Close]

BLAST of CmoCh04G001960 vs. NCBI nr
Match: gi|778701100|ref|XP_011654965.1| (PREDICTED: ultraviolet-B receptor UVR8 isoform X3 [Cucumis sativus])

HSP 1 Score: 291.2 bits (744), Expect = 1.6e-75
Identity = 140/166 (84.34%), Postives = 146/166 (87.95%), Query Frame = 1


Query: 79  SFSWTLSLLLCGQGCTDDELSPTCVSSLLGIRIESVAAGLWHTVCISADGDIYSFGGNQF 138
           +F W L    CGQGCTDDELSPTCVSSLLGIRIESVAAGLWHTVCIS+DGDIYSFGGNQF
Sbjct: 332 TFGWGL-YGQCGQGCTDDELSPTCVSSLLGIRIESVAAGLWHTVCISSDGDIYSFGGNQF 391

Query: 139 GQLGTGADQAETLPRLLDAASVENVNAKVVSCGARHSAIVTDNGKVFCWGWNKYG----- 198
           GQLGTGADQAETLPRLLDA SVENVNAKVVSCGARHSAIV+++GKVFCWGWNKYG     
Sbjct: 392 GQLGTGADQAETLPRLLDAPSVENVNAKVVSCGARHSAIVSEDGKVFCWGWNKYGQILEA 451

Query: 199 -----QLGLGDVIDRNIPVEVPIENCTPTNVACGWWHTLLLAESPT 235
                QLGLGDVIDRNIPVEVP+ENC   NVACGWWHTLLLAESPT
Sbjct: 452 STYTLQLGLGDVIDRNIPVEVPMENCNSKNVACGWWHTLLLAESPT 496

The following BLAST results are available for this feature:

BLAST of CmoCh04G001960 vs. Swiss-Prot


Match Name	E-value	Identity	Description
UVR8_ARATH	5.8e-25	38.89	Ultraviolet-B receptor UVR8 OS=Arabidopsis thaliana GN=UVR8 PE=1 SV=1	[more]
RCBT2_RAT	4.0e-18	33.33	RCC1 and BTB domain-containing protein 2 OS=Rattus norvegicus GN=Rcbtb2 PE=2 SV=...	[more]
HERC5_HUMAN	5.3e-18	36.15	E3 ISG15--protein ligase HERC5 OS=Homo sapiens GN=HERC5 PE=1 SV=2	[more]
RCBT2_MOUSE	5.3e-18	33.33	RCC1 and BTB domain-containing protein 2 OS=Mus musculus GN=Rcbtb2 PE=2 SV=1	[more]
RCCD1_HUMAN	1.2e-17	32.97	RCC1 domain-containing protein 1 OS=Homo sapiens GN=RCCD1 PE=1 SV=1	[more]

BLAST of CmoCh04G001960 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KLQ7_CUCSA	4.1e-78	89.74	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G184310 PE=4 SV=1	[more]
A0A0D2VSB4_GOSRA	1.4e-73	82.05	Uncharacterized protein OS=Gossypium raimondii GN=B456_011G268700 PE=4 SV=1	[more]
A0A0B0PG70_GOSAR	5.8e-72	80.13	RCC1 domain-containing 1 OS=Gossypium arboreum GN=F383_10353 PE=4 SV=1	[more]
A0A061FLA7_THECC	9.9e-72	80.77	Regulator of chromosome condensation repeat-containing protein isoform 1 OS=Theo...	[more]
A0A0J8FRL4_BETVU	1.7e-71	81.41	Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g025460 PE=4 S...	[more]

BLAST of CmoCh04G001960 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G55580.1	4.8e-70	74.51	Regulator of chromosome condensation (RCC1) family protein	[more]
AT3G53830.1	6.6e-59	62.82	Regulator of chromosome condensation (RCC1) family protein	[more]
AT5G63860.1	3.3e-26	38.89	Regulator of chromosome condensation (RCC1) family protein	[more]
AT5G08710.1	3.0e-19	31.91	Regulator of chromosome condensation (RCC1) family protein	[more]
AT5G12350.1	1.5e-18	32.90	Regulator of chromosome condensation (RCC1) family with FYVE zinc fi...	[more]

BLAST of CmoCh04G001960 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659123524\|ref\|XP_008461710.1\|	5.4e-79	90.38	PREDICTED: ultraviolet-B receptor UVR8 isoform X2 [Cucumis melo]	[more]
gi\|659123522\|ref\|XP_008461709.1\|	5.4e-79	90.38	PREDICTED: ultraviolet-B receptor UVR8 isoform X1 [Cucumis melo]	[more]
gi\|449465846\|ref\|XP_004150638.1\|	5.9e-78	89.74	PREDICTED: ultraviolet-B receptor UVR8 isoform X5 [Cucumis sativus]	[more]
gi\|778701104\|ref\|XP_011654966.1\|	5.9e-78	89.74	PREDICTED: ultraviolet-B receptor UVR8 isoform X4 [Cucumis sativus]	[more]
gi\|778701100\|ref\|XP_011654965.1\|	1.6e-75	84.34	PREDICTED: ultraviolet-B receptor UVR8 isoform X3 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000408	Reg_chr_condens
IPR009091	RCC1/BLIP-II

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G001960.1	CmoCh04G001960.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000408	Regulator of chromosome condensation, RCC1	PRINTS	PR00633	RCCNDNSATION	coord: 111..124 score: 1.3E-6coord: 130..146 score: 1.3E-6coord: 182..198 score: 1.3E-6coord: 219..234 score: 1.
IPR000408	Regulator of chromosome condensation, RCC1	PFAM	PF00415	RCC1	coord: 127..177 score: 2.2E-11coord: 181..229 score: 8.5
IPR000408	Regulator of chromosome condensation, RCC1	PROSITE	PS00626	RCC1_2	coord: 114..124 score: -coord: 219..229 scor
IPR000408	Regulator of chromosome condensation, RCC1	PROFILE	PS50012	RCC1_3	coord: 128..181 score: 14.263coord: 182..232 score: 15
IPR009091	Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II	GENE3D	G3DSA:2.130.10.30		coord: 89..232 score: 1.1
IPR009091	Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II	unknown	SSF50985	RCC1/BLIP-II	coord: 89..231 score: 6.93
None	No IPR available	PANTHER	PTHR22870	REGULATOR OF CHROMOSOME CONDENSATION	coord: 89..234 score: 2.2
None	No IPR available	PANTHER	PTHR22870:SF204	REGULATOR OF CHROMOSOME CONDENSATION REPEAT-CONTAINING PROTEIN	coord: 89..234 score: 2.2

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh04G001960	Bottle gourd (USVL1VR-Ls)	cmolsiB630
CmoCh04G001960	Bottle gourd (USVL1VR-Ls)	cmolsiB649
CmoCh04G001960	Bottle gourd (USVL1VR-Ls)	cmolsiB670
CmoCh04G001960	Cucumber (Gy14) v2	cgybcmoB522
CmoCh04G001960	Cucumber (Gy14) v2	cgybcmoB652
CmoCh04G001960	Cucumber (Gy14) v2	cgybcmoB823
CmoCh04G001960	Melon (DHL92) v3.6.1	cmomedB733
CmoCh04G001960	Melon (DHL92) v3.6.1	cmomedB798
CmoCh04G001960	Silver-seed gourd	carcmoB0123
CmoCh04G001960	Silver-seed gourd	carcmoB0372
CmoCh04G001960	Silver-seed gourd	carcmoB0924
CmoCh04G001960	Silver-seed gourd	carcmoB1247
CmoCh04G001960	Cucumber (Chinese Long) v3	cmocucB0837
CmoCh04G001960	Cucumber (Chinese Long) v3	cmocucB0873
CmoCh04G001960	Cucumber (Chinese Long) v3	cmocucB0906
CmoCh04G001960	Watermelon (97103) v2	cmowmbB722
CmoCh04G001960	Watermelon (97103) v2	cmowmbB755
CmoCh04G001960	Wax gourd	cmowgoB0837
CmoCh04G001960	Wax gourd	cmowgoB0864
CmoCh04G001960	Cucurbita moschata (Rifu)	cmocmoB267
CmoCh04G001960	Cucurbita moschata (Rifu)	cmocmoB448
CmoCh04G001960	Cucurbita moschata (Rifu)	cmocmoB464
CmoCh04G001960	Cucurbita moschata (Rifu)	cmocmoB478
CmoCh04G001960	Cucumber (Gy14) v1	cgycmoB0373
CmoCh04G001960	Cucumber (Gy14) v1	cgycmoB0474
CmoCh04G001960	Cucurbita maxima (Rimu)	cmacmoB728
CmoCh04G001960	Cucurbita maxima (Rimu)	cmacmoB731
CmoCh04G001960	Wild cucumber (PI 183967)	cmocpiB747
CmoCh04G001960	Wild cucumber (PI 183967)	cmocpiB776
CmoCh04G001960	Cucumber (Chinese Long) v2	cmocuB737
CmoCh04G001960	Cucumber (Chinese Long) v2	cmocuB767
CmoCh04G001960	Melon (DHL92) v3.5.1	cmomeB646
CmoCh04G001960	Melon (DHL92) v3.5.1	cmomeB676
CmoCh04G001960	Watermelon (Charleston Gray)	cmowcgB630
CmoCh04G001960	Watermelon (Charleston Gray)	cmowcgB676
CmoCh04G001960	Watermelon (97103) v1	cmowmB673
CmoCh04G001960	Watermelon (97103) v1	cmowmB737
CmoCh04G001960	Cucurbita pepo (Zucchini)	cmocpeB653
CmoCh04G001960	Cucurbita pepo (Zucchini)	cmocpeB673
CmoCh04G001960	Cucurbita pepo (Zucchini)	cmocpeB674